Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47149 * 2 1 4 4 C 1.42905 * 113.99868 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46903 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46799 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47042 * 179.97438 * 6 5 4 8 8 N 1.29954 * 126.28649 * 90.02411 * 7 6 5 9 9 O 1.21294 * 110.24985 * 179.73386 * 8 7 6 10 10 C 1.33643 * 109.81343 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55336 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46860 * 269.97182 * 11 10 9 13 13 H 1.09001 * 109.47134 * 55.00045 * 12 11 10 14 14 O 1.42898 * 109.47272 * 294.99809 * 12 11 10 15 15 C 1.50697 * 109.46856 * 174.99816 * 12 11 10 16 16 H 1.08002 * 120.00263 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99928 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99841 * 179.97438 * 17 15 12 19 19 Si 1.86798 * 120.00068 * 0.02562 * 17 15 12 20 20 H 1.48499 * 109.47161 * 89.99204 * 19 17 15 21 21 H 1.48496 * 109.47234 * 209.99800 * 19 17 15 22 22 H 1.48501 * 109.46827 * 329.99586 * 19 17 15 23 23 N 1.31132 * 106.89433 * 359.97438 * 10 9 8 24 24 H 1.08995 * 109.46975 * 59.99461 * 1 2 3 25 25 H 1.08991 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46632 * 299.99710 * 1 2 3 27 27 H 1.09003 * 109.46632 * 240.00290 * 2 1 3 28 28 H 1.08995 * 109.46975 * 120.00539 * 2 1 3 29 29 H 1.08999 * 109.47180 * 59.99907 * 4 3 2 30 30 H 1.09002 * 109.46757 * 300.00188 * 4 3 2 31 31 H 1.08999 * 109.47524 * 59.99817 * 5 4 3 32 32 H 1.08999 * 109.46597 * 299.99471 * 5 4 3 33 33 H 1.08999 * 109.47388 * 59.99543 * 6 5 4 34 34 H 1.09011 * 109.47111 * 299.99426 * 6 5 4 35 35 H 1.08994 * 109.47064 * 29.97104 * 11 10 9 36 36 H 1.09000 * 109.47579 * 149.97736 * 11 10 9 37 37 H 0.96694 * 114.00058 * 299.99977 * 14 12 11 38 38 H 0.96999 * 119.99769 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3507 3.0591 -0.0012 7 6 5.7393 4.5151 -0.0011 8 7 5.9390 5.2578 1.0464 9 8 6.2443 6.3829 0.7114 10 6 6.2697 6.4672 -0.6221 11 6 6.6029 7.6897 -1.4379 12 6 5.3232 8.4807 -1.7172 13 1 4.8246 8.7094 -0.7753 14 8 4.4524 7.7026 -2.5407 15 6 5.6709 9.7643 -2.4261 16 1 6.7013 9.9929 -2.6549 17 6 4.6733 10.6465 -2.7834 18 7 4.9767 11.7669 -3.4016 19 14 2.8909 10.2509 -2.3883 20 1 2.5487 10.7931 -1.0489 21 1 2.0086 10.8664 -3.4119 22 1 2.6987 8.7783 -2.3901 23 7 5.9504 5.2826 -1.0851 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 3.4231 3.4214 0.8905 32 1 3.4223 3.4223 -0.8895 33 1 5.7527 2.5761 -0.8918 34 1 5.7543 2.5749 0.8883 35 1 7.3035 8.3155 -0.8851 36 1 7.0547 7.3847 -2.3818 37 1 4.8317 7.4620 -3.3969 38 1 4.2748 12.3874 -3.6534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395458129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -45.841866 kcal Electronic energy + Delta-G solvation = -20236.343082 eV Core-core repulsion = 16889.081066 eV Total energy + Delta-G solvation = -3347.262016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.20120 -38.42190 -36.71227 -36.12884 -34.10328 -32.57134 -32.33682 -31.14814 -29.60894 -26.98610 -26.13973 -23.35777 -23.07096 -22.30587 -21.39720 -20.34998 -17.79677 -17.60158 -17.04539 -16.73821 -16.52382 -15.11638 -14.94617 -14.87296 -14.61837 -14.43227 -13.96400 -13.46754 -13.16640 -13.04748 -12.85272 -12.48088 -12.37814 -11.82901 -11.80214 -11.72330 -11.31848 -11.20799 -11.18028 -11.03724 -10.93160 -10.64107 -10.47482 -10.28865 -9.85565 -9.54016 -9.15734 -8.70838 -8.40078 -6.21215 -4.34942 1.51475 2.53644 3.23815 3.36308 3.36586 3.46545 3.72433 3.93437 4.28895 4.47808 4.71151 4.76899 4.80051 4.94538 5.02359 5.06491 5.12351 5.16712 5.21224 5.34546 5.43888 5.50627 5.59781 5.67925 5.79865 5.81488 5.91590 5.96477 6.03188 6.10292 6.32210 6.41717 6.95916 7.10633 7.41041 8.17723 8.51524 8.71562 8.92554 9.41810 10.88579 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.003912 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.893832 B = 7156.337665 C = 8270.795987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.067 3.933 5 C -0.115 4.115 6 C -0.019 4.019 7 C 0.165 3.835 8 N -0.397 5.397 9 O 0.067 5.933 10 C 0.212 3.788 11 C -0.051 4.051 12 C 0.201 3.799 13 H 0.060 0.940 14 O -0.575 6.575 15 C -0.568 4.568 16 H 0.078 0.922 17 C 0.088 3.912 18 N -0.887 5.887 19 Si 0.868 3.132 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.217 1.217 23 N -0.483 5.483 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.361 0.639 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -21.237 6.165 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.308 6.308 4 C -0.010 4.010 5 C -0.154 4.154 6 C -0.058 4.058 7 C -0.108 4.108 8 N -0.108 5.108 9 O 0.010 5.990 10 C -0.007 4.007 11 C -0.091 4.091 12 C 0.142 3.858 13 H 0.078 0.922 14 O -0.381 6.381 15 C -0.605 4.605 16 H 0.096 0.904 17 C -0.117 4.117 18 N -0.523 5.523 19 Si 0.694 3.306 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.140 1.140 23 N -0.216 5.216 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.208 0.792 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.409 -21.464 7.108 22.738 hybrid contribution -0.230 -0.006 -0.314 0.389 sum -2.640 -21.470 6.795 22.674 Atomic orbital electron populations 1.21751 0.93739 1.02161 1.03332 1.22454 0.95682 0.83829 0.99966 1.87912 1.21115 1.26377 1.95420 1.22430 0.81345 0.96931 1.00261 1.21445 0.93780 0.95507 1.04625 1.19716 0.95956 0.85758 1.04392 1.25603 1.01105 0.99832 0.84267 1.74547 1.20203 0.91809 1.24207 1.85262 1.63081 1.25080 1.25530 1.29323 0.93046 0.96921 0.81446 1.21295 1.03019 0.87429 0.97337 1.19780 0.84731 0.88754 0.92499 0.92210 1.86718 1.45392 1.74422 1.31582 1.21351 0.96198 1.02271 1.40646 0.90366 1.24941 1.00021 0.93877 0.92891 1.69933 1.34109 1.09853 1.38448 0.87063 0.83722 0.82265 0.77568 1.21234 1.22019 1.13980 1.71899 1.19581 1.01389 1.28742 0.91711 0.91149 0.91828 0.93391 0.93502 0.92956 0.93210 0.90725 0.90004 0.88632 0.89315 0.87780 0.87521 0.79246 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.55 10.34 -35.23 -0.36 -4.91 16 4 C 0.07 0.66 5.94 37.16 0.22 0.88 16 5 C -0.11 -1.37 5.57 -26.73 -0.15 -1.52 16 6 C -0.02 -0.22 5.84 -27.88 -0.16 -0.39 16 7 C 0.17 2.68 7.47 -156.38 -1.17 1.51 16 8 N -0.40 -6.97 12.16 30.90 0.38 -6.59 16 9 O 0.07 1.21 11.31 18.10 0.20 1.41 16 10 C 0.21 3.80 7.54 -13.06 -0.10 3.70 16 11 C -0.05 -0.90 5.46 -27.88 -0.15 -1.06 16 12 C 0.20 4.40 2.30 -27.88 -0.06 4.34 16 13 H 0.06 1.37 7.57 -51.93 -0.39 0.98 16 14 O -0.58 -12.65 9.90 -35.23 -0.35 -13.00 16 15 C -0.57 -14.69 9.34 -34.44 -0.32 -15.01 16 16 H 0.08 2.13 7.99 -52.49 -0.42 1.72 16 17 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 18 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 19 Si 0.87 21.35 26.99 -169.99 -4.59 16.76 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.22 -5.31 5.31 56.52 0.30 -5.01 16 23 N -0.48 -8.64 11.55 -9.87 -0.11 -8.75 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.36 7.00 9.04 45.56 0.41 7.41 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -31.66 326.34 -5.64 -37.30 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.13 Total: 3.41 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.36 Total: -5.23 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 1.04 Total: -40.66 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.51 Total: -16.50 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.66 -5.64 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395458129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.541 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds