Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47172 * 2 1 4 4 C 1.34231 * 116.99508 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00300 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99512 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.49827 * 299.93746 * 6 4 3 8 8 C 1.53042 * 109.49800 * 179.84335 * 6 4 3 9 9 C 1.53039 * 109.53883 * 178.68357 * 8 6 4 10 10 C 1.53190 * 109.31088 * 61.36325 * 9 8 6 11 11 N 1.46925 * 108.77560 * 305.36293 * 10 9 8 12 12 C 1.34772 * 120.62970 * 233.62959 * 11 10 9 13 13 O 1.21587 * 120.00154 * 174.74764 * 12 11 10 14 14 N 1.34776 * 120.00250 * 354.75373 * 12 11 10 15 15 C 1.37198 * 120.00370 * 184.98660 * 14 12 11 16 16 H 1.08006 * 119.99712 * 359.97438 * 15 14 12 17 17 C 1.38875 * 120.00267 * 179.97438 * 15 14 12 18 18 N 1.31474 * 119.99965 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99921 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47351 * 89.99565 * 19 17 15 21 21 H 1.48503 * 109.47185 * 209.99692 * 19 17 15 22 22 H 1.48506 * 109.47181 * 329.99352 * 19 17 15 23 23 C 1.46920 * 118.73788 * 53.61383 * 11 10 9 24 24 H 1.08997 * 109.47477 * 300.00849 * 1 2 3 25 25 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46582 * 60.00240 * 1 2 3 27 27 H 1.09006 * 109.46933 * 119.99443 * 2 1 3 28 28 H 1.08997 * 109.47477 * 239.99151 * 2 1 3 29 29 H 1.09000 * 109.45522 * 298.70545 * 8 6 4 30 30 H 1.09004 * 109.45849 * 58.66120 * 8 6 4 31 31 H 1.08999 * 109.49549 * 301.40774 * 9 8 6 32 32 H 1.09003 * 109.52428 * 181.33174 * 9 8 6 33 33 H 1.09004 * 109.58056 * 185.57858 * 10 9 8 34 34 H 1.08992 * 109.70427 * 65.22531 * 10 9 8 35 35 H 0.96996 * 119.99955 * 4.98676 * 14 12 11 36 36 H 0.97001 * 120.00022 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.58755 * 186.60508 * 23 11 10 38 38 H 1.08997 * 109.58976 * 66.17884 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5864 3.4690 -0.8909 8 6 5.4491 2.8579 0.0047 9 6 6.0352 4.2713 -0.0290 10 6 5.5868 5.0355 1.2207 11 7 4.1204 4.9921 1.3008 12 6 3.4052 6.1283 1.4184 13 8 2.1904 6.0880 1.3877 14 7 4.0366 7.3094 1.5699 15 6 3.3103 8.4520 1.7920 16 1 2.2326 8.4051 1.8450 17 6 3.9609 9.6689 1.9486 18 7 3.2649 10.7637 2.1620 19 14 5.8248 9.7502 1.8562 20 1 6.2408 9.9910 0.4512 21 1 6.3152 10.8584 2.7145 22 1 6.4004 8.4657 2.3296 23 6 3.4485 3.6865 1.2499 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 5.7834 2.3476 0.9080 30 1 5.7867 2.3038 -0.8712 31 1 5.6814 4.7906 -0.9196 32 1 7.1235 4.2140 -0.0495 33 1 5.9186 6.0717 1.1539 34 1 6.0153 4.5712 2.1088 35 1 5.0044 7.3516 1.5219 36 1 3.7193 11.6138 2.2710 37 1 2.3694 3.8325 1.2024 38 1 3.7025 3.1099 2.1393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = -134.266581 kcal Electronic energy + Delta-G solvation = -21234.477091 eV Core-core repulsion = 17883.380692 eV Total energy + Delta-G solvation = -3351.096400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92499 -41.02209 -38.59203 -37.57597 -36.15598 -34.25685 -33.29541 -32.90570 -31.99412 -27.50179 -26.24574 -25.15773 -23.96916 -22.72588 -21.40766 -20.95748 -20.24809 -18.88124 -18.38537 -17.73694 -17.35818 -17.10010 -16.23319 -16.14985 -15.71334 -15.32329 -14.96076 -14.76757 -14.60544 -14.41939 -14.21048 -14.03378 -13.61812 -13.56732 -12.98951 -12.94204 -12.62224 -12.48861 -12.41426 -12.12897 -11.98735 -11.87467 -11.66240 -11.54309 -11.52845 -11.48595 -10.91568 -10.27874 -9.58802 -8.34005 -5.95001 1.01793 1.29362 1.37622 1.44218 1.58225 1.98708 2.25284 2.26712 3.21209 3.35181 3.51641 3.69670 3.73662 3.99573 4.00475 4.05304 4.07430 4.16488 4.33701 4.49870 4.54912 4.70877 4.76079 4.83241 4.88548 4.90942 5.01689 5.08381 5.13759 5.34775 5.40308 5.43754 5.67049 5.82804 6.25328 6.64133 6.79512 6.91276 7.50638 8.03537 8.83970 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.004590 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.472451 B = 6098.924843 C = 6939.761535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.479 3.521 5 O -0.524 6.524 6 C -0.092 4.092 7 H 0.111 0.889 8 C -0.094 4.094 9 C -0.125 4.125 10 C 0.097 3.903 11 N -0.632 5.632 12 C 0.670 3.330 13 O -0.654 6.654 14 N -0.609 5.609 15 C -0.313 4.313 16 H 0.057 0.943 17 C -0.017 4.017 18 N -0.941 5.941 19 Si 0.958 3.042 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.234 1.234 23 C 0.148 3.852 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.386 0.614 36 H 0.277 0.723 37 H 0.077 0.923 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.896 -20.675 -5.071 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.322 3.678 5 O -0.413 6.413 6 C -0.112 4.112 7 H 0.129 0.871 8 C -0.131 4.131 9 C -0.163 4.163 10 C -0.025 4.025 11 N -0.371 5.371 12 C 0.372 3.628 13 O -0.538 6.538 14 N -0.257 5.257 15 C -0.442 4.442 16 H 0.075 0.925 17 C -0.215 4.215 18 N -0.583 5.583 19 Si 0.779 3.221 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.157 1.157 23 C 0.023 3.977 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.224 -20.777 -5.027 22.564 hybrid contribution 0.368 0.528 0.040 0.645 sum 7.592 -20.248 -4.988 22.192 Atomic orbital electron populations 1.21847 0.91054 1.04377 1.03434 1.23322 0.96784 0.78984 1.02936 1.86590 1.24282 1.34113 1.83296 1.23613 0.80616 0.92211 0.71335 1.90627 1.60808 1.43466 1.46435 1.21537 0.98696 0.89133 1.01863 0.87081 1.21404 0.89582 0.97637 1.04510 1.21940 1.02858 0.94415 0.97129 1.21983 0.78420 1.01662 1.00419 1.47070 1.07079 1.03851 1.79077 1.15863 0.84853 0.81103 0.80989 1.90745 1.14301 1.86271 1.62526 1.41183 1.08079 1.05156 1.71273 1.18866 0.92321 0.84928 1.48096 0.92478 1.25935 1.05148 0.93638 0.96731 1.69816 1.38517 0.99634 1.50333 0.85468 0.76928 0.80015 0.79738 1.18059 1.19883 1.15736 1.21144 0.98404 0.82082 0.96020 0.91878 0.87739 0.91638 0.90847 0.90681 0.90163 0.89717 0.91582 0.86674 0.90799 0.89057 0.77535 0.91323 0.90415 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.29 71.98 0.74 -1.43 16 2 C 0.05 0.99 6.19 71.98 0.45 1.43 16 3 O -0.37 -9.19 10.15 -51.43 -0.52 -9.71 16 4 C 0.48 12.05 7.26 71.24 0.52 12.57 16 5 O -0.52 -14.37 15.73 21.98 0.35 -14.03 16 6 C -0.09 -2.21 2.78 -11.46 -0.03 -2.25 16 7 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 8 C -0.09 -1.77 4.46 30.62 0.14 -1.64 16 9 C -0.13 -2.25 6.08 30.67 0.19 -2.06 16 10 C 0.10 2.36 6.39 86.36 0.55 2.91 16 11 N -0.63 -21.61 2.97 -836.95 -2.49 -24.10 16 12 C 0.67 31.90 8.25 179.06 1.48 33.38 16 13 O -0.65 -37.65 15.35 -3.99 -0.06 -37.72 16 14 N -0.61 -29.73 5.00 -320.70 -1.60 -31.34 16 15 C -0.31 -18.63 10.16 84.01 0.85 -17.78 16 16 H 0.06 4.03 7.40 -2.91 -0.02 4.01 16 17 C -0.02 -0.95 5.50 84.90 0.47 -0.49 16 18 N -0.94 -57.39 13.96 21.65 0.30 -57.08 16 19 Si 0.96 39.07 27.74 68.60 1.90 40.97 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 23 C 0.15 4.40 5.65 86.36 0.49 4.89 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.07 1.30 8.13 -2.38 -0.02 1.28 16 28 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.86 5.65 -2.38 -0.01 1.85 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.39 15.78 3.25 -92.71 -0.30 15.48 16 36 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.08 2.79 7.00 -2.39 -0.02 2.78 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -78.40 313.83 4.41 -73.99 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.71 Total: 29.47 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 5.83 Total: 29.54 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -3.79 Total: -112.52 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -0.24 Total: -61.45 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Total: -78.40 4.41 -73.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.277 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds