Wall clock time and date at job start Mon Mar 30 2020 04:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47148 * 2 1 4 4 O 1.42904 * 109.47437 * 120.00042 * 2 1 3 5 5 C 1.53000 * 109.47177 * 240.00090 * 2 1 3 6 6 C 1.53000 * 109.47358 * 177.01210 * 5 2 1 7 7 H 1.09003 * 109.99513 * 56.73325 * 6 5 2 8 8 C 1.54324 * 109.88284 * 295.64226 * 6 5 2 9 9 C 1.55153 * 103.10411 * 218.30115 * 8 6 5 10 10 C 1.55388 * 101.36481 * 35.49138 * 9 8 6 11 11 N 1.47022 * 109.88478 * 177.83389 * 6 5 2 12 12 C 1.34774 * 125.64679 * 298.32551 * 11 6 5 13 13 O 1.21443 * 120.00156 * 4.99546 * 12 11 6 14 14 C 1.48831 * 120.00105 * 185.00234 * 12 11 6 15 15 O 1.21504 * 119.99804 * 359.97438 * 14 12 11 16 16 N 1.34774 * 120.00105 * 179.97438 * 14 12 11 17 17 C 1.36119 * 119.99897 * 180.02562 * 16 14 12 18 18 H 1.07996 * 119.99979 * 359.97438 * 17 16 14 19 19 C 1.39583 * 120.00116 * 179.97438 * 17 16 14 20 20 N 1.31012 * 120.00306 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99947 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47024 * 90.00184 * 21 19 17 23 23 H 1.48493 * 109.47203 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.46997 * 330.00260 * 21 19 17 25 25 H 1.08997 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46934 * 299.99846 * 1 2 3 27 27 H 1.08999 * 109.47087 * 60.00080 * 1 2 3 28 28 H 0.96710 * 113.99482 * 60.00005 * 4 2 1 29 29 H 1.09004 * 109.46855 * 57.01174 * 5 2 1 30 30 H 1.08996 * 109.47030 * 297.01297 * 5 2 1 31 31 H 1.09003 * 110.72166 * 336.75139 * 8 6 5 32 32 H 1.08999 * 110.72157 * 99.84743 * 8 6 5 33 33 H 1.08996 * 111.00779 * 153.66902 * 9 8 6 34 34 H 1.08999 * 111.00456 * 277.51693 * 9 8 6 35 35 H 1.09002 * 110.34148 * 204.16598 * 10 9 8 36 36 H 1.09000 * 110.34744 * 81.87457 * 10 9 8 37 37 H 0.97000 * 120.00285 * 359.97438 * 16 14 12 38 38 H 0.97001 * 120.00071 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5681 -0.6565 -1.2875 7 1 3.9823 -1.0846 -0.3746 8 6 4.0278 0.8093 -1.4351 9 6 5.2448 0.7016 -2.3915 10 6 4.7944 -0.4507 -3.3317 11 7 4.0707 -1.3915 -2.4574 12 6 3.8989 -2.7076 -2.6914 13 8 3.2071 -3.3716 -1.9461 14 6 4.5570 -3.3473 -3.8630 15 8 5.2488 -2.6828 -4.6088 16 7 4.3855 -4.6635 -4.0968 17 6 4.9879 -5.2486 -5.1681 18 1 5.6028 -4.6580 -5.8310 19 6 4.8108 -6.6118 -5.4099 20 7 5.3901 -7.1749 -6.4412 21 14 3.7477 -7.6335 -4.2628 22 1 2.3433 -7.6189 -4.7453 23 1 4.2480 -9.0314 -4.2380 24 1 3.8066 -7.0623 -2.8933 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -1.5953 1.2328 29 1 1.6335 -0.2392 -2.1384 30 1 1.7211 -1.7631 -1.2229 31 1 3.2403 1.4175 -1.8802 32 1 4.3301 1.2177 -0.4708 33 1 5.3893 1.6289 -2.9459 34 1 6.1481 0.4301 -1.8453 35 1 5.6621 -0.9374 -3.7770 36 1 4.1322 -0.0689 -4.1087 37 1 3.8335 -5.1940 -3.5012 38 1 5.2673 -8.1224 -6.6090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306091069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:14 Heat of formation + Delta-G solvation = -146.359727 kcal Electronic energy + Delta-G solvation = -21398.840875 eV Core-core repulsion = 18047.220077 eV Total energy + Delta-G solvation = -3351.620798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73202 -39.97559 -38.71687 -38.01467 -36.31489 -34.02490 -33.29269 -32.46524 -30.61114 -28.08022 -26.66061 -25.35926 -22.93529 -22.81868 -21.60404 -21.14774 -19.93982 -18.29134 -18.01032 -17.61379 -17.03837 -16.70276 -16.56210 -16.17639 -15.55952 -15.07428 -14.97111 -14.74906 -14.62462 -14.40906 -14.19893 -13.97406 -13.64719 -13.22429 -13.11354 -12.83156 -12.65845 -12.58267 -12.47175 -12.08554 -11.89042 -11.83355 -11.73631 -11.62040 -11.44352 -11.01906 -10.49086 -10.18307 -9.70674 -8.64046 -6.17668 0.50166 1.26259 1.30130 1.36117 1.59473 2.07966 2.25465 2.86572 3.04890 3.47607 3.57673 3.63499 3.81362 3.86271 4.02929 4.15794 4.25350 4.40448 4.42724 4.52666 4.76266 4.82867 4.89095 4.96533 5.02037 5.07495 5.15238 5.20087 5.25164 5.29717 5.35343 5.44247 5.73045 6.16288 6.29267 6.55319 6.78638 6.83604 7.13637 7.61216 8.50546 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.005138 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.151647 B = 5448.666888 C = 6385.097103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.112 3.888 3 H 0.115 0.885 4 O -0.578 6.578 5 C -0.159 4.159 6 C 0.132 3.868 7 H 0.070 0.930 8 C -0.116 4.116 9 C -0.123 4.123 10 C 0.086 3.914 11 N -0.588 5.588 12 C 0.529 3.471 13 O -0.561 6.561 14 C 0.408 3.592 15 O -0.592 6.592 16 N -0.534 5.534 17 C -0.338 4.338 18 H 0.079 0.921 19 C 0.013 3.987 20 N -0.892 5.892 21 Si 0.946 3.054 22 H -0.252 1.252 23 H -0.256 1.256 24 H -0.251 1.251 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.383 0.617 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.391 0.609 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 15.311 13.232 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.053 3.947 3 H 0.133 0.867 4 O -0.385 6.385 5 C -0.198 4.198 6 C 0.030 3.970 7 H 0.088 0.912 8 C -0.154 4.154 9 C -0.161 4.161 10 C -0.035 4.035 11 N -0.320 5.320 12 C 0.314 3.686 13 O -0.441 6.441 14 C 0.193 3.807 15 O -0.479 6.479 16 N -0.172 5.172 17 C -0.467 4.467 18 H 0.097 0.903 19 C -0.192 4.192 20 N -0.529 5.529 21 Si 0.766 3.234 22 H -0.176 1.176 23 H -0.179 1.179 24 H -0.175 1.175 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.232 0.768 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.887 15.717 13.087 21.920 hybrid contribution -0.580 -1.812 -0.191 1.912 sum -8.467 13.905 12.896 20.769 Atomic orbital electron populations 1.22460 0.95442 1.02632 1.03373 1.21914 0.93481 0.96675 0.82648 0.86697 1.86506 1.77755 1.30061 1.44208 1.22666 0.94810 1.01936 1.00345 1.21872 0.94474 0.93450 0.87223 0.91204 1.22766 0.98393 0.92530 1.01709 1.22917 0.98138 0.98045 0.97036 1.22876 0.97259 0.90062 0.93350 1.48368 1.53155 1.06099 1.24425 1.19640 0.81288 0.82268 0.85436 1.90634 1.40445 1.63248 1.49762 1.19614 0.88600 0.83440 0.89092 1.90538 1.44184 1.62446 1.50700 1.41698 1.42701 1.08101 1.24729 1.19158 1.29246 0.94047 1.04288 0.90341 1.26035 0.97967 0.97078 0.98157 1.69541 1.41518 1.13930 1.27952 0.85624 0.79514 0.79156 0.79133 1.17572 1.17944 1.17484 0.92831 0.91044 0.90701 0.76784 0.90408 0.92497 0.88485 0.87864 0.86894 0.90722 0.90234 0.91141 0.77267 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 9.53 71.98 0.69 -1.96 16 2 C 0.11 1.93 3.47 30.59 0.11 2.04 16 3 H 0.12 1.60 7.25 -2.39 -0.02 1.59 16 4 O -0.58 -11.75 12.75 -148.98 -1.90 -13.65 16 5 C -0.16 -3.63 4.34 30.59 0.13 -3.49 16 6 C 0.13 3.33 2.87 45.34 0.13 3.46 16 7 H 0.07 1.96 7.71 -2.39 -0.02 1.94 16 8 C -0.12 -1.95 5.42 31.78 0.17 -1.77 16 9 C -0.12 -2.36 7.12 32.15 0.23 -2.13 16 10 C 0.09 2.58 6.25 87.02 0.54 3.12 16 11 N -0.59 -19.88 3.07 -789.36 -2.42 -22.30 16 12 C 0.53 22.50 7.71 87.08 0.67 23.18 16 13 O -0.56 -24.53 15.29 -3.54 -0.05 -24.58 16 14 C 0.41 20.47 7.78 87.08 0.68 21.15 16 15 O -0.59 -31.99 13.26 -3.73 -0.05 -32.04 16 16 N -0.53 -27.85 5.06 -308.88 -1.56 -29.41 16 17 C -0.34 -19.77 10.16 84.35 0.86 -18.91 16 18 H 0.08 5.24 7.36 -2.91 -0.02 5.22 16 19 C 0.01 0.69 5.51 85.14 0.47 1.16 16 20 N -0.89 -51.04 13.94 21.76 0.30 -50.74 16 21 Si 0.95 39.88 27.74 68.60 1.90 41.79 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.25 -10.12 6.53 99.48 0.65 -9.47 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.38 6.57 9.05 -74.05 -0.67 5.90 16 29 H 0.08 1.68 8.09 -2.38 -0.02 1.66 16 30 H 0.06 1.64 6.63 -2.39 -0.02 1.62 16 31 H 0.10 1.26 7.77 -2.39 -0.02 1.24 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 2.94 5.86 -2.39 -0.01 2.93 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.39 18.82 5.22 -92.71 -0.48 18.34 16 38 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 Total: -1.00 -70.52 312.24 0.78 -69.75 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.12 Total: 35.34 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 4.68 Total: 25.84 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -3.68 Total: -102.45 kcal Atomic # 8 Polarization: -68.26 SS G_CDS: -2.00 Total: -70.27 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.90 Total: 41.79 kcal Total: -70.52 0.78 -69.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306091069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.612 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds