Wall clock time and date at job start Mon Mar 30 2020 04:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47226 * 2 1 4 4 N 1.46496 * 109.47431 * 119.99948 * 2 1 3 5 5 C 1.34774 * 120.00580 * 275.00489 * 4 2 1 6 6 O 1.21449 * 119.99540 * 359.97438 * 5 4 2 7 7 C 1.48826 * 120.00519 * 179.97438 * 5 4 2 8 8 O 1.21499 * 120.00187 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99940 * 179.97438 * 7 5 4 10 10 C 1.36125 * 120.00041 * 180.02562 * 9 7 5 11 11 H 1.08000 * 119.99372 * 0.02562 * 10 9 7 12 12 C 1.39582 * 120.00268 * 180.02562 * 10 9 7 13 13 N 1.31019 * 119.99752 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00002 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.47025 * 300.00003 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00357 * 14 12 10 18 18 C 1.53005 * 109.47167 * 240.00240 * 2 1 3 19 19 H 1.09006 * 109.51888 * 184.99944 * 18 2 1 20 20 C 1.53172 * 109.52212 * 64.87229 * 18 2 1 21 21 C 1.53186 * 109.03181 * 183.17385 * 20 18 2 22 22 C 1.53092 * 109.21217 * 56.88949 * 21 20 18 23 23 O 1.42908 * 109.41090 * 302.42273 * 22 21 20 24 24 C 1.42896 * 114.09719 * 61.16335 * 23 22 21 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47154 * 299.99654 * 1 2 3 27 27 H 1.09002 * 109.47184 * 59.99994 * 1 2 3 28 28 H 0.97005 * 119.99809 * 95.00111 * 4 2 1 29 29 H 0.96996 * 119.99887 * 0.02562 * 9 7 5 30 30 H 0.97001 * 119.99874 * 359.97438 * 13 12 10 31 31 H 1.08993 * 109.54629 * 302.98424 * 20 18 2 32 32 H 1.09002 * 109.54654 * 63.24667 * 20 18 2 33 33 H 1.09001 * 109.47284 * 296.98274 * 21 20 18 34 34 H 1.09006 * 109.57568 * 176.85469 * 21 20 18 35 35 H 1.08994 * 109.48161 * 182.44214 * 22 21 20 36 36 H 1.08999 * 109.49197 * 62.41222 * 22 21 20 37 37 H 1.09001 * 109.48051 * 178.85799 * 24 23 22 38 38 H 1.08996 * 109.48598 * 58.81955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8586 1.1601 2.4116 7 6 2.6427 -0.7201 3.5724 8 8 2.9318 -1.8989 3.5178 9 7 2.7719 -0.0476 4.7333 10 6 3.2257 -0.6892 5.8447 11 1 3.4826 -1.7371 5.7961 12 6 3.3590 0.0070 7.0471 13 7 3.0468 1.2781 7.1061 14 14 3.9810 -0.8738 8.5724 15 1 4.0305 0.0803 9.7094 16 1 3.0644 -1.9934 8.9059 17 1 5.3423 -1.4084 8.3148 18 6 2.0400 -0.7212 -1.2493 19 1 3.1264 -0.7999 -1.2064 20 6 1.6327 0.0673 -2.4977 21 6 2.0791 -0.7042 -3.7435 22 6 1.4654 -2.1064 -3.7146 23 8 1.8600 -2.7728 -2.5136 24 6 1.4279 -2.1228 -1.3167 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 2.5414 0.8936 4.7767 30 1 2.7234 1.7353 6.3141 31 1 0.5498 0.1899 -2.5143 32 1 2.1115 1.0464 -2.4830 33 1 3.1663 -0.7824 -3.7523 34 1 1.7445 -0.1785 -4.6380 35 1 1.8149 -2.6740 -4.5769 36 1 0.3787 -2.0285 -3.7469 37 1 1.7504 -2.7022 -0.4516 38 1 0.3407 -2.0449 -1.3174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389152554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:29 Heat of formation + Delta-G solvation = -133.159836 kcal Electronic energy + Delta-G solvation = -21002.810557 eV Core-core repulsion = 17651.762149 eV Total energy + Delta-G solvation = -3351.048408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29430 -39.28428 -37.50155 -35.97794 -34.65118 -33.42912 -31.60025 -31.14811 -29.01634 -25.85972 -25.34549 -24.78354 -23.17518 -21.42393 -19.75198 -19.65152 -18.27327 -17.65689 -16.52086 -16.27241 -15.92833 -15.25840 -15.09192 -14.80726 -14.68397 -14.49489 -13.85029 -13.80236 -13.41860 -13.08210 -12.90015 -12.70850 -12.48685 -12.19769 -11.51467 -11.41427 -11.28020 -11.16372 -11.08956 -10.83269 -10.54473 -10.47289 -10.29115 -10.07382 -9.75932 -9.60710 -8.89285 -8.35684 -8.30231 -7.03837 -4.07377 2.33491 3.20774 3.29032 3.30009 3.47394 3.63990 4.14123 4.20944 4.44637 4.51551 4.56669 4.65641 4.80853 4.92816 5.00741 5.13306 5.17038 5.21264 5.28551 5.33880 5.48075 5.57588 5.63145 5.69638 5.74135 5.76329 5.84518 5.96517 6.04336 6.26221 6.69999 6.97335 7.47379 7.70469 7.84754 8.23496 8.42189 8.67504 9.21380 9.65458 10.38099 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043691 B = 0.003614 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.712698 B = 7745.195223 C = 8129.348156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.711 5.711 5 C 0.515 3.485 6 O -0.549 6.549 7 C 0.394 3.606 8 O -0.591 6.591 9 N -0.512 5.512 10 C -0.384 4.384 11 H 0.109 0.891 12 C 0.000 4.000 13 N -0.867 5.867 14 Si 1.096 2.904 15 H -0.276 1.276 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.130 4.130 19 H 0.088 0.912 20 C -0.116 4.116 21 C -0.155 4.155 22 C 0.058 3.942 23 O -0.380 6.380 24 C 0.060 3.940 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.409 0.591 29 H 0.388 0.612 30 H 0.271 0.729 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -2.476 -18.550 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.044 3.956 3 H 0.109 0.891 4 N -0.365 5.365 5 C 0.300 3.700 6 O -0.427 6.427 7 C 0.179 3.821 8 O -0.479 6.479 9 N -0.147 5.147 10 C -0.514 4.514 11 H 0.127 0.873 12 C -0.208 4.208 13 N -0.503 5.503 14 Si 0.920 3.080 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.150 4.150 19 H 0.106 0.894 20 C -0.154 4.154 21 C -0.193 4.193 22 C -0.018 4.018 23 O -0.299 6.299 24 C -0.017 4.017 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.245 0.755 29 H 0.223 0.777 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.826 -2.336 -16.931 17.515 hybrid contribution -0.579 0.272 -1.764 1.876 sum -4.405 -2.064 -18.695 19.317 Atomic orbital electron populations 1.22325 0.95394 1.02353 1.02682 1.20865 0.94157 0.97478 0.83104 0.89134 1.45781 1.67168 1.14772 1.08744 1.20658 0.77618 0.86650 0.85059 1.90675 1.50393 1.16131 1.85464 1.18877 0.90892 0.88010 0.84292 1.90588 1.57326 1.15432 1.84559 1.41597 1.52639 1.12258 1.08223 1.20761 1.43541 0.98892 0.88229 0.87306 1.26939 0.96024 0.95935 1.01877 1.70700 1.37428 1.09518 1.32695 0.83088 0.76719 0.74795 0.73392 1.20063 1.20505 1.20494 1.22068 1.02185 0.96191 0.94531 0.89412 1.21649 1.01710 0.98899 0.93139 1.22191 1.02046 0.96664 0.98415 1.22583 0.98387 0.93009 0.87867 1.87962 1.78290 1.49935 1.13699 1.22786 0.98556 0.92554 0.87758 0.92087 0.91661 0.91568 0.75500 0.77724 0.91735 0.91128 0.91004 0.90955 0.90793 0.89017 0.93249 0.88620 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 8.75 37.16 0.33 -1.68 16 2 C 0.15 1.96 2.36 -67.93 -0.16 1.80 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.71 -11.83 5.00 -54.43 -0.27 -12.11 16 5 C 0.52 10.99 7.83 -11.88 -0.09 10.90 16 6 O -0.55 -12.46 16.13 5.41 0.09 -12.37 16 7 C 0.39 9.92 7.82 -11.88 -0.09 9.83 16 8 O -0.59 -15.93 16.03 5.37 0.09 -15.85 16 9 N -0.51 -13.58 5.24 -11.59 -0.06 -13.64 16 10 C -0.38 -10.68 9.67 -15.15 -0.15 -10.82 16 11 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 12 C 0.00 -0.01 5.51 -17.40 -0.10 -0.11 16 13 N -0.87 -23.97 13.66 55.53 0.76 -23.21 16 14 Si 1.10 23.15 29.93 -169.99 -5.09 18.06 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 18 C -0.13 -1.40 2.32 -90.48 -0.21 -1.61 16 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.12 -0.99 5.13 -26.55 -0.14 -1.13 16 21 C -0.16 -1.19 6.13 -26.59 -0.16 -1.35 16 22 C 0.06 0.49 6.84 37.21 0.25 0.74 16 23 O -0.38 -4.36 10.77 -35.23 -0.38 -4.73 16 24 C 0.06 0.65 5.56 37.21 0.21 0.85 16 25 H 0.06 0.67 6.29 -51.93 -0.33 0.34 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.63 6.50 -51.93 -0.34 0.29 16 28 H 0.41 6.54 6.68 -40.82 -0.27 6.27 16 29 H 0.39 10.04 6.18 -40.82 -0.25 9.79 16 30 H 0.27 7.40 6.78 -40.82 -0.28 7.12 16 31 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 1.08 6.86 -51.93 -0.36 0.73 16 38 H 0.06 0.58 6.21 -51.93 -0.32 0.26 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -31.80 309.68 -5.51 -37.31 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.00 Total: 14.45 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.31 Total: 7.42 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.43 Total: -48.96 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.21 Total: -32.95 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.09 Total: 18.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.80 -5.51 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389152554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.847 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds