Wall clock time and date at job start Mon Mar 30 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46928 * 2 1 4 4 C 1.34232 * 116.99656 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00162 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99766 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46846 * 285.60697 * 6 4 3 8 8 N 1.46895 * 109.46777 * 165.60736 * 6 4 3 9 9 C 1.50702 * 109.47150 * 45.60490 * 6 4 3 10 10 O 1.21287 * 119.99459 * 84.40042 * 9 6 4 11 11 N 1.34774 * 120.00257 * 264.40650 * 9 6 4 12 12 C 1.46497 * 120.00192 * 174.06592 * 11 9 6 13 13 C 1.50694 * 109.47276 * 89.99265 * 12 11 9 14 14 H 1.08000 * 120.00322 * 359.73079 * 13 12 11 15 15 C 1.37876 * 120.00193 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99850 * 359.72811 * 15 13 12 17 17 Si 1.86802 * 120.00451 * 179.72846 * 15 13 12 18 18 H 1.48499 * 109.46961 * 89.99991 * 17 15 13 19 19 H 1.48500 * 109.47291 * 210.00293 * 17 15 13 20 20 H 1.48503 * 109.46889 * 330.00460 * 17 15 13 21 21 C 1.46506 * 119.99904 * 354.06060 * 11 9 6 22 22 C 1.52997 * 117.49581 * 30.99751 * 21 11 9 23 23 C 1.52998 * 117.49862 * 322.33929 * 21 11 9 24 24 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46685 * 299.99120 * 1 2 3 26 26 H 1.08999 * 109.47881 * 59.99049 * 1 2 3 27 27 H 1.09003 * 109.46685 * 240.00880 * 2 1 3 28 28 H 1.08993 * 109.47477 * 120.00837 * 2 1 3 29 29 H 1.00897 * 111.00357 * 299.99717 * 8 6 4 30 30 H 1.00901 * 111.00239 * 63.95399 * 8 6 4 31 31 H 1.09002 * 109.46831 * 329.99562 * 12 11 9 32 32 H 1.08999 * 109.47236 * 209.99959 * 12 11 9 33 33 H 0.96996 * 119.99849 * 179.97438 * 16 15 13 34 34 H 1.08997 * 115.54700 * 176.66770 * 21 11 9 35 35 H 1.08996 * 117.50414 * 0.02562 * 22 21 11 36 36 H 1.09006 * 117.49761 * 145.01812 * 22 21 11 37 37 H 1.08998 * 117.49917 * 214.97903 * 23 21 11 38 38 H 1.09007 * 117.49899 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.8044 3.3791 -0.9885 8 7 5.3474 2.8770 0.3459 9 6 3.1938 3.7813 1.0164 10 8 3.5323 3.7549 2.1807 11 7 2.1676 4.5651 0.6305 12 6 1.3781 5.2846 1.6330 13 6 1.9912 6.6394 1.8775 14 1 2.8825 6.9332 1.3431 15 6 1.4171 7.5019 2.7872 16 7 0.3314 7.1443 3.4377 17 14 2.1814 9.1782 3.0959 18 1 1.5938 10.1700 2.1599 19 1 1.9096 9.5961 4.4947 20 1 3.6484 9.1010 2.8784 21 6 1.8416 4.6976 -0.7917 22 6 2.1231 3.4959 -1.6959 23 6 3.0067 4.7429 -1.7823 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8898 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 5.4817 2.4710 1.2598 30 1 5.8676 2.3706 -0.3548 31 1 1.3683 4.7170 2.5636 32 1 0.3571 5.4076 1.2718 33 1 -0.0722 7.7510 4.0779 34 1 0.9644 5.3035 -1.0184 35 1 2.5504 2.6066 -1.2327 36 1 1.4312 3.3115 -2.5178 37 1 2.8958 5.3783 -2.6610 38 1 4.0158 4.6745 -1.3759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224038650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:23 Heat of formation + Delta-G solvation = -54.565651 kcal Electronic energy + Delta-G solvation = -22153.620345 eV Core-core repulsion = 18805.980037 eV Total energy + Delta-G solvation = -3347.640308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.85791 -40.85792 -38.51537 -38.07822 -36.12558 -34.83670 -33.72934 -32.73385 -29.70409 -28.39093 -25.35821 -24.37873 -23.65595 -23.28013 -22.29972 -21.06647 -19.44137 -18.68188 -18.02893 -17.94161 -17.58904 -17.34890 -16.45401 -16.31757 -15.82299 -15.30899 -15.22513 -14.93018 -14.59460 -14.45317 -14.15265 -13.68407 -13.43917 -13.15712 -13.02877 -12.67854 -12.60217 -12.54537 -12.35366 -12.27074 -12.12383 -11.95534 -11.54444 -11.47655 -11.29728 -11.01893 -10.61828 -10.21288 -9.31352 -8.20948 -6.34944 0.63712 1.22342 1.38767 1.41861 1.52137 1.64909 2.05676 2.41421 2.93842 3.07899 3.20842 3.24052 3.49579 3.74906 3.80151 3.93965 3.97482 4.02051 4.10767 4.27330 4.67373 4.73410 4.77939 4.88761 4.97217 4.99869 5.03673 5.12601 5.17392 5.30190 5.56289 5.57840 5.79956 6.05046 6.18277 6.32898 6.55160 6.72871 7.15537 7.36589 8.86001 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.005931 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.531907 B = 4719.484848 C = 5004.135933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.351 6.351 4 C 0.446 3.554 5 O -0.518 6.518 6 C 0.028 3.972 7 H 0.215 0.785 8 N -0.799 5.799 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.559 5.559 12 C 0.265 3.735 13 C -0.540 4.540 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.059 3.941 22 C -0.209 4.209 23 C -0.205 4.205 24 H 0.106 0.894 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.350 0.650 30 H 0.370 0.630 31 H -0.001 1.001 32 H 0.034 0.966 33 H 0.267 0.733 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -11.199 -14.955 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.266 6.266 4 C 0.287 3.713 5 O -0.407 6.407 6 C -0.087 4.087 7 H 0.231 0.769 8 N -0.333 5.333 9 C 0.302 3.698 10 O -0.455 6.455 11 N -0.287 5.287 12 C 0.145 3.855 13 C -0.578 4.578 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.045 4.045 22 C -0.246 4.246 23 C -0.242 4.242 24 H 0.124 0.876 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.187 0.813 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.576 -10.666 -14.241 17.862 hybrid contribution 0.145 -0.394 0.986 1.072 sum 1.722 -11.060 -13.255 17.349 Atomic orbital electron populations 1.21831 0.90530 1.04469 1.03558 1.23427 0.97261 0.79006 1.02895 1.86773 1.23302 1.34178 1.82362 1.24633 0.81747 0.93173 0.71794 1.90629 1.60847 1.42711 1.46547 1.23646 0.90140 0.88793 1.06159 0.76946 1.58874 1.03411 1.61589 1.09427 1.20149 0.80424 0.80759 0.88466 1.90661 1.65610 1.68007 1.21264 1.47614 1.30046 1.43570 1.07479 1.18838 0.90373 0.90277 0.86040 1.21656 1.11705 1.00566 1.23888 0.92891 1.25811 0.95377 1.02722 0.95009 1.70042 1.21328 1.38161 1.27196 0.85426 0.78570 0.79171 0.77712 1.18586 1.20726 1.20033 1.22013 1.01518 1.03543 0.77446 1.24629 1.04236 0.92683 1.03014 1.23963 0.95700 1.01686 1.02850 0.87563 0.92929 0.90371 0.89350 0.92159 0.83531 0.81270 0.98340 0.94770 0.92383 0.83769 0.87578 0.84282 0.83956 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.06 6.19 71.98 0.45 1.50 16 3 O -0.35 -10.32 7.91 -51.44 -0.41 -10.72 16 4 C 0.45 13.96 6.13 71.24 0.44 14.40 16 5 O -0.52 -16.76 16.06 21.99 0.35 -16.40 16 6 C 0.03 0.91 2.17 43.43 0.09 1.00 16 7 H 0.22 5.65 1.99 -6.26 -0.01 5.64 16 8 N -0.80 -24.07 8.78 -174.95 -1.54 -25.61 16 9 C 0.52 22.67 6.26 87.66 0.55 23.22 16 10 O -0.58 -31.11 16.09 -3.05 -0.05 -31.16 16 11 N -0.56 -24.24 2.85 -802.16 -2.29 -26.53 16 12 C 0.27 14.34 5.16 85.63 0.44 14.78 16 13 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.57 5.46 84.65 0.46 1.03 16 16 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 C 0.06 1.84 6.63 44.99 0.30 2.14 16 22 C -0.21 -4.62 8.77 30.62 0.27 -4.35 16 23 C -0.20 -4.69 9.31 30.62 0.28 -4.40 16 24 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.35 11.62 8.55 -89.70 -0.77 10.85 16 30 H 0.37 8.56 8.81 -89.69 -0.79 7.77 16 31 H 0.00 -0.09 7.51 -2.39 -0.02 -0.11 16 32 H 0.03 1.84 8.05 -2.39 -0.02 1.82 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.29 16 34 H 0.14 4.24 8.11 -2.39 -0.02 4.22 16 35 H 0.11 2.63 1.62 -2.46 0.00 2.63 16 36 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.11 2.65 5.92 -2.38 -0.01 2.64 16 Total: -1.00 -75.58 315.23 2.19 -73.39 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.45 Total: 28.87 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 4.26 Total: 16.50 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.54 Total: -107.62 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.10 Total: -58.29 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.58 2.19 -73.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224038650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.823 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds