Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47172 * 2 1 4 4 C 1.34231 * 116.99508 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00300 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99512 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.49827 * 299.93746 * 6 4 3 8 8 C 1.53042 * 109.49800 * 179.84335 * 6 4 3 9 9 C 1.53039 * 109.53883 * 178.68357 * 8 6 4 10 10 C 1.53190 * 109.31088 * 61.36325 * 9 8 6 11 11 N 1.46925 * 108.77560 * 305.36293 * 10 9 8 12 12 C 1.34772 * 120.62970 * 233.62959 * 11 10 9 13 13 O 1.21587 * 120.00154 * 174.74764 * 12 11 10 14 14 N 1.34776 * 120.00250 * 354.75373 * 12 11 10 15 15 C 1.37198 * 120.00370 * 184.98660 * 14 12 11 16 16 H 1.08006 * 119.99712 * 359.97438 * 15 14 12 17 17 C 1.38875 * 120.00267 * 179.97438 * 15 14 12 18 18 N 1.31474 * 119.99965 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99921 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47351 * 89.99565 * 19 17 15 21 21 H 1.48503 * 109.47185 * 209.99692 * 19 17 15 22 22 H 1.48506 * 109.47181 * 329.99352 * 19 17 15 23 23 C 1.46920 * 118.73788 * 53.61383 * 11 10 9 24 24 H 1.08997 * 109.47477 * 300.00849 * 1 2 3 25 25 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46582 * 60.00240 * 1 2 3 27 27 H 1.09006 * 109.46933 * 119.99443 * 2 1 3 28 28 H 1.08997 * 109.47477 * 239.99151 * 2 1 3 29 29 H 1.09000 * 109.45522 * 298.70545 * 8 6 4 30 30 H 1.09004 * 109.45849 * 58.66120 * 8 6 4 31 31 H 1.08999 * 109.49549 * 301.40774 * 9 8 6 32 32 H 1.09003 * 109.52428 * 181.33174 * 9 8 6 33 33 H 1.09004 * 109.58056 * 185.57858 * 10 9 8 34 34 H 1.08992 * 109.70427 * 65.22531 * 10 9 8 35 35 H 0.96996 * 119.99955 * 4.98676 * 14 12 11 36 36 H 0.97001 * 120.00022 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.58755 * 186.60508 * 23 11 10 38 38 H 1.08997 * 109.58976 * 66.17884 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5864 3.4690 -0.8909 8 6 5.4491 2.8579 0.0047 9 6 6.0352 4.2713 -0.0290 10 6 5.5868 5.0355 1.2207 11 7 4.1204 4.9921 1.3008 12 6 3.4052 6.1283 1.4184 13 8 2.1904 6.0880 1.3877 14 7 4.0366 7.3094 1.5699 15 6 3.3103 8.4520 1.7920 16 1 2.2326 8.4051 1.8450 17 6 3.9609 9.6689 1.9486 18 7 3.2649 10.7637 2.1620 19 14 5.8248 9.7502 1.8562 20 1 6.2408 9.9910 0.4512 21 1 6.3152 10.8584 2.7145 22 1 6.4004 8.4657 2.3296 23 6 3.4485 3.6865 1.2499 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 5.7834 2.3476 0.9080 30 1 5.7867 2.3038 -0.8712 31 1 5.6814 4.7906 -0.9196 32 1 7.1235 4.2140 -0.0495 33 1 5.9186 6.0717 1.1539 34 1 6.0153 4.5712 2.1088 35 1 5.0044 7.3516 1.5219 36 1 3.7193 11.6138 2.2710 37 1 2.3694 3.8325 1.2024 38 1 3.7025 3.1099 2.1393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = -111.418968 kcal Electronic energy + Delta-G solvation = -21233.486345 eV Core-core repulsion = 17883.380692 eV Total energy + Delta-G solvation = -3350.105653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82700 -39.48646 -37.29397 -36.42378 -34.15324 -32.75175 -31.98840 -31.51254 -30.91115 -25.76762 -25.17728 -23.58881 -23.09217 -21.67955 -20.20874 -19.04979 -18.74696 -17.73851 -16.88797 -16.69984 -16.14357 -15.41655 -14.98682 -14.51976 -14.40282 -14.09651 -13.77604 -13.55574 -13.31870 -12.98929 -12.87389 -12.67149 -12.57899 -12.11582 -12.00857 -11.77450 -11.53110 -11.22194 -11.02188 -10.99461 -10.68616 -10.63492 -10.55297 -10.46310 -9.87110 -9.60515 -8.97935 -8.25518 -8.06828 -6.20972 -3.74110 2.08301 2.53002 3.04558 3.09811 3.17727 3.43048 4.09273 4.16680 4.49105 4.58206 4.72041 4.78671 4.79277 4.90580 5.04692 5.06751 5.14690 5.22248 5.34018 5.44625 5.48630 5.58396 5.66002 5.79188 5.81846 5.84782 5.85556 5.92875 6.12621 6.24048 6.34062 6.91785 7.31220 7.65399 7.83797 8.32646 8.77454 9.00872 9.51230 9.92707 10.92839 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.004590 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.472451 B = 6098.924843 C = 6939.761535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.474 3.526 5 O -0.512 6.512 6 C -0.099 4.099 7 H 0.114 0.886 8 C -0.099 4.099 9 C -0.134 4.134 10 C 0.109 3.891 11 N -0.640 5.640 12 C 0.671 3.329 13 O -0.604 6.604 14 N -0.611 5.611 15 C -0.292 4.292 16 H 0.120 0.880 17 C 0.039 3.961 18 N -0.891 5.891 19 Si 0.876 3.124 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.149 3.851 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.369 0.631 36 H 0.271 0.729 37 H 0.107 0.893 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -18.883 -4.620 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.317 3.683 5 O -0.399 6.399 6 C -0.119 4.119 7 H 0.132 0.868 8 C -0.137 4.137 9 C -0.173 4.173 10 C -0.015 4.015 11 N -0.381 5.381 12 C 0.373 3.627 13 O -0.484 6.484 14 N -0.256 5.256 15 C -0.421 4.421 16 H 0.137 0.863 17 C -0.163 4.163 18 N -0.532 5.532 19 Si 0.702 3.298 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.198 1.198 23 C 0.024 3.976 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.204 0.796 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.701 -18.917 -4.566 19.809 hybrid contribution 1.609 0.053 -0.107 1.613 sum 5.310 -18.864 -4.673 20.146 Atomic orbital electron populations 1.21814 0.92529 1.02805 1.03952 1.23029 0.95556 0.80308 1.02382 1.86585 1.24441 1.32193 1.83605 1.23657 0.80535 0.92378 0.71754 1.90637 1.60528 1.43112 1.45673 1.21598 0.97097 0.89668 1.03541 0.86772 1.21393 0.91498 0.97225 1.03576 1.21960 1.00815 0.95391 0.99125 1.21573 0.81441 1.00904 0.97594 1.47104 1.05248 1.05053 1.80673 1.15571 0.85199 0.79979 0.81952 1.90781 1.11657 1.85193 1.60792 1.41525 1.07570 1.06041 1.70441 1.19297 0.94356 0.82441 1.45981 0.86270 1.24894 0.98022 0.95068 0.98284 1.69628 1.35268 0.98630 1.49653 0.86747 0.85936 0.78225 0.78841 1.19721 1.20200 1.19809 1.21070 0.99993 0.82796 0.93742 0.91160 0.90376 0.91347 0.91267 0.91395 0.90854 0.90937 0.90991 0.90245 0.90452 0.91694 0.79559 0.91807 0.87509 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.35 -4.49 10.15 -39.26 -0.40 -4.89 16 4 C 0.47 6.28 7.26 36.01 0.26 6.54 16 5 O -0.51 -7.52 15.73 -18.74 -0.29 -7.82 16 6 C -0.10 -1.26 2.78 -91.65 -0.25 -1.52 16 7 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 8 C -0.10 -1.11 4.46 -26.69 -0.12 -1.23 16 9 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 10 C 0.11 1.51 6.39 -3.71 -0.02 1.49 16 11 N -0.64 -11.31 2.97 -178.51 -0.53 -11.84 16 12 C 0.67 15.68 8.25 -86.92 -0.72 14.96 16 13 O -0.60 -16.46 15.35 5.29 0.08 -16.38 16 14 N -0.61 -14.84 5.00 -15.34 -0.08 -14.92 16 15 C -0.29 -8.35 10.16 -14.91 -0.15 -8.50 16 16 H 0.12 3.88 7.40 -52.48 -0.39 3.49 16 17 C 0.04 1.08 5.50 -17.47 -0.10 0.98 16 18 N -0.89 -26.33 13.96 55.49 0.77 -25.55 16 19 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 23 C 0.15 2.27 5.65 -3.72 -0.02 2.25 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.13 5.65 -51.93 -0.29 0.84 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.37 7.93 3.25 -40.82 -0.13 7.80 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.11 1.85 7.00 -51.93 -0.36 1.49 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -33.78 313.83 -6.51 -40.29 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.41 Total: 8.22 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -0.67 Total: 13.33 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.17 Total: -52.31 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.61 Total: -29.09 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.78 -6.51 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.127 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds