Wall clock time and date at job start Mon Mar 30 2020 04:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47226 * 2 1 4 4 N 1.46496 * 109.47431 * 119.99948 * 2 1 3 5 5 C 1.34774 * 120.00580 * 275.00489 * 4 2 1 6 6 O 1.21449 * 119.99540 * 359.97438 * 5 4 2 7 7 C 1.48826 * 120.00519 * 179.97438 * 5 4 2 8 8 O 1.21499 * 120.00187 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99940 * 179.97438 * 7 5 4 10 10 C 1.36125 * 120.00041 * 180.02562 * 9 7 5 11 11 H 1.08000 * 119.99372 * 0.02562 * 10 9 7 12 12 C 1.39582 * 120.00268 * 180.02562 * 10 9 7 13 13 N 1.31019 * 119.99752 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00002 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.47025 * 300.00003 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00357 * 14 12 10 18 18 C 1.53005 * 109.47167 * 240.00240 * 2 1 3 19 19 H 1.09006 * 109.51888 * 184.99944 * 18 2 1 20 20 C 1.53172 * 109.52212 * 64.87229 * 18 2 1 21 21 C 1.53186 * 109.03181 * 183.17385 * 20 18 2 22 22 C 1.53092 * 109.21217 * 56.88949 * 21 20 18 23 23 O 1.42908 * 109.41090 * 302.42273 * 22 21 20 24 24 C 1.42896 * 114.09719 * 61.16335 * 23 22 21 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47154 * 299.99654 * 1 2 3 27 27 H 1.09002 * 109.47184 * 59.99994 * 1 2 3 28 28 H 0.97005 * 119.99809 * 95.00111 * 4 2 1 29 29 H 0.96996 * 119.99887 * 0.02562 * 9 7 5 30 30 H 0.97001 * 119.99874 * 359.97438 * 13 12 10 31 31 H 1.08993 * 109.54629 * 302.98424 * 20 18 2 32 32 H 1.09002 * 109.54654 * 63.24667 * 20 18 2 33 33 H 1.09001 * 109.47284 * 296.98274 * 21 20 18 34 34 H 1.09006 * 109.57568 * 176.85469 * 21 20 18 35 35 H 1.08994 * 109.48161 * 182.44214 * 22 21 20 36 36 H 1.08999 * 109.49197 * 62.41222 * 22 21 20 37 37 H 1.09001 * 109.48051 * 178.85799 * 24 23 22 38 38 H 1.08996 * 109.48598 * 58.81955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8586 1.1601 2.4116 7 6 2.6427 -0.7201 3.5724 8 8 2.9318 -1.8989 3.5178 9 7 2.7719 -0.0476 4.7333 10 6 3.2257 -0.6892 5.8447 11 1 3.4826 -1.7371 5.7961 12 6 3.3590 0.0070 7.0471 13 7 3.0468 1.2781 7.1061 14 14 3.9810 -0.8738 8.5724 15 1 4.0305 0.0803 9.7094 16 1 3.0644 -1.9934 8.9059 17 1 5.3423 -1.4084 8.3148 18 6 2.0400 -0.7212 -1.2493 19 1 3.1264 -0.7999 -1.2064 20 6 1.6327 0.0673 -2.4977 21 6 2.0791 -0.7042 -3.7435 22 6 1.4654 -2.1064 -3.7146 23 8 1.8600 -2.7728 -2.5136 24 6 1.4279 -2.1228 -1.3167 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 2.5414 0.8936 4.7767 30 1 2.7234 1.7353 6.3141 31 1 0.5498 0.1899 -2.5143 32 1 2.1115 1.0464 -2.4830 33 1 3.1663 -0.7824 -3.7523 34 1 1.7445 -0.1785 -4.6380 35 1 1.8149 -2.6740 -4.5769 36 1 0.3787 -2.0285 -3.7469 37 1 1.7504 -2.7022 -0.4516 38 1 0.3407 -2.0449 -1.3174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389152554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:29 Heat of formation + Delta-G solvation = -157.184482 kcal Electronic energy + Delta-G solvation = -21003.852344 eV Core-core repulsion = 17651.762149 eV Total energy + Delta-G solvation = -3352.090194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67906 -40.58093 -39.29910 -37.29568 -36.63470 -34.42676 -33.32459 -32.55088 -29.98219 -27.73018 -26.13784 -25.99817 -24.67805 -22.51538 -21.40535 -20.65596 -20.28634 -19.38439 -17.82469 -17.26434 -17.11453 -16.67893 -16.61514 -16.49137 -15.80210 -15.55825 -15.47451 -15.06267 -14.90986 -14.55205 -13.92011 -13.63548 -13.55564 -13.51338 -13.09362 -12.89015 -12.50349 -12.39101 -12.14876 -12.04246 -11.89412 -11.86906 -11.67994 -11.63406 -11.23547 -10.41710 -10.37598 -10.34792 -10.28180 -9.16658 -6.24802 0.48558 1.52862 1.62221 1.68319 1.85776 2.30510 2.40333 2.88077 3.07482 3.07830 3.60120 3.65138 3.76011 3.79106 4.00817 4.14324 4.18565 4.22671 4.41061 4.49820 4.58283 4.72884 4.81058 4.84171 4.90182 4.92197 5.06789 5.16428 5.22433 5.30244 5.36849 5.40088 5.69817 6.01336 6.24058 6.29229 6.43681 6.87228 7.15075 7.58274 8.27356 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.043691 B = 0.003614 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.712698 B = 7745.195223 C = 8129.348156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.081 0.919 4 N -0.690 5.690 5 C 0.522 3.478 6 O -0.564 6.564 7 C 0.393 3.607 8 O -0.610 6.610 9 N -0.525 5.525 10 C -0.417 4.417 11 H 0.094 0.906 12 C -0.031 4.031 13 N -0.885 5.885 14 Si 1.142 2.858 15 H -0.270 1.270 16 H -0.265 1.265 17 H -0.265 1.265 18 C -0.121 4.121 19 H 0.075 0.925 20 C -0.115 4.115 21 C -0.151 4.151 22 C 0.050 3.950 23 O -0.402 6.402 24 C 0.060 3.940 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.413 0.587 29 H 0.389 0.611 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -2.788 -20.172 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.099 0.901 4 N -0.343 5.343 5 C 0.305 3.695 6 O -0.443 6.443 7 C 0.178 3.822 8 O -0.499 6.499 9 N -0.161 5.161 10 C -0.547 4.547 11 H 0.112 0.888 12 C -0.233 4.233 13 N -0.521 5.521 14 Si 0.959 3.041 15 H -0.195 1.195 16 H -0.189 1.189 17 H -0.190 1.190 18 C -0.140 4.140 19 H 0.093 0.907 20 C -0.152 4.152 21 C -0.189 4.189 22 C -0.026 4.026 23 O -0.321 6.321 24 C -0.017 4.017 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.250 0.750 29 H 0.223 0.777 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.450 -2.655 -18.613 19.321 hybrid contribution -0.420 0.331 -1.466 1.560 sum -4.870 -2.324 -20.079 20.792 Atomic orbital electron populations 1.22300 0.93761 1.03200 1.03011 1.21166 0.95381 0.96896 0.82331 0.90115 1.45820 1.65215 1.14884 1.08383 1.19966 0.78074 0.86323 0.85169 1.90674 1.51430 1.16499 1.85698 1.19657 0.89392 0.87927 0.85183 1.90559 1.57655 1.16440 1.85252 1.41675 1.53433 1.12352 1.08647 1.20844 1.45658 0.98659 0.89496 0.88780 1.28435 0.94866 0.95785 1.04261 1.70798 1.38703 1.10254 1.32371 0.82582 0.77174 0.74311 0.70073 1.19492 1.18941 1.18974 1.21983 1.01333 0.96482 0.94241 0.90691 1.21684 1.02678 0.98733 0.92149 1.22173 1.01502 0.96373 0.98809 1.22832 0.99389 0.93372 0.87011 1.87938 1.78787 1.50798 1.14617 1.22758 0.99249 0.92066 0.87591 0.90984 0.94161 0.88409 0.74976 0.77663 0.92679 0.89657 0.90634 0.91857 0.88456 0.87739 0.91869 0.89861 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.75 71.98 0.63 -2.92 16 2 C 0.15 3.63 2.36 44.99 0.11 3.74 16 3 H 0.08 2.24 7.58 -2.38 -0.02 2.22 16 4 N -0.69 -22.66 5.00 -444.45 -2.22 -24.88 16 5 C 0.52 22.37 7.83 87.08 0.68 23.05 16 6 O -0.56 -25.73 16.13 -3.56 -0.06 -25.78 16 7 C 0.39 20.16 7.82 87.08 0.68 20.84 16 8 O -0.61 -33.40 16.03 -3.71 -0.06 -33.46 16 9 N -0.53 -28.66 5.24 -308.88 -1.62 -30.28 16 10 C -0.42 -23.73 9.67 84.35 0.82 -22.91 16 11 H 0.09 5.53 7.15 -2.91 -0.02 5.51 16 12 C -0.03 -1.67 5.51 85.14 0.47 -1.20 16 13 N -0.89 -49.55 13.66 21.76 0.30 -49.26 16 14 Si 1.14 46.18 29.93 68.60 2.05 48.23 16 15 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 C -0.12 -2.38 2.32 -10.70 -0.02 -2.41 16 19 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 20 C -0.11 -1.63 5.13 30.71 0.16 -1.47 16 21 C -0.15 -1.86 6.13 30.69 0.19 -1.67 16 22 C 0.05 0.69 6.84 72.01 0.49 1.18 16 23 O -0.40 -8.47 10.77 -148.98 -1.60 -10.08 16 24 C 0.06 1.18 5.56 72.01 0.40 1.59 16 25 H 0.07 1.40 6.29 -2.39 -0.02 1.38 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.50 6.50 -2.39 -0.02 1.49 16 28 H 0.41 13.05 6.68 -92.70 -0.62 12.43 16 29 H 0.39 20.80 6.18 -92.71 -0.57 20.23 16 30 H 0.26 14.71 6.78 -92.71 -0.63 14.08 16 31 H 0.08 0.98 6.44 -2.39 -0.02 0.97 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.81 6.86 -2.39 -0.02 1.80 16 38 H 0.07 1.23 6.21 -2.39 -0.01 1.21 16 Total: -1.00 -69.13 309.68 1.43 -67.70 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: 0.05 Total: 39.98 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 4.60 Total: 17.82 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -3.55 Total: -104.42 kcal Atomic # 8 Polarization: -67.59 SS G_CDS: -1.72 Total: -69.32 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.05 Total: 48.23 kcal Total: -69.13 1.43 -67.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389152554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.483 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds