Wall clock time and date at job start Mon Mar 30 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00005 * 2 1 4 4 C 1.50697 * 109.47329 * 270.00633 * 3 2 1 5 5 H 1.07997 * 120.00100 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99910 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00077 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99985 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47033 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46973 * 120.00078 * 8 6 4 11 11 H 1.48494 * 109.47406 * 240.00356 * 8 6 4 12 12 C 1.34776 * 120.00068 * 180.02562 * 2 1 3 13 13 O 1.21586 * 119.99698 * 171.35227 * 12 2 1 14 14 N 1.34774 * 119.99982 * 351.35228 * 12 2 1 15 15 C 1.46493 * 120.00165 * 354.11126 * 14 12 2 16 16 C 1.46503 * 119.99929 * 174.10846 * 14 12 2 17 17 C 1.50703 * 112.85065 * 299.65768 * 16 14 12 18 18 O 1.20819 * 119.99995 * 205.33329 * 17 16 14 19 19 O 1.34222 * 120.00028 * 25.60569 * 17 16 14 20 20 C 1.53782 * 113.61188 * 70.84949 * 16 14 12 21 21 C 1.53960 * 87.01914 * 89.23133 * 20 16 14 22 22 C 1.53778 * 113.61501 * 168.45795 * 16 14 12 23 23 H 1.09005 * 109.47247 * 265.99264 * 1 2 3 24 24 H 1.08998 * 109.47477 * 25.99147 * 1 2 3 25 25 H 1.09002 * 109.47485 * 145.99167 * 1 2 3 26 26 H 1.09003 * 109.46753 * 30.00611 * 3 2 1 27 27 H 1.09001 * 109.47161 * 150.00179 * 3 2 1 28 28 H 0.97001 * 120.00078 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47570 * 203.98416 * 15 14 12 30 30 H 1.09005 * 109.47046 * 323.98118 * 15 14 12 31 31 H 1.09005 * 109.47374 * 83.97881 * 15 14 12 32 32 H 0.96702 * 117.00692 * 179.72773 * 19 17 16 33 33 H 1.09003 * 113.61427 * 203.74841 * 20 16 14 34 34 H 1.09001 * 113.61548 * 334.65437 * 20 16 14 35 35 H 1.08999 * 113.53768 * 270.81213 * 21 20 16 36 36 H 1.08992 * 113.74534 * 139.93932 * 21 20 16 37 37 H 1.08999 * 113.61114 * 25.34713 * 22 16 14 38 38 H 1.09002 * 113.61674 * 156.16806 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2417 6 6 3.1258 2.8782 -1.6726 7 7 3.5523 3.6187 -0.6730 8 14 3.4377 3.4172 -3.4338 9 1 2.8605 2.4168 -4.3672 10 1 2.7995 4.7376 -3.6676 11 1 4.9002 3.5261 -3.6666 12 6 2.1388 -1.1672 -0.0005 13 8 3.3443 -1.1730 -0.1589 14 7 1.4765 -2.3278 0.1745 15 6 0.0467 -2.3144 0.4934 16 6 2.1863 -3.6029 0.0456 17 6 2.7890 -3.8017 -1.3212 18 8 2.9906 -4.9184 -1.7360 19 8 3.1070 -2.7380 -2.0756 20 6 3.1664 -3.8814 1.1975 21 6 1.9897 -4.5518 1.9298 22 6 1.3766 -4.8117 0.5436 23 1 -0.3634 -0.0718 1.0252 24 1 -0.3634 0.9237 -0.4503 25 1 -0.3634 -0.8519 -0.5748 26 1 1.6084 2.0283 0.5140 27 1 3.1499 1.1384 0.5138 28 1 4.0292 4.4446 -0.8502 29 1 -0.2207 -3.2402 1.0028 30 1 -0.1729 -1.4663 1.1420 31 1 -0.5302 -2.2265 -0.4273 32 1 3.4948 -2.9154 -2.9435 33 1 3.9665 -4.5725 0.9325 34 1 3.5305 -2.9791 1.6888 35 1 1.4084 -3.8624 2.5420 36 1 2.2655 -5.4617 2.4627 37 1 0.2979 -4.6593 0.5078 38 1 1.6855 -5.7575 0.0984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310504699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:54 Heat of formation + Delta-G solvation = -57.146589 kcal Electronic energy + Delta-G solvation = -22390.292512 eV Core-core repulsion = 19042.540287 eV Total energy + Delta-G solvation = -3347.752226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41075 -40.74821 -39.18883 -37.12463 -36.71227 -35.48502 -34.11760 -30.18072 -29.03742 -27.96554 -27.03424 -25.46871 -24.50549 -23.16534 -21.44755 -19.70578 -19.20732 -18.68860 -18.34941 -17.67429 -17.29193 -16.74709 -16.56308 -16.33827 -15.88825 -15.42713 -14.78616 -14.52424 -14.32356 -14.23127 -14.07561 -13.51437 -13.31359 -13.24489 -13.05136 -12.67672 -12.60914 -12.51953 -12.45904 -12.18710 -11.92143 -11.68117 -11.60318 -11.48348 -11.35236 -10.63326 -10.60134 -9.82927 -9.05343 -8.17037 -6.30854 1.00993 1.36128 1.38697 1.50129 1.68232 2.06436 2.37917 2.51424 3.03094 3.11126 3.26946 3.46853 3.74939 4.02748 4.13192 4.27290 4.39201 4.51762 4.65936 4.74708 4.75078 4.87747 4.89230 4.94546 5.01161 5.04810 5.15017 5.23319 5.26832 5.46531 5.62867 5.66301 5.84742 6.08404 6.14204 6.78274 6.95050 7.19251 7.35688 7.84714 8.88656 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.006077 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.221455 B = 4606.353006 C = 5096.755717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.627 5.627 3 C 0.282 3.718 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.703 3.297 13 O -0.609 6.609 14 N -0.611 5.611 15 C 0.039 3.961 16 C 0.157 3.843 17 C 0.483 3.517 18 O -0.544 6.544 19 O -0.500 6.500 20 C -0.136 4.136 21 C -0.113 4.113 22 C -0.110 4.110 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.104 0.896 26 H 0.025 0.975 27 H -0.005 1.005 28 H 0.266 0.734 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.410 0.590 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -16.281 4.560 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.363 5.363 3 C 0.160 3.840 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.192 4.192 7 N -0.571 5.571 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.405 3.595 13 O -0.487 6.487 14 N -0.351 5.351 15 C -0.101 4.101 16 C 0.069 3.931 17 C 0.326 3.674 18 O -0.435 6.435 19 O -0.310 6.310 20 C -0.175 4.175 21 C -0.150 4.150 22 C -0.147 4.147 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.122 0.878 26 H 0.043 0.957 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.270 0.730 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.210 -16.278 4.786 19.802 hybrid contribution 1.127 0.829 -1.743 2.235 sum -9.083 -15.449 3.042 18.178 Atomic orbital electron populations 1.22987 0.78899 1.04322 1.02167 1.47186 1.07606 1.04763 1.76752 1.18586 0.90518 0.79237 0.95630 1.21720 1.36037 1.05855 0.93281 0.93486 1.25799 0.95179 0.96553 1.01647 1.70047 1.39437 1.14886 1.32732 0.85410 0.77755 0.78271 0.79573 1.19520 1.19382 1.20912 1.16022 0.84817 0.80794 0.77829 1.90846 1.14776 1.86040 1.57066 1.46570 1.10944 1.01779 1.75774 1.23274 0.78349 1.06421 1.02026 1.21442 0.97221 0.87092 0.87391 1.24249 0.73918 0.81579 0.87654 1.90630 1.53527 1.26221 1.73159 1.84906 1.73877 1.38939 1.33268 1.23326 0.97987 1.01248 0.94933 1.22817 0.94849 1.01788 0.95507 1.23421 1.01370 0.94130 0.95782 0.90076 0.92632 0.87791 0.95708 0.98718 0.92537 0.87665 0.87904 0.91054 0.73035 0.89085 0.92269 0.88427 0.87753 0.86542 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.69 8.63 127.77 1.10 2.79 16 2 N -0.63 -27.12 2.86 -869.32 -2.48 -29.61 16 3 C 0.28 15.45 5.08 85.63 0.44 15.88 16 4 C -0.53 -31.30 9.39 25.60 0.24 -31.06 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 8 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.70 30.24 7.04 179.06 1.26 31.50 16 13 O -0.61 -32.30 13.45 17.18 0.23 -32.07 16 14 N -0.61 -18.57 2.83 -818.47 -2.32 -20.89 16 15 C 0.04 0.72 8.15 127.77 1.04 1.76 16 16 C 0.16 4.47 0.93 3.38 0.00 4.47 16 17 C 0.48 16.47 7.46 71.24 0.53 17.00 16 18 O -0.54 -18.92 16.80 21.98 0.37 -18.55 16 19 O -0.50 -18.93 10.49 -44.30 -0.46 -19.40 16 20 C -0.14 -3.65 7.04 31.18 0.22 -3.43 16 21 C -0.11 -1.83 7.76 31.18 0.24 -1.59 16 22 C -0.11 -1.92 6.65 31.12 0.21 -1.71 16 23 H 0.08 1.82 6.32 -2.38 -0.02 1.81 16 24 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 25 H 0.10 2.49 4.35 -2.39 -0.01 2.48 16 26 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 27 H -0.01 -0.33 7.56 -2.39 -0.02 -0.35 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.11 1.18 5.08 -2.39 -0.01 1.17 16 30 H 0.10 1.83 4.44 -2.38 -0.01 1.82 16 31 H 0.07 1.18 6.27 -2.38 -0.01 1.17 16 32 H 0.41 11.91 9.10 -74.06 -0.67 11.24 16 33 H 0.09 2.39 8.09 -2.39 -0.02 2.37 16 34 H 0.06 1.95 7.65 -2.39 -0.02 1.93 16 35 H 0.10 1.42 7.95 -2.39 -0.02 1.40 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 1.38 5.72 -2.39 -0.01 1.36 16 38 H 0.11 1.98 7.38 -2.39 -0.02 1.96 16 Total: -1.00 -82.60 304.45 3.82 -78.78 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.43 Total: 13.86 kcal Atomic # 6 Polarization: 30.72 SS G_CDS: 5.75 Total: 36.47 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.52 Total: -107.23 kcal Atomic # 8 Polarization: -70.14 SS G_CDS: 0.14 Total: -70.01 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -82.60 3.82 -78.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310504699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.638 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds