Wall clock time and date at job start Mon Mar 30 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00005 * 2 1 4 4 C 1.50697 * 109.47329 * 270.00633 * 3 2 1 5 5 H 1.07997 * 120.00100 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99910 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00077 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99985 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47033 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46973 * 120.00078 * 8 6 4 11 11 H 1.48494 * 109.47406 * 240.00356 * 8 6 4 12 12 C 1.34776 * 120.00068 * 180.02562 * 2 1 3 13 13 O 1.21586 * 119.99698 * 171.35227 * 12 2 1 14 14 N 1.34774 * 119.99982 * 351.35228 * 12 2 1 15 15 C 1.46493 * 120.00165 * 354.11126 * 14 12 2 16 16 C 1.46503 * 119.99929 * 174.10846 * 14 12 2 17 17 C 1.50703 * 112.85065 * 299.65768 * 16 14 12 18 18 O 1.20819 * 119.99995 * 205.33329 * 17 16 14 19 19 O 1.34222 * 120.00028 * 25.60569 * 17 16 14 20 20 C 1.53782 * 113.61188 * 70.84949 * 16 14 12 21 21 C 1.53960 * 87.01914 * 89.23133 * 20 16 14 22 22 C 1.53778 * 113.61501 * 168.45795 * 16 14 12 23 23 H 1.09005 * 109.47247 * 265.99264 * 1 2 3 24 24 H 1.08998 * 109.47477 * 25.99147 * 1 2 3 25 25 H 1.09002 * 109.47485 * 145.99167 * 1 2 3 26 26 H 1.09003 * 109.46753 * 30.00611 * 3 2 1 27 27 H 1.09001 * 109.47161 * 150.00179 * 3 2 1 28 28 H 0.97001 * 120.00078 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47570 * 203.98416 * 15 14 12 30 30 H 1.09005 * 109.47046 * 323.98118 * 15 14 12 31 31 H 1.09005 * 109.47374 * 83.97881 * 15 14 12 32 32 H 0.96702 * 117.00692 * 179.72773 * 19 17 16 33 33 H 1.09003 * 113.61427 * 203.74841 * 20 16 14 34 34 H 1.09001 * 113.61548 * 334.65437 * 20 16 14 35 35 H 1.08999 * 113.53768 * 270.81213 * 21 20 16 36 36 H 1.08992 * 113.74534 * 139.93932 * 21 20 16 37 37 H 1.08999 * 113.61114 * 25.34713 * 22 16 14 38 38 H 1.09002 * 113.61674 * 156.16806 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1258 2.8782 -1.6726 7 7 3.5523 3.6187 -0.6730 8 14 3.4377 3.4172 -3.4338 9 1 2.8605 2.4168 -4.3672 10 1 2.7995 4.7376 -3.6676 11 1 4.9002 3.5261 -3.6666 12 6 2.1388 -1.1672 -0.0005 13 8 3.3443 -1.1730 -0.1589 14 7 1.4765 -2.3278 0.1745 15 6 0.0467 -2.3144 0.4934 16 6 2.1863 -3.6029 0.0456 17 6 2.7890 -3.8017 -1.3212 18 8 2.9906 -4.9184 -1.7360 19 8 3.1070 -2.7380 -2.0756 20 6 3.1664 -3.8814 1.1975 21 6 1.9897 -4.5518 1.9298 22 6 1.3766 -4.8117 0.5436 23 1 -0.3634 -0.0718 1.0252 24 1 -0.3634 0.9237 -0.4503 25 1 -0.3634 -0.8519 -0.5748 26 1 1.6084 2.0283 0.5140 27 1 3.1499 1.1384 0.5138 28 1 4.0292 4.4446 -0.8502 29 1 -0.2207 -3.2402 1.0028 30 1 -0.1729 -1.4663 1.1420 31 1 -0.5302 -2.2265 -0.4273 32 1 3.4948 -2.9154 -2.9435 33 1 3.9665 -4.5725 0.9325 34 1 3.5305 -2.9791 1.6888 35 1 1.4084 -3.8624 2.5420 36 1 2.2655 -5.4617 2.4627 37 1 0.2979 -4.6593 0.5078 38 1 1.6855 -5.7575 0.0984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310504699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:54 Heat of formation + Delta-G solvation = -31.354427 kcal Electronic energy + Delta-G solvation = -22389.174080 eV Core-core repulsion = 19042.540287 eV Total energy + Delta-G solvation = -3346.633794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17622 -39.29535 -37.92705 -35.72535 -35.09427 -33.85400 -32.22697 -28.76571 -27.33119 -26.74378 -25.87894 -24.00656 -22.81500 -21.98507 -20.01968 -18.48295 -17.83852 -17.06044 -16.58981 -16.26621 -15.98258 -15.20434 -15.10747 -14.92234 -14.30831 -14.24575 -13.27259 -13.00877 -12.92107 -12.85833 -12.68548 -12.23951 -11.99012 -11.79694 -11.43784 -11.21483 -11.14329 -11.03175 -10.80470 -10.67113 -10.56325 -10.31369 -10.18191 -10.03756 -9.52242 -9.05479 -8.41070 -8.36298 -7.44162 -5.97714 -4.00725 2.31345 3.01483 3.28506 3.33396 3.40917 3.45763 3.98084 4.18508 4.43983 4.46621 4.58766 4.71311 4.96696 5.07088 5.29744 5.36188 5.45781 5.53722 5.59635 5.65976 5.76597 5.81083 5.86195 5.95819 6.04758 6.11433 6.27982 6.57445 6.77405 6.93978 7.37505 7.60214 7.73563 8.01415 8.21693 8.32218 8.72889 9.01289 9.42290 9.64902 11.10243 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.006077 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.221455 B = 4606.353006 C = 5096.755717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.616 5.616 3 C 0.264 3.736 4 C -0.515 4.515 5 H 0.058 0.942 6 C 0.058 3.942 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.708 3.292 13 O -0.555 6.555 14 N -0.621 5.621 15 C 0.051 3.949 16 C 0.179 3.821 17 C 0.489 3.511 18 O -0.533 6.533 19 O -0.475 6.475 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.129 4.129 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 -14.707 4.469 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.353 5.353 3 C 0.145 3.855 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.143 4.143 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.411 3.589 13 O -0.429 6.429 14 N -0.362 5.362 15 C -0.091 4.091 16 C 0.089 3.911 17 C 0.331 3.669 18 O -0.424 6.424 19 O -0.282 6.282 20 C -0.164 4.164 21 C -0.171 4.171 22 C -0.166 4.166 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.256 0.744 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.771 -14.660 4.685 17.241 hybrid contribution 0.365 0.381 -1.731 1.810 sum -7.406 -14.279 2.954 16.354 Atomic orbital electron populations 1.22591 0.82492 1.03582 0.99340 1.47334 1.05411 1.06155 1.76386 1.19165 0.91969 0.77026 0.97354 1.21506 1.35698 1.05694 0.92561 0.92413 1.24927 0.95594 0.96505 0.97259 1.69941 1.38948 1.14422 1.30548 0.86459 0.77987 0.78157 0.84874 1.19909 1.21125 1.20990 1.15803 0.85257 0.79621 0.78243 1.90895 1.12192 1.84928 1.54901 1.46716 1.09235 1.03163 1.77132 1.22970 0.81401 1.03963 1.00780 1.20873 0.95545 0.86097 0.88563 1.23667 0.74172 0.82029 0.87020 1.90653 1.52884 1.26129 1.72721 1.84900 1.73516 1.37731 1.32098 1.23260 0.96585 1.02069 0.94527 1.22837 0.97457 1.01068 0.95737 1.23395 1.00278 0.96491 0.96433 0.93773 0.91465 0.90603 0.95138 0.94185 0.92918 0.91527 0.88485 0.92475 0.74387 0.88961 0.89092 0.89533 0.90399 0.89422 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.63 59.84 0.52 1.51 16 2 N -0.62 -13.21 2.86 -188.74 -0.54 -13.75 16 3 C 0.26 6.95 5.08 -5.19 -0.03 6.93 16 4 C -0.52 -14.80 9.39 -34.44 -0.32 -15.13 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 7 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 12 C 0.71 15.03 7.04 -86.92 -0.61 14.42 16 13 O -0.55 -14.03 13.45 -16.85 -0.23 -14.25 16 14 N -0.62 -9.92 2.83 -172.67 -0.49 -10.41 16 15 C 0.05 0.57 8.15 59.84 0.49 1.06 16 16 C 0.18 2.66 0.93 -132.16 -0.12 2.53 16 17 C 0.49 8.37 7.46 36.01 0.27 8.64 16 18 O -0.53 -9.42 16.80 -18.75 -0.31 -9.73 16 19 O -0.48 -8.73 10.49 -46.60 -0.49 -9.22 16 20 C -0.13 -1.72 7.04 -25.82 -0.18 -1.90 16 21 C -0.13 -1.33 7.76 -25.82 -0.20 -1.53 16 22 C -0.13 -1.37 6.65 -25.92 -0.17 -1.55 16 23 H 0.04 0.57 6.32 -51.93 -0.33 0.24 16 24 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 25 H 0.08 1.03 4.35 -51.93 -0.23 0.80 16 26 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.04 1.18 7.56 -51.93 -0.39 0.79 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.07 0.57 5.08 -51.93 -0.26 0.31 16 30 H 0.10 1.06 4.44 -51.93 -0.23 0.83 16 31 H 0.06 0.61 6.27 -51.93 -0.33 0.28 16 32 H 0.40 5.51 9.10 45.56 0.41 5.92 16 33 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.09 1.45 7.65 -51.93 -0.40 1.05 16 35 H 0.09 0.82 7.95 -51.93 -0.41 0.41 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.77 5.72 -51.93 -0.30 0.48 16 38 H 0.11 1.17 7.38 -51.93 -0.38 0.78 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -36.05 304.45 -6.29 -42.34 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.07 Total: 2.86 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -0.46 Total: 16.57 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.29 Total: -50.35 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.03 Total: -33.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.05 -6.29 -42.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310504699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.981 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds