Wall clock time and date at job start Mon Mar 30 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46928 * 2 1 4 4 C 1.34232 * 116.99656 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00162 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99766 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46846 * 285.60697 * 6 4 3 8 8 N 1.46895 * 109.46777 * 165.60736 * 6 4 3 9 9 C 1.50702 * 109.47150 * 45.60490 * 6 4 3 10 10 O 1.21287 * 119.99459 * 84.40042 * 9 6 4 11 11 N 1.34774 * 120.00257 * 264.40650 * 9 6 4 12 12 C 1.46497 * 120.00192 * 174.06592 * 11 9 6 13 13 C 1.50694 * 109.47276 * 89.99265 * 12 11 9 14 14 H 1.08000 * 120.00322 * 359.73079 * 13 12 11 15 15 C 1.37876 * 120.00193 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99850 * 359.72811 * 15 13 12 17 17 Si 1.86802 * 120.00451 * 179.72846 * 15 13 12 18 18 H 1.48499 * 109.46961 * 89.99991 * 17 15 13 19 19 H 1.48500 * 109.47291 * 210.00293 * 17 15 13 20 20 H 1.48503 * 109.46889 * 330.00460 * 17 15 13 21 21 C 1.46506 * 119.99904 * 354.06060 * 11 9 6 22 22 C 1.52997 * 117.49581 * 30.99751 * 21 11 9 23 23 C 1.52998 * 117.49862 * 322.33929 * 21 11 9 24 24 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46685 * 299.99120 * 1 2 3 26 26 H 1.08999 * 109.47881 * 59.99049 * 1 2 3 27 27 H 1.09003 * 109.46685 * 240.00880 * 2 1 3 28 28 H 1.08993 * 109.47477 * 120.00837 * 2 1 3 29 29 H 1.00897 * 111.00357 * 299.99717 * 8 6 4 30 30 H 1.00901 * 111.00239 * 63.95399 * 8 6 4 31 31 H 1.09002 * 109.46831 * 329.99562 * 12 11 9 32 32 H 1.08999 * 109.47236 * 209.99959 * 12 11 9 33 33 H 0.96996 * 119.99849 * 179.97438 * 16 15 13 34 34 H 1.08997 * 115.54700 * 176.66770 * 21 11 9 35 35 H 1.08996 * 117.50414 * 0.02562 * 22 21 11 36 36 H 1.09006 * 117.49761 * 145.01812 * 22 21 11 37 37 H 1.08998 * 117.49917 * 214.97903 * 23 21 11 38 38 H 1.09007 * 117.49899 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.8044 3.3791 -0.9885 8 7 5.3474 2.8770 0.3459 9 6 3.1938 3.7813 1.0164 10 8 3.5323 3.7549 2.1807 11 7 2.1676 4.5651 0.6305 12 6 1.3781 5.2846 1.6330 13 6 1.9912 6.6394 1.8775 14 1 2.8825 6.9332 1.3431 15 6 1.4171 7.5019 2.7872 16 7 0.3314 7.1443 3.4377 17 14 2.1814 9.1782 3.0959 18 1 1.5938 10.1700 2.1599 19 1 1.9096 9.5961 4.4947 20 1 3.6484 9.1010 2.8784 21 6 1.8416 4.6976 -0.7917 22 6 2.1231 3.4959 -1.6959 23 6 3.0067 4.7429 -1.7823 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8898 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 5.4817 2.4710 1.2598 30 1 5.8676 2.3706 -0.3548 31 1 1.3683 4.7170 2.5636 32 1 0.3571 5.4076 1.2718 33 1 -0.0722 7.7510 4.0779 34 1 0.9644 5.3035 -1.0184 35 1 2.5504 2.6066 -1.2327 36 1 1.4312 3.3115 -2.5178 37 1 2.8958 5.3783 -2.6610 38 1 4.0158 4.6745 -1.3759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224038650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:23 Heat of formation + Delta-G solvation = -29.942342 kcal Electronic energy + Delta-G solvation = -22152.552598 eV Core-core repulsion = 18805.980037 eV Total energy + Delta-G solvation = -3346.572561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53891 -39.45696 -37.09081 -36.79349 -34.47782 -33.13589 -31.90166 -31.82067 -28.04324 -26.71213 -23.86947 -22.75021 -22.49429 -22.18413 -20.99330 -19.59209 -18.17247 -16.90039 -16.63400 -16.41557 -16.17287 -15.96263 -14.93371 -14.52834 -14.40096 -14.13333 -13.79197 -13.50403 -13.30746 -12.92028 -12.87100 -12.17866 -12.10811 -11.71615 -11.51256 -11.41630 -11.19359 -11.02513 -10.79801 -10.72567 -10.58111 -10.44870 -10.25493 -10.02695 -9.55702 -9.38818 -8.85428 -8.43374 -7.64397 -6.04420 -4.08648 1.93442 2.48761 3.09248 3.32107 3.38862 3.44176 3.62023 4.09380 4.44636 4.51900 4.55361 4.69454 4.82982 4.86635 4.98357 5.02018 5.11602 5.15108 5.28701 5.30640 5.53605 5.69757 5.74297 5.90887 5.95929 6.09376 6.09658 6.30926 6.77679 6.98695 7.30710 7.34966 7.45960 7.55554 7.91723 8.19972 8.23644 8.78881 8.98086 9.56148 11.03737 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.005931 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.531907 B = 4719.484848 C = 5004.135933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.340 6.340 4 C 0.443 3.557 5 O -0.511 6.511 6 C 0.014 3.986 7 H 0.191 0.809 8 N -0.797 5.797 9 C 0.527 3.473 10 O -0.518 6.518 11 N -0.556 5.556 12 C 0.250 3.750 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.107 3.893 22 C -0.237 4.237 23 C -0.224 4.224 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.357 0.643 30 H 0.352 0.648 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -11.218 -12.320 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.256 6.256 4 C 0.284 3.716 5 O -0.399 6.399 6 C -0.102 4.102 7 H 0.206 0.794 8 N -0.329 5.329 9 C 0.310 3.690 10 O -0.393 6.393 11 N -0.286 5.286 12 C 0.132 3.868 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.000 4.000 22 C -0.274 4.274 23 C -0.261 4.261 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.166 0.834 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.341 -10.668 -11.526 15.762 hybrid contribution 0.279 -0.322 0.182 0.464 sum 1.620 -10.991 -11.343 15.877 Atomic orbital electron populations 1.21798 0.92320 1.02732 1.04083 1.23085 0.95839 0.80507 1.02313 1.86777 1.23997 1.32079 1.82728 1.24824 0.81320 0.93598 0.71879 1.90636 1.60572 1.42664 1.46060 1.23728 0.90255 0.89198 1.06989 0.79365 1.58905 1.03768 1.61080 1.09150 1.19343 0.80647 0.80794 0.88175 1.90703 1.63819 1.66106 1.18650 1.47714 1.30688 1.44341 1.05813 1.19386 0.89879 0.91241 0.86344 1.21433 1.11872 0.99476 1.23553 0.92130 1.24927 0.94969 0.98768 0.95422 1.69931 1.20164 1.36702 1.26731 0.86474 0.79777 0.83637 0.77430 1.20631 1.21152 1.19789 1.21643 0.99037 0.99586 0.79708 1.24610 1.04619 0.94063 1.04137 1.23879 0.97353 1.01293 1.03604 0.90432 0.91045 0.91279 0.91324 0.91341 0.82756 0.83379 0.93748 0.94392 0.92715 0.84318 0.86768 0.87844 0.87373 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.34 -5.17 7.91 -39.26 -0.31 -5.48 16 4 C 0.44 7.16 6.13 36.01 0.22 7.38 16 5 O -0.51 -8.58 16.06 -18.74 -0.30 -8.88 16 6 C 0.01 0.24 2.17 -70.02 -0.15 0.08 16 7 H 0.19 2.71 1.99 -56.06 -0.11 2.59 16 8 N -0.80 -12.25 8.78 -6.65 -0.06 -12.30 16 9 C 0.53 11.28 6.26 -10.99 -0.07 11.22 16 10 O -0.52 -13.29 16.09 5.55 0.09 -13.20 16 11 N -0.56 -11.80 2.85 -167.47 -0.48 -12.27 16 12 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 13 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.11 1.73 6.63 -67.93 -0.45 1.28 16 22 C -0.24 -3.01 8.77 -26.70 -0.23 -3.24 16 23 C -0.22 -2.92 9.31 -26.70 -0.25 -3.17 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.36 5.86 8.55 -39.29 -0.34 5.52 16 30 H 0.35 4.35 8.81 -39.29 -0.35 4.00 16 31 H 0.04 1.29 7.51 -51.93 -0.39 0.90 16 32 H 0.04 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.14 2.11 8.11 -51.93 -0.42 1.69 16 35 H 0.12 1.57 1.62 -52.01 -0.08 1.48 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.11 1.58 5.92 -51.92 -0.31 1.27 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -33.42 315.23 -6.28 -39.70 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.92 Total: 10.11 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.77 Total: 6.34 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.20 Total: -50.18 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.52 Total: -27.56 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.42 -6.28 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224038650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.759 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds