Wall clock time and date at job start Mon Mar 30 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00085 * 2 1 4 4 C 1.53006 * 109.47040 * 180.02562 * 3 2 1 5 5 O 1.42893 * 109.47014 * 65.00345 * 4 3 2 6 6 C 1.42904 * 113.99964 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47087 * 179.97438 * 6 5 4 8 8 N 1.29956 * 126.28956 * 89.97491 * 7 6 5 9 9 O 1.21297 * 110.25152 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81173 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55058 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47004 * 300.02436 * 11 10 9 14 14 C 1.52996 * 109.47310 * 60.02217 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 N 1.31128 * 106.90006 * 0.22611 * 10 9 8 24 24 H 1.08994 * 109.46808 * 300.00028 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00159 * 1 2 3 26 26 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 60.00119 * 3 2 1 28 28 H 1.09002 * 109.47203 * 300.00060 * 3 2 1 29 29 H 1.09002 * 109.47244 * 304.99994 * 4 3 2 30 30 H 1.09004 * 109.46840 * 185.00163 * 4 3 2 31 31 H 1.08993 * 109.47228 * 59.99817 * 6 5 4 32 32 H 1.09001 * 109.46621 * 299.99693 * 6 5 4 33 33 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 34 34 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 35 35 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 36 36 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 37 37 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3811 0.4190 -1.3246 7 6 5.7193 -0.2253 -2.6442 8 7 5.9666 0.3922 -3.7607 9 8 6.2048 -0.4090 -4.6397 10 6 6.1303 -1.6513 -4.1527 11 6 6.3567 -2.9300 -4.9172 12 1 6.2251 -3.7811 -4.2491 13 6 5.3498 -3.0227 -6.0656 14 6 7.7781 -2.9410 -5.4832 15 6 8.0461 -4.2696 -6.1421 16 1 7.2792 -5.0299 -6.1562 17 6 9.2683 -4.5122 -6.7325 18 7 10.2021 -3.5862 -6.7157 19 14 9.5978 -6.1562 -7.5560 20 1 8.6211 -6.3639 -8.6551 21 1 10.9758 -6.1651 -8.1095 22 1 9.4589 -7.2467 -6.5576 23 7 5.8172 -1.5451 -2.8838 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0890 31 1 5.7350 -0.2135 -0.5106 32 1 5.8628 1.3949 -1.2623 33 1 4.3371 -3.0149 -5.6624 34 1 5.4815 -2.1717 -6.7338 35 1 5.5133 -3.9479 -6.6183 36 1 8.4924 -2.7859 -4.6746 37 1 7.8826 -2.1432 -6.2184 38 1 11.0620 -3.7570 -7.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395443777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:29 Heat of formation + Delta-G solvation = -35.141749 kcal Electronic energy + Delta-G solvation = -20158.591662 eV Core-core repulsion = 16811.793638 eV Total energy + Delta-G solvation = -3346.798024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.13772 -38.74653 -37.50561 -35.87327 -35.12530 -32.62235 -31.28704 -30.46157 -27.52592 -27.10983 -26.43300 -24.60701 -23.11781 -22.85446 -22.15902 -19.62870 -17.79672 -17.14366 -17.05712 -16.80594 -16.49845 -15.79835 -15.59033 -15.39799 -14.60903 -14.46213 -14.37585 -13.40399 -13.00952 -12.64153 -12.60743 -12.37394 -12.06176 -11.91281 -11.75061 -11.47182 -11.35960 -11.09349 -10.97079 -10.88617 -10.60489 -10.53636 -10.15403 -9.99706 -9.91992 -9.88242 -9.25390 -9.19359 -8.42856 -6.07095 -4.10960 1.56174 2.43783 3.31456 3.33764 3.36606 3.38095 3.45964 3.49519 4.12057 4.32010 4.42941 4.68789 4.85505 4.95850 5.04845 5.05439 5.12452 5.13566 5.21575 5.29309 5.40537 5.42574 5.59182 5.78063 5.86981 5.99296 6.27675 6.34840 6.59172 6.70100 6.79586 6.85637 6.92708 7.49594 7.58128 7.88343 8.24663 8.57730 8.93145 9.53317 11.04237 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035040 B = 0.003149 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.891059 B = 8890.617308 C = 9302.040445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.373 6.373 6 C 0.162 3.838 7 C 0.160 3.840 8 N -0.381 5.381 9 O 0.082 5.918 10 C 0.220 3.780 11 C -0.001 4.001 12 H 0.107 0.893 13 C -0.135 4.135 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.276 1.276 23 N -0.489 5.489 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.022 0.978 37 H 0.029 0.971 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 9.409 12.366 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.291 6.291 6 C 0.084 3.916 7 C -0.113 4.113 8 N -0.091 5.091 9 O 0.023 5.977 10 C 0.001 3.999 11 C -0.022 4.022 12 H 0.125 0.875 13 C -0.193 4.193 14 C -0.009 4.009 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.223 5.223 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.767 9.972 12.544 21.791 hybrid contribution 0.321 -0.556 -0.301 0.709 sum -14.446 9.416 12.243 21.148 Atomic orbital electron populations 1.22752 0.81056 1.02979 0.99758 1.88000 1.19606 1.27105 1.95341 1.22554 0.92216 0.85689 1.00908 1.22557 0.93578 0.97650 0.87473 1.88010 1.20590 1.82261 1.38254 1.20265 0.82719 0.98886 0.89693 1.25168 1.02387 0.87388 0.96372 1.74562 1.19168 1.16834 0.98551 1.85282 1.63392 1.14998 1.34061 1.29629 0.91405 0.89977 0.88860 1.20374 1.01336 0.85052 0.95420 0.87532 1.21787 0.96024 1.04191 0.97347 1.19245 0.86597 0.98705 0.96365 1.21028 0.99263 0.99328 1.36333 0.91966 1.25003 0.96131 0.96948 0.96146 1.69958 1.05171 1.33534 1.44371 0.86598 0.77339 0.83944 0.79787 1.20082 1.21320 1.20136 1.71916 1.20772 1.16145 1.13463 0.94228 0.94028 0.89483 0.91633 0.92347 0.91895 0.91414 0.89923 0.90609 0.93998 0.92303 0.89626 0.95963 0.95223 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.53 10.67 -40.09 -0.43 -4.96 16 3 C 0.06 0.58 6.32 37.16 0.23 0.81 16 4 C 0.06 0.62 6.32 37.16 0.23 0.86 16 5 O -0.37 -5.36 10.29 -40.09 -0.41 -5.78 16 6 C 0.16 2.25 6.56 36.00 0.24 2.49 16 7 C 0.16 2.95 7.85 -156.36 -1.23 1.72 16 8 N -0.38 -7.46 12.16 30.90 0.38 -7.09 16 9 O 0.08 1.67 11.31 18.10 0.20 1.88 16 10 C 0.22 4.46 7.02 -13.06 -0.09 4.37 16 11 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 12 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 13 C -0.14 -2.39 8.99 37.16 0.33 -2.06 16 14 C 0.03 0.71 4.43 -27.88 -0.12 0.58 16 15 C -0.52 -13.73 8.41 -34.44 -0.29 -14.02 16 16 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 19 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 N -0.49 -9.85 11.55 -9.86 -0.11 -9.96 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -32.14 331.59 -5.38 -37.52 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -5.78 Total: -4.55 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.07 Total: -2.63 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 1.00 Total: -42.27 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.64 Total: -8.86 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.14 -5.38 -37.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395443777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.379 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds