Wall clock time and date at job start Mon Mar 30 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00161 * 3 2 1 5 5 H 1.48493 * 109.47018 * 30.00551 * 3 2 1 6 6 H 1.48502 * 109.46990 * 150.00467 * 3 2 1 7 7 C 1.37876 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00531 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99713 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47359 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00465 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99900 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00302 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99987 * 174.81188 * 13 11 10 15 15 C 1.53003 * 109.47703 * 303.31075 * 14 13 11 16 16 C 1.52999 * 109.46744 * 305.32669 * 15 14 13 17 17 O 1.42896 * 109.47260 * 174.87814 * 16 15 14 18 18 C 1.53001 * 109.46981 * 183.30358 * 14 13 11 19 19 C 1.52988 * 109.47582 * 300.00507 * 18 14 13 20 20 C 1.53003 * 109.47315 * 299.99806 * 19 18 14 21 21 C 1.53008 * 109.46789 * 59.99884 * 20 19 18 22 22 C 1.53002 * 109.47172 * 300.00185 * 21 20 19 23 23 H 0.97004 * 119.99623 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47019 * 60.00435 * 9 7 2 25 25 H 1.08997 * 109.47238 * 300.00510 * 9 7 2 26 26 H 0.97005 * 119.99679 * 359.97438 * 10 9 7 27 27 H 0.96996 * 119.99942 * 354.54569 * 13 11 10 28 28 H 1.09002 * 109.46971 * 65.32132 * 15 14 13 29 29 H 1.08991 * 109.47140 * 185.32677 * 15 14 13 30 30 H 1.09007 * 109.47102 * 294.88163 * 16 15 14 31 31 H 1.09000 * 109.47469 * 54.87781 * 16 15 14 32 32 H 0.96701 * 114.00120 * 179.97438 * 17 16 15 33 33 H 1.09000 * 109.46787 * 60.01024 * 18 14 13 34 34 H 1.09004 * 109.46809 * 179.97438 * 18 14 13 35 35 H 1.09001 * 109.47480 * 180.02562 * 19 18 14 36 36 H 1.09004 * 109.47507 * 59.99866 * 19 18 14 37 37 H 1.08998 * 109.47315 * 300.00469 * 20 19 18 38 38 H 1.08999 * 109.47472 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.46838 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46714 * 60.00217 * 21 20 19 41 41 H 1.08999 * 109.46848 * 299.99882 * 22 21 20 42 42 H 1.08994 * 109.47087 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0016 14 6 2.1452 -7.2856 0.1126 15 6 1.3138 -7.4300 1.3889 16 6 2.1392 -6.9653 2.5904 17 8 1.3252 -6.9871 3.7646 18 6 3.3378 -8.2424 0.1697 19 6 4.1690 -8.0980 -1.1065 20 6 3.3019 -8.4360 -2.3210 21 6 2.1093 -7.4792 -2.3782 22 6 1.2780 -7.6235 -1.1018 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 3.1567 -3.4354 -0.0009 27 1 3.5803 -5.7329 -0.0814 28 1 0.4146 -6.8193 1.3078 29 1 1.0328 -8.4745 1.5232 30 1 2.9907 -7.6322 2.7260 31 1 2.4968 -5.9507 2.4150 32 1 1.7847 -6.7042 4.5671 33 1 3.9555 -8.0016 1.0349 34 1 2.9773 -9.2675 0.2551 35 1 5.0184 -8.7800 -1.0661 36 1 4.5295 -7.0728 -1.1915 37 1 2.9414 -9.4611 -2.2361 38 1 3.8940 -8.3328 -3.2303 39 1 1.4912 -7.7203 -3.2431 40 1 2.4697 -6.4541 -2.4630 41 1 0.9176 -8.6487 -1.0170 42 1 0.4281 -6.9423 -1.1427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338741342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:50 Heat of formation + Delta-G solvation = -104.967397 kcal Electronic energy + Delta-G solvation = -22057.749479 eV Core-core repulsion = 18843.756682 eV Total energy + Delta-G solvation = -3213.992797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44920 -37.86106 -36.64475 -34.21782 -33.62264 -32.41535 -31.09395 -30.76566 -28.03236 -26.84803 -23.54811 -22.88902 -22.38572 -20.69919 -20.32955 -18.96184 -18.00124 -17.33920 -16.25249 -15.62109 -15.24474 -15.01004 -14.58208 -14.52467 -14.15625 -13.85915 -13.77592 -13.56108 -13.01273 -12.39133 -12.26232 -12.18398 -12.05875 -11.92047 -11.74467 -11.40629 -11.16321 -10.96551 -10.92700 -10.85000 -10.56872 -10.29716 -10.22505 -10.09266 -9.74013 -9.34042 -9.03708 -8.69300 -8.57181 -7.70332 -6.12901 -4.19302 3.25763 3.30851 3.33506 3.43574 4.01527 4.27998 4.34706 4.61781 4.72633 4.78163 5.06777 5.17315 5.23131 5.24886 5.28284 5.39169 5.47069 5.51268 5.53352 5.60436 5.67599 5.75736 5.92851 6.00612 6.06551 6.11917 6.20698 6.27121 6.44423 6.57234 6.59472 7.05859 7.18905 7.56806 7.61276 7.62115 7.73817 7.95843 8.09359 8.80594 9.01219 9.39642 9.54357 10.97302 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.004818 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.974445 B = 5810.469200 C = 6462.166928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.269 3.731 10 N -0.732 5.732 11 C 0.695 3.305 12 O -0.593 6.593 13 N -0.749 5.749 14 C 0.209 3.791 15 C -0.132 4.132 16 C 0.081 3.919 17 O -0.574 6.574 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.130 4.130 23 H 0.265 0.735 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.384 0.616 27 H 0.388 0.612 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.375 0.625 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 -17.240 0.183 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.384 5.384 11 C 0.395 3.605 12 O -0.472 6.472 13 N -0.407 5.407 14 C 0.121 3.879 15 C -0.171 4.171 16 C 0.004 3.996 17 O -0.379 6.379 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.168 4.168 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.216 0.784 27 H 0.222 0.778 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.221 0.779 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.112 -17.480 -0.230 19.272 hybrid contribution 1.814 1.346 0.333 2.283 sum 9.926 -16.134 0.104 18.943 Atomic orbital electron populations 1.69982 1.06072 1.27198 1.49008 1.24937 0.94888 0.99342 0.94826 0.86434 0.79595 0.82796 0.78164 1.20514 1.21028 1.19835 1.21229 0.93197 0.90533 1.53006 0.92074 1.18933 0.87750 0.81075 0.97492 1.45747 1.10596 1.04609 1.77458 1.16122 0.85315 0.80869 0.78179 1.90812 1.14246 1.83917 1.58206 1.45353 1.08856 1.04905 1.81550 1.19890 0.93167 0.80645 0.94163 1.21934 1.01122 1.02180 0.91841 1.22159 0.92462 0.99688 0.85304 1.86488 1.42207 1.90755 1.18458 1.21887 0.96470 0.99613 0.98134 1.21526 0.97813 1.01676 0.94612 1.21547 0.96976 0.99450 0.97596 1.21455 0.96386 0.99911 0.97502 1.21962 0.99620 1.01824 0.93386 0.92501 0.95873 0.95835 0.78433 0.77797 0.88270 0.91404 0.94518 0.93341 0.77936 0.91433 0.90520 0.92049 0.91869 0.92244 0.92360 0.92388 0.91685 0.92020 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.21 5.43 -5.20 -0.03 7.18 16 10 N -0.73 -15.48 5.55 -66.42 -0.37 -15.85 16 11 C 0.70 13.81 7.56 -86.92 -0.66 13.15 16 12 O -0.59 -14.13 12.64 5.29 0.07 -14.06 16 13 N -0.75 -10.70 3.13 -52.41 -0.16 -10.86 16 14 C 0.21 2.67 0.35 -131.82 -0.05 2.62 16 15 C -0.13 -1.93 4.27 -26.73 -0.11 -2.05 16 16 C 0.08 1.11 6.54 37.16 0.24 1.35 16 17 O -0.57 -8.33 13.66 -35.23 -0.48 -8.81 16 18 C -0.12 -1.16 4.56 -26.74 -0.12 -1.28 16 19 C -0.12 -1.03 5.75 -26.74 -0.15 -1.18 16 20 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 21 C -0.11 -1.39 5.77 -26.73 -0.15 -1.55 16 22 C -0.13 -1.76 4.57 -26.73 -0.12 -1.88 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.38 6.99 8.34 -40.82 -0.34 6.65 16 27 H 0.39 4.58 7.23 -40.82 -0.29 4.29 16 28 H 0.10 1.89 6.28 -51.93 -0.33 1.56 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.40 6.83 -51.93 -0.35 0.05 16 31 H 0.05 0.73 6.96 -51.93 -0.36 0.37 16 32 H 0.37 3.64 9.12 45.56 0.42 4.05 16 33 H 0.07 0.58 6.69 -51.93 -0.35 0.24 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.57 6.79 -51.93 -0.35 0.21 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.59 6.24 -51.93 -0.32 1.27 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -33.07 325.84 -8.07 -41.14 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.02 Total: 11.51 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.73 Total: 1.68 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.20 Total: -52.31 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.41 Total: -22.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.07 -8.07 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338741342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.827 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds