Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48498 * 109.46586 * 269.99309 * 3 2 1 5 5 H 1.48491 * 109.47288 * 29.99642 * 3 2 1 6 6 H 1.48504 * 109.46906 * 149.99800 * 3 2 1 7 7 C 1.38948 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99775 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00240 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47476 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00135 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47200 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47242 * 54.99327 * 15 14 13 17 17 C 1.53004 * 109.46826 * 294.99901 * 15 14 13 18 18 C 1.52997 * 109.47024 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47504 * 59.99687 * 18 17 15 20 20 C 1.53004 * 109.47236 * 300.00184 * 19 18 17 21 21 H 1.09004 * 109.46741 * 300.00111 * 20 19 18 22 22 C 1.52997 * 109.47236 * 180.02562 * 20 19 18 23 23 O 1.42898 * 109.47319 * 65.00075 * 22 20 19 24 24 C 1.52997 * 109.47024 * 59.99522 * 20 19 18 25 25 H 0.97000 * 120.00013 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00145 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47155 * 59.99888 * 12 10 9 28 28 H 1.09001 * 109.46777 * 300.00040 * 12 10 9 29 29 H 1.00902 * 110.99908 * 303.95177 * 13 12 10 30 30 H 1.08993 * 109.47430 * 59.99582 * 14 13 12 31 31 H 1.09001 * 109.46664 * 299.99737 * 14 13 12 32 32 H 1.09004 * 109.46741 * 299.99732 * 17 15 14 33 33 H 1.09000 * 109.47403 * 59.99868 * 17 15 14 34 34 H 1.09002 * 109.47016 * 179.97438 * 18 17 15 35 35 H 1.09004 * 109.47325 * 299.99623 * 18 17 15 36 36 H 1.09001 * 109.47630 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47346 * 59.99924 * 19 18 17 38 38 H 1.09002 * 109.47153 * 304.99767 * 22 20 19 39 39 H 1.09001 * 109.46832 * 184.99958 * 22 20 19 40 40 H 0.96701 * 113.99881 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.46881 * 60.00674 * 24 20 19 42 42 H 1.09002 * 109.47016 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0005 14 6 1.4982 -7.2708 -0.0017 15 6 2.5232 -8.4068 -0.0016 16 1 3.2037 -8.2821 0.8407 17 6 3.3183 -8.3763 -1.3084 18 6 4.3428 -9.5126 -1.3086 19 6 3.6171 -10.8538 -1.1843 20 6 2.8219 -10.8842 0.1225 21 1 3.5025 -10.7599 0.9649 22 6 2.0966 -12.2256 0.2471 23 8 3.0570 -13.2773 0.3644 24 6 1.7974 -9.7479 0.1227 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6176 -4.9205 -0.8903 28 1 0.6169 -4.9209 0.8897 29 1 2.8333 -5.9121 -0.7819 30 1 0.8736 -7.3446 -0.8919 31 1 0.8731 -7.3459 0.8880 32 1 2.6378 -8.5010 -2.1507 33 1 3.8351 -7.4207 -1.3971 34 1 4.9090 -9.4912 -2.2397 35 1 5.0234 -9.3884 -0.4662 36 1 4.3470 -11.6633 -1.1840 37 1 2.9365 -10.9781 -2.0266 38 1 1.4833 -12.3907 -0.6388 39 1 1.4607 -12.2139 1.1323 40 1 2.6672 -14.1584 0.4469 41 1 1.1168 -9.8722 -0.7197 42 1 1.2312 -9.7693 1.0539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310163841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = -143.333673 kcal Electronic energy + Delta-G solvation = -20507.606014 eV Core-core repulsion = 17291.949531 eV Total energy + Delta-G solvation = -3215.656484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39401 -39.93346 -37.69035 -36.40054 -35.76463 -33.30467 -32.51753 -32.22749 -28.61118 -26.55916 -26.41621 -24.47766 -23.00111 -21.27092 -21.04497 -20.68368 -19.91163 -18.18110 -17.83483 -17.05481 -16.53102 -16.30839 -16.07838 -15.81712 -15.50105 -15.11710 -15.05611 -14.75109 -14.35409 -14.28852 -13.69529 -13.50451 -13.42512 -13.11382 -12.86569 -12.71910 -12.67149 -12.42497 -12.20734 -12.12395 -11.92303 -11.82706 -11.51692 -11.32466 -11.05917 -10.96221 -10.70416 -10.34257 -10.02627 -9.29667 -8.47448 -5.96393 1.37627 1.41332 1.54425 2.04104 2.28860 2.91614 3.19596 3.35050 3.59722 3.74639 3.82259 3.96418 4.11936 4.30380 4.35210 4.40164 4.43108 4.50282 4.55559 4.60114 4.60476 4.69206 4.74575 4.77575 4.84067 4.88593 4.98422 5.11921 5.26982 5.31006 5.31928 5.40122 5.45317 5.46129 5.61321 5.90774 6.13412 6.42861 6.59451 6.95584 7.11654 7.55129 8.10630 8.70007 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.056195 B = 0.002700 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.148865 B =10367.935378 C =10679.189995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.064 3.936 13 N -0.686 5.686 14 C 0.066 3.934 15 C -0.078 4.078 16 H 0.063 0.937 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.087 4.087 21 H 0.060 0.940 22 C 0.081 3.919 23 O -0.595 6.595 24 C -0.098 4.098 25 H 0.278 0.722 26 H 0.397 0.603 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.343 0.657 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.395 0.605 41 H 0.075 0.925 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -23.663 -1.887 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.097 4.097 16 H 0.081 0.919 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.141 4.141 20 C -0.106 4.106 21 H 0.079 0.921 22 C 0.003 3.997 23 O -0.403 6.403 24 C -0.136 4.136 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.162 0.838 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.094 0.906 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.634 -22.996 -1.247 23.039 hybrid contribution -0.706 0.617 -0.768 1.211 sum -1.340 -22.380 -2.015 22.510 Atomic orbital electron populations 1.69672 1.06817 1.29337 1.50285 1.26058 0.96583 1.02445 0.96238 0.84917 0.77856 0.76802 0.78695 1.19529 1.19435 1.19859 1.19666 0.92690 0.84062 1.49998 0.90408 1.41937 1.09349 1.04710 1.65041 1.20920 0.88264 0.86234 0.82166 1.90487 1.15945 1.87994 1.56686 1.21543 0.94082 0.88161 1.03047 1.60128 1.19182 1.01169 1.51475 1.22093 0.95670 0.87309 1.01218 1.21055 0.96707 0.93737 0.98164 0.91900 1.21601 0.98103 0.98234 0.97496 1.21502 0.97699 0.94679 1.01607 1.21459 0.99038 0.96506 0.97055 1.21121 0.97494 0.93490 0.98497 0.92109 1.22244 0.90342 0.86631 1.00468 1.86439 1.37425 1.19481 1.96971 1.21443 0.97160 0.91923 1.03027 0.91252 0.76923 0.91621 0.87793 0.83792 0.94167 0.90323 0.91433 0.93246 0.91690 0.92947 0.92265 0.91538 0.92488 0.92663 0.75524 0.90591 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.07 13.05 21.66 0.28 -49.78 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.33 -19.34 9.68 84.04 0.81 -18.52 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -30.00 5.29 -306.98 -1.62 -31.62 16 10 C 0.44 21.35 7.82 87.66 0.69 22.04 16 11 O -0.62 -35.66 15.78 -3.07 -0.05 -35.71 16 12 C 0.06 2.26 6.17 85.56 0.53 2.79 16 13 N -0.69 -22.46 6.12 -517.95 -3.17 -25.64 16 14 C 0.07 1.54 5.14 86.30 0.44 1.98 16 15 C -0.08 -1.63 2.40 -10.79 -0.03 -1.66 16 16 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.12 -2.48 4.97 30.59 0.15 -2.33 16 18 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 19 C -0.10 -1.79 5.10 30.59 0.16 -1.63 16 20 C -0.09 -1.45 2.43 -10.79 -0.03 -1.47 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 C 0.08 1.05 6.43 71.98 0.46 1.52 16 23 O -0.59 -8.84 13.19 -148.98 -1.97 -10.80 16 24 C -0.10 -1.53 4.48 30.59 0.14 -1.39 16 25 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.40 19.62 7.90 -92.71 -0.73 18.88 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 28 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.34 11.88 6.68 -89.69 -0.60 11.28 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.25 6.68 -2.39 -0.02 1.23 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.06 1.12 7.82 -2.39 -0.02 1.10 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.40 2.19 9.12 -74.06 -0.68 1.51 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.65 338.01 -1.51 -71.15 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.98 Total: 38.07 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 3.97 Total: -1.08 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.51 Total: -107.04 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -2.01 Total: -46.51 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.65 -1.51 -71.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310163841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.179 kcal (2) G-P(sol) polarization free energy of solvation -69.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds