Wall clock time and date at job start Mon Mar 30 2020 04:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47148 * 2 1 4 4 O 1.42904 * 109.47437 * 120.00042 * 2 1 3 5 5 C 1.53000 * 109.47177 * 240.00090 * 2 1 3 6 6 C 1.53000 * 109.47358 * 177.01210 * 5 2 1 7 7 H 1.09003 * 109.99513 * 56.73325 * 6 5 2 8 8 C 1.54324 * 109.88284 * 295.64226 * 6 5 2 9 9 C 1.55153 * 103.10411 * 218.30115 * 8 6 5 10 10 C 1.55388 * 101.36481 * 35.49138 * 9 8 6 11 11 N 1.47022 * 109.88478 * 177.83389 * 6 5 2 12 12 C 1.34774 * 125.64679 * 298.32551 * 11 6 5 13 13 O 1.21443 * 120.00156 * 4.99546 * 12 11 6 14 14 C 1.48831 * 120.00105 * 185.00234 * 12 11 6 15 15 O 1.21504 * 119.99804 * 359.97438 * 14 12 11 16 16 N 1.34774 * 120.00105 * 179.97438 * 14 12 11 17 17 C 1.36119 * 119.99897 * 180.02562 * 16 14 12 18 18 H 1.07996 * 119.99979 * 359.97438 * 17 16 14 19 19 C 1.39583 * 120.00116 * 179.97438 * 17 16 14 20 20 N 1.31012 * 120.00306 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99947 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47024 * 90.00184 * 21 19 17 23 23 H 1.48493 * 109.47203 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.46997 * 330.00260 * 21 19 17 25 25 H 1.08997 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46934 * 299.99846 * 1 2 3 27 27 H 1.08999 * 109.47087 * 60.00080 * 1 2 3 28 28 H 0.96710 * 113.99482 * 60.00005 * 4 2 1 29 29 H 1.09004 * 109.46855 * 57.01174 * 5 2 1 30 30 H 1.08996 * 109.47030 * 297.01297 * 5 2 1 31 31 H 1.09003 * 110.72166 * 336.75139 * 8 6 5 32 32 H 1.08999 * 110.72157 * 99.84743 * 8 6 5 33 33 H 1.08996 * 111.00779 * 153.66902 * 9 8 6 34 34 H 1.08999 * 111.00456 * 277.51693 * 9 8 6 35 35 H 1.09002 * 110.34148 * 204.16598 * 10 9 8 36 36 H 1.09000 * 110.34744 * 81.87457 * 10 9 8 37 37 H 0.97000 * 120.00285 * 359.97438 * 16 14 12 38 38 H 0.97001 * 120.00071 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5681 -0.6565 -1.2875 7 1 3.9823 -1.0846 -0.3746 8 6 4.0278 0.8093 -1.4351 9 6 5.2448 0.7016 -2.3915 10 6 4.7944 -0.4507 -3.3317 11 7 4.0707 -1.3915 -2.4574 12 6 3.8989 -2.7076 -2.6914 13 8 3.2071 -3.3716 -1.9461 14 6 4.5570 -3.3473 -3.8630 15 8 5.2488 -2.6828 -4.6088 16 7 4.3855 -4.6635 -4.0968 17 6 4.9879 -5.2486 -5.1681 18 1 5.6028 -4.6580 -5.8310 19 6 4.8108 -6.6118 -5.4099 20 7 5.3901 -7.1749 -6.4412 21 14 3.7477 -7.6335 -4.2628 22 1 2.3433 -7.6189 -4.7453 23 1 4.2480 -9.0314 -4.2380 24 1 3.8066 -7.0623 -2.8933 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -1.5953 1.2328 29 1 1.6335 -0.2392 -2.1384 30 1 1.7211 -1.7631 -1.2229 31 1 3.2403 1.4175 -1.8802 32 1 4.3301 1.2177 -0.4708 33 1 5.3893 1.6289 -2.9459 34 1 6.1481 0.4301 -1.8453 35 1 5.6621 -0.9374 -3.7770 36 1 4.1322 -0.0689 -4.1087 37 1 3.8335 -5.1940 -3.5012 38 1 5.2673 -8.1224 -6.6090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306091069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:14 Heat of formation + Delta-G solvation = -121.854856 kcal Electronic energy + Delta-G solvation = -21397.778264 eV Core-core repulsion = 18047.220077 eV Total energy + Delta-G solvation = -3350.558187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20636 -38.46801 -37.30547 -36.72538 -34.31424 -32.33769 -31.95497 -31.20246 -29.70206 -26.16302 -25.61705 -23.76726 -21.99172 -21.49526 -20.32326 -19.25597 -18.29236 -16.84644 -16.46125 -16.28475 -15.85362 -15.39077 -14.98603 -14.62002 -14.15710 -13.87344 -13.64035 -13.23145 -13.01012 -12.94147 -12.86555 -12.52228 -12.44347 -12.15177 -12.06435 -11.63837 -11.29936 -11.15067 -10.97786 -10.76477 -10.70935 -10.66029 -10.30154 -10.16206 -10.03555 -9.77716 -8.47722 -8.40855 -8.17263 -6.59685 -4.01327 2.29302 3.02573 3.05639 3.08813 3.13657 3.94576 4.11708 4.25074 4.42209 4.66475 4.72868 4.80257 4.89710 5.00312 5.07821 5.12073 5.35638 5.40783 5.43485 5.57803 5.61110 5.69441 5.74509 5.82179 5.89429 5.93808 6.18896 6.22554 6.29425 6.32140 6.68172 7.26092 7.54188 7.72924 7.88231 8.19721 8.49880 8.73835 9.18528 9.61069 10.50424 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.005138 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.151647 B = 5448.666888 C = 6385.097103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.098 0.902 4 O -0.565 6.565 5 C -0.166 4.166 6 C 0.141 3.859 7 H 0.081 0.919 8 C -0.128 4.128 9 C -0.137 4.137 10 C 0.097 3.903 11 N -0.596 5.596 12 C 0.528 3.472 13 O -0.551 6.551 14 C 0.407 3.593 15 O -0.573 6.573 16 N -0.528 5.528 17 C -0.308 4.308 18 H 0.128 0.872 19 C 0.053 3.947 20 N -0.850 5.850 21 Si 0.875 3.125 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.260 1.260 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.377 0.623 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.383 0.617 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 13.579 11.033 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.046 3.954 3 H 0.115 0.885 4 O -0.371 6.371 5 C -0.204 4.204 6 C 0.038 3.962 7 H 0.099 0.901 8 C -0.166 4.166 9 C -0.175 4.175 10 C -0.025 4.025 11 N -0.330 5.330 12 C 0.315 3.685 13 O -0.429 6.429 14 C 0.192 3.808 15 O -0.459 6.459 16 N -0.164 5.164 17 C -0.438 4.438 18 H 0.145 0.855 19 C -0.155 4.155 20 N -0.487 5.487 21 Si 0.699 3.301 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.185 1.185 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.225 0.775 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.218 0.782 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.353 13.948 10.891 18.802 hybrid contribution -1.131 -1.447 0.519 1.909 sum -7.485 12.501 11.409 18.506 Atomic orbital electron populations 1.22496 0.96592 1.02700 1.02458 1.21870 0.92625 0.96509 0.84364 0.88461 1.86529 1.77365 1.29368 1.43808 1.22724 0.95951 1.03143 0.98597 1.21524 0.93495 0.91737 0.89473 0.90120 1.22725 0.98357 0.95025 1.00532 1.22941 0.97910 0.98895 0.97759 1.22743 0.98454 0.89159 0.92162 1.48230 1.54322 1.07186 1.23285 1.20347 0.80961 0.80711 0.86460 1.90642 1.39947 1.62510 1.49839 1.18782 0.89689 0.83672 0.88632 1.90540 1.43763 1.61881 1.49739 1.41816 1.42088 1.07599 1.24925 1.19548 1.27709 0.93352 1.03195 0.85494 1.25217 0.97069 0.96566 0.96650 1.69438 1.40116 1.12964 1.26187 0.86692 0.81234 0.80766 0.81359 1.18932 1.19516 1.18452 0.92204 0.91942 0.91657 0.77519 0.90991 0.89701 0.90757 0.90198 0.90017 0.90720 0.86935 0.91773 0.78203 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.53 37.16 0.35 -1.25 16 2 C 0.11 1.07 3.47 -26.73 -0.09 0.98 16 3 H 0.10 0.90 7.25 -51.93 -0.38 0.52 16 4 O -0.56 -6.40 12.75 -35.23 -0.45 -6.85 16 5 C -0.17 -2.07 4.34 -26.73 -0.12 -2.18 16 6 C 0.14 1.94 2.87 -66.95 -0.19 1.75 16 7 H 0.08 1.21 7.71 -51.93 -0.40 0.81 16 8 C -0.13 -1.34 5.42 -24.90 -0.13 -1.48 16 9 C -0.14 -1.53 7.12 -24.32 -0.17 -1.70 16 10 C 0.10 1.50 6.25 -2.27 -0.01 1.48 16 11 N -0.60 -10.31 3.07 -163.45 -0.50 -10.81 16 12 C 0.53 11.19 7.71 -11.88 -0.09 11.09 16 13 O -0.55 -12.10 15.29 5.42 0.08 -12.02 16 14 C 0.41 9.92 7.78 -11.88 -0.09 9.83 16 15 O -0.57 -14.80 13.26 5.36 0.07 -14.73 16 16 N -0.53 -13.36 5.06 -11.59 -0.06 -13.42 16 17 C -0.31 -8.59 10.16 -15.15 -0.15 -8.75 16 18 H 0.13 3.92 7.36 -52.49 -0.39 3.54 16 19 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 20 N -0.85 -23.61 13.94 55.53 0.77 -22.84 16 21 Si 0.87 19.38 27.74 -169.99 -4.72 14.66 16 22 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.60 6.53 56.52 0.37 -5.23 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.38 3.50 9.05 45.56 0.41 3.92 16 29 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.08 1.27 6.63 -51.93 -0.34 0.92 16 31 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.11 2.04 5.86 -51.93 -0.30 1.73 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.38 9.16 5.22 -40.82 -0.21 8.95 16 38 H 0.28 7.14 8.30 -40.82 -0.34 6.80 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -30.97 312.24 -5.46 -36.43 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -4.56 Total: 13.78 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -0.80 Total: 11.09 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.21 Total: -47.07 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.30 Total: -33.59 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.72 Total: 14.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.97 -5.46 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306091069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.428 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds