Wall clock time and date at job start Mon Mar 30 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00085 * 2 1 4 4 C 1.53006 * 109.47040 * 180.02562 * 3 2 1 5 5 O 1.42893 * 109.47014 * 65.00345 * 4 3 2 6 6 C 1.42904 * 113.99964 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47087 * 179.97438 * 6 5 4 8 8 N 1.29956 * 126.28956 * 89.97491 * 7 6 5 9 9 O 1.21297 * 110.25152 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81173 * 359.97438 * 9 8 7 11 11 C 1.50695 * 126.55058 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47004 * 300.02436 * 11 10 9 14 14 C 1.52996 * 109.47310 * 60.02217 * 11 10 9 15 15 C 1.50702 * 109.47159 * 174.99934 * 14 11 10 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 N 1.31128 * 106.90006 * 0.22611 * 10 9 8 24 24 H 1.08994 * 109.46808 * 300.00028 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00159 * 1 2 3 26 26 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 60.00119 * 3 2 1 28 28 H 1.09002 * 109.47203 * 300.00060 * 3 2 1 29 29 H 1.09002 * 109.47244 * 304.99994 * 4 3 2 30 30 H 1.09004 * 109.46840 * 185.00163 * 4 3 2 31 31 H 1.08993 * 109.47228 * 59.99817 * 6 5 4 32 32 H 1.09001 * 109.46621 * 299.99693 * 6 5 4 33 33 H 1.09001 * 109.46930 * 299.99977 * 13 11 10 34 34 H 1.08999 * 109.46998 * 60.00229 * 13 11 10 35 35 H 1.09004 * 109.46896 * 180.02562 * 13 11 10 36 36 H 1.09004 * 109.47066 * 55.00137 * 14 11 10 37 37 H 1.08994 * 109.47405 * 294.99967 * 14 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3811 0.4190 -1.3246 7 6 5.7193 -0.2253 -2.6442 8 7 5.9666 0.3922 -3.7607 9 8 6.2048 -0.4090 -4.6397 10 6 6.1303 -1.6513 -4.1527 11 6 6.3567 -2.9300 -4.9172 12 1 6.2251 -3.7811 -4.2491 13 6 5.3498 -3.0227 -6.0656 14 6 7.7781 -2.9410 -5.4832 15 6 8.0461 -4.2696 -6.1421 16 1 7.2792 -5.0299 -6.1562 17 6 9.2683 -4.5122 -6.7325 18 7 10.2021 -3.5862 -6.7157 19 14 9.5978 -6.1562 -7.5560 20 1 8.6211 -6.3639 -8.6551 21 1 10.9758 -6.1651 -8.1095 22 1 9.4589 -7.2467 -6.5576 23 7 5.8172 -1.5451 -2.8838 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0890 31 1 5.7350 -0.2135 -0.5106 32 1 5.8628 1.3949 -1.2623 33 1 4.3371 -3.0149 -5.6624 34 1 5.4815 -2.1717 -6.7338 35 1 5.5133 -3.9479 -6.6183 36 1 8.4924 -2.7859 -4.6746 37 1 7.8826 -2.1432 -6.2184 38 1 11.0620 -3.7570 -7.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395443777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:29 Heat of formation + Delta-G solvation = -58.326397 kcal Electronic energy + Delta-G solvation = -20159.597024 eV Core-core repulsion = 16811.793638 eV Total energy + Delta-G solvation = -3347.803386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.65971 -39.60359 -38.36848 -37.55555 -36.63260 -34.54801 -32.74028 -31.42684 -29.00302 -28.61751 -27.11441 -26.30048 -24.73977 -23.82520 -23.56744 -21.20782 -19.24017 -18.64008 -18.37705 -17.98115 -17.69296 -16.81626 -16.51814 -16.47790 -16.27579 -15.95182 -15.44978 -15.00226 -14.42007 -13.96432 -13.75502 -13.68902 -13.31456 -13.14185 -12.97805 -12.82811 -12.79030 -12.60351 -12.36468 -12.28297 -12.17865 -12.09181 -11.89762 -11.63262 -11.26108 -10.87386 -10.81205 -10.65415 -10.52459 -8.16435 -6.27010 0.02580 0.99379 1.48112 1.50478 1.57755 1.79393 2.28684 2.46638 2.83842 2.85725 3.10529 3.18987 3.80180 3.99908 4.10613 4.14634 4.20482 4.28351 4.37138 4.42048 4.45299 4.51839 4.55156 4.55869 4.74075 4.75635 4.81475 4.84407 5.04242 5.07931 5.36470 5.42286 5.59061 5.81148 5.96889 6.17849 6.23968 6.86615 7.03372 7.42099 8.95970 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035040 B = 0.003149 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.891059 B = 8890.617308 C = 9302.040445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.058 3.942 4 C 0.056 3.944 5 O -0.403 6.403 6 C 0.162 3.838 7 C 0.163 3.837 8 N -0.393 5.393 9 O 0.066 5.934 10 C 0.215 3.785 11 C 0.008 3.992 12 H 0.113 0.887 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.529 4.529 16 H 0.079 0.921 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.267 1.267 23 N -0.502 5.502 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.086 0.914 36 H -0.011 1.011 37 H 0.006 0.994 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 9.126 13.241 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.020 4.020 5 O -0.322 6.322 6 C 0.084 3.916 7 C -0.111 4.111 8 N -0.106 5.106 9 O 0.010 5.990 10 C -0.005 4.005 11 C -0.012 4.012 12 H 0.131 0.869 13 C -0.187 4.187 14 C -0.001 4.001 15 C -0.567 4.567 16 H 0.097 0.903 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.192 1.192 23 N -0.237 5.237 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.008 0.992 37 H 0.025 0.975 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.156 9.685 13.409 23.121 hybrid contribution 0.695 -0.387 -0.476 0.927 sum -15.461 9.298 12.933 22.198 Atomic orbital electron populations 1.22901 0.79599 1.03582 1.00921 1.87942 1.21454 1.28872 1.95617 1.22760 0.91806 0.85000 1.02248 1.22907 0.94113 0.99071 0.85878 1.87961 1.20426 1.83144 1.40703 1.20511 0.83286 1.00229 0.87526 1.26046 1.00542 0.86848 0.97629 1.74552 1.20190 1.16862 0.98950 1.85263 1.63938 1.15098 1.34687 1.29587 0.91708 0.90008 0.89156 1.20185 0.99222 0.85470 0.96316 0.86868 1.21745 0.96480 1.04144 0.96336 1.19035 0.88791 0.97563 0.94707 1.21477 0.99597 1.00073 1.35585 0.90343 1.25950 0.96049 1.00698 0.96965 1.70109 1.05715 1.35900 1.45793 0.85484 0.77102 0.79337 0.79041 1.18686 1.21625 1.19158 1.71930 1.21137 1.17355 1.13233 0.92078 0.93797 0.89295 0.88339 0.92805 0.91188 0.88378 0.88370 0.87893 0.91567 0.92489 0.89480 0.99223 0.97532 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.44 10.67 -144.34 -1.54 -10.98 16 3 C 0.06 0.94 6.32 71.98 0.45 1.40 16 4 C 0.06 0.95 6.32 71.98 0.45 1.41 16 5 O -0.40 -10.97 10.29 -144.34 -1.49 -12.45 16 6 C 0.16 4.21 6.56 71.23 0.47 4.68 16 7 C 0.16 5.89 7.85 138.46 1.09 6.98 16 8 N -0.39 -15.33 12.16 -60.29 -0.73 -16.07 16 9 O 0.07 2.71 11.31 74.82 0.85 3.56 16 10 C 0.21 8.74 7.02 88.38 0.62 9.36 16 11 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 12 H 0.11 4.40 8.14 -2.39 -0.02 4.38 16 13 C -0.13 -4.43 8.99 71.98 0.65 -3.78 16 14 C 0.04 1.87 4.43 29.85 0.13 2.00 16 15 C -0.53 -27.88 8.41 25.60 0.22 -27.66 16 16 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 17 C 0.00 0.07 5.46 84.66 0.46 0.54 16 18 N -0.94 -55.59 13.29 21.45 0.28 -55.30 16 19 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 N -0.50 -20.05 11.55 -303.17 -3.50 -23.56 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.95 6.95 -2.38 -0.02 2.94 16 36 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -69.82 331.59 2.69 -67.12 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.04 Total: 6.39 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.76 Total: -3.14 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.95 Total: -94.93 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -2.18 Total: -19.88 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.82 2.69 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395443777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.795 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds