Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48498 * 109.46586 * 269.99309 * 3 2 1 5 5 H 1.48491 * 109.47288 * 29.99642 * 3 2 1 6 6 H 1.48504 * 109.46906 * 149.99800 * 3 2 1 7 7 C 1.38948 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99775 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00240 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47476 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00135 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47200 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47242 * 54.99327 * 15 14 13 17 17 C 1.53004 * 109.46826 * 294.99901 * 15 14 13 18 18 C 1.52997 * 109.47024 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47504 * 59.99687 * 18 17 15 20 20 C 1.53004 * 109.47236 * 300.00184 * 19 18 17 21 21 H 1.09004 * 109.46741 * 300.00111 * 20 19 18 22 22 C 1.52997 * 109.47236 * 180.02562 * 20 19 18 23 23 O 1.42898 * 109.47319 * 65.00075 * 22 20 19 24 24 C 1.52997 * 109.47024 * 59.99522 * 20 19 18 25 25 H 0.97000 * 120.00013 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00145 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47155 * 59.99888 * 12 10 9 28 28 H 1.09001 * 109.46777 * 300.00040 * 12 10 9 29 29 H 1.00902 * 110.99908 * 303.95177 * 13 12 10 30 30 H 1.08993 * 109.47430 * 59.99582 * 14 13 12 31 31 H 1.09001 * 109.46664 * 299.99737 * 14 13 12 32 32 H 1.09004 * 109.46741 * 299.99732 * 17 15 14 33 33 H 1.09000 * 109.47403 * 59.99868 * 17 15 14 34 34 H 1.09002 * 109.47016 * 179.97438 * 18 17 15 35 35 H 1.09004 * 109.47325 * 299.99623 * 18 17 15 36 36 H 1.09001 * 109.47630 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47346 * 59.99924 * 19 18 17 38 38 H 1.09002 * 109.47153 * 304.99767 * 22 20 19 39 39 H 1.09001 * 109.46832 * 184.99958 * 22 20 19 40 40 H 0.96701 * 113.99881 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.46881 * 60.00674 * 24 20 19 42 42 H 1.09002 * 109.47016 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0005 14 6 1.4982 -7.2708 -0.0017 15 6 2.5232 -8.4068 -0.0016 16 1 3.2037 -8.2821 0.8407 17 6 3.3183 -8.3763 -1.3084 18 6 4.3428 -9.5126 -1.3086 19 6 3.6171 -10.8538 -1.1843 20 6 2.8219 -10.8842 0.1225 21 1 3.5025 -10.7599 0.9649 22 6 2.0966 -12.2256 0.2471 23 8 3.0570 -13.2773 0.3644 24 6 1.7974 -9.7479 0.1227 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6176 -4.9205 -0.8903 28 1 0.6169 -4.9209 0.8897 29 1 2.8333 -5.9121 -0.7819 30 1 0.8736 -7.3446 -0.8919 31 1 0.8731 -7.3459 0.8880 32 1 2.6378 -8.5010 -2.1507 33 1 3.8351 -7.4207 -1.3971 34 1 4.9090 -9.4912 -2.2397 35 1 5.0234 -9.3884 -0.4662 36 1 4.3470 -11.6633 -1.1840 37 1 2.9365 -10.9781 -2.0266 38 1 1.4833 -12.3907 -0.6388 39 1 1.4607 -12.2139 1.1323 40 1 2.6672 -14.1584 0.4469 41 1 1.1168 -9.8722 -0.7197 42 1 1.2312 -9.7693 1.0539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310163841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = -118.354517 kcal Electronic energy + Delta-G solvation = -20506.522837 eV Core-core repulsion = 17291.949531 eV Total energy + Delta-G solvation = -3214.573306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.43708 -38.20022 -36.92333 -35.15596 -33.82208 -31.69769 -31.40186 -31.07934 -27.12471 -25.81092 -24.78356 -23.15629 -22.19840 -20.38033 -19.91685 -19.18056 -17.86163 -17.58619 -16.19417 -15.54385 -15.49546 -15.36963 -14.49459 -14.39953 -14.22661 -14.15868 -13.86800 -13.46451 -13.23148 -13.00411 -12.75841 -12.18966 -11.95502 -11.85303 -11.54619 -11.47158 -11.35173 -11.14000 -11.06342 -10.94847 -10.49460 -10.37825 -10.33843 -10.22596 -10.17053 -9.99012 -9.48792 -8.41573 -7.99881 -7.92789 -6.39645 -3.80354 3.19374 3.27741 3.34098 3.83932 3.94109 4.15876 4.43701 4.47845 4.60432 4.74555 4.88664 5.04813 5.15944 5.18806 5.24587 5.27173 5.30809 5.38750 5.42330 5.49778 5.56095 5.62601 5.71985 5.81495 5.84698 5.94242 6.02749 6.05083 6.13684 6.14847 6.22512 6.28642 6.31809 6.45852 7.29919 7.30637 7.57257 7.74161 8.08961 8.63964 9.20189 9.56989 10.08709 10.78211 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.056195 B = 0.002700 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.148865 B =10367.935378 C =10679.189995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.064 3.936 15 C -0.082 4.082 16 H 0.082 0.918 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.086 4.086 21 H 0.078 0.922 22 C 0.079 3.921 23 O -0.573 6.573 24 C -0.106 4.106 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.348 0.652 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.377 0.623 41 H 0.062 0.938 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -22.780 -1.619 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.303 5.303 14 C -0.066 4.066 15 C -0.101 4.101 16 H 0.100 0.900 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.105 4.105 21 H 0.096 0.904 22 C 0.002 3.998 23 O -0.379 6.379 24 C -0.144 4.144 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.169 0.831 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.223 0.777 41 H 0.081 0.919 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.734 -22.076 -0.982 22.110 hybrid contribution -1.139 0.403 -0.856 1.481 sum -0.405 -21.674 -1.838 21.755 Atomic orbital electron populations 1.69615 1.05934 1.28114 1.50766 1.25265 0.95643 0.99721 0.97397 0.85853 0.79257 0.80805 0.78352 1.20442 1.20934 1.19396 1.19707 0.93373 0.82254 1.47463 0.87934 1.41870 1.09195 1.04613 1.64494 1.19841 0.88396 0.84752 0.84331 1.90519 1.13785 1.87095 1.55319 1.21671 0.94432 0.91069 1.01103 1.60112 1.18818 0.99953 1.51380 1.22001 0.95366 0.89074 1.00162 1.21118 0.97174 0.92887 0.98947 0.89964 1.21639 0.97901 0.98985 0.97142 1.21522 0.97913 0.94344 1.01836 1.21515 0.99095 0.97545 0.96458 1.21139 0.97636 0.92273 0.99442 0.90384 1.22268 0.90622 0.87613 0.99345 1.86490 1.36378 1.18095 1.96887 1.21518 0.97318 0.93583 1.01968 0.91906 0.77468 0.94018 0.89667 0.83123 0.95695 0.91204 0.92372 0.91206 0.92112 0.91825 0.91583 0.92448 0.93792 0.93729 0.77707 0.91909 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.61 5.29 -10.96 -0.06 -14.66 16 10 C 0.44 10.69 7.82 -10.98 -0.09 10.60 16 11 O -0.58 -16.21 15.78 5.54 0.09 -16.12 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 13 N -0.67 -11.20 6.12 -115.06 -0.70 -11.91 16 14 C 0.06 0.81 5.14 -3.83 -0.02 0.79 16 15 C -0.08 -0.91 2.40 -90.62 -0.22 -1.13 16 16 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.12 -1.30 4.97 -26.73 -0.13 -1.43 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.34 16 19 C -0.11 -1.01 5.10 -26.73 -0.14 -1.15 16 20 C -0.09 -0.78 2.43 -90.62 -0.22 -1.00 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 C 0.08 0.61 6.43 37.16 0.24 0.85 16 23 O -0.57 -4.76 13.19 -35.23 -0.46 -5.22 16 24 C -0.11 -0.95 4.48 -26.73 -0.12 -1.07 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.35 6.02 6.68 -39.29 -0.26 5.75 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.86 6.68 -51.93 -0.35 0.52 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 1.41 9.12 45.56 0.42 1.82 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -32.28 338.01 -7.82 -40.10 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -6.35 Total: 12.70 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.12 Total: -2.13 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.04 Total: -50.69 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.38 Total: -21.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.28 -7.82 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310163841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.254 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds