Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47149 * 2 1 4 4 C 1.42905 * 113.99868 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46903 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46799 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47042 * 179.97438 * 6 5 4 8 8 N 1.29954 * 126.28649 * 90.02411 * 7 6 5 9 9 O 1.21294 * 110.24985 * 179.73386 * 8 7 6 10 10 C 1.33643 * 109.81343 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55336 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46860 * 269.97182 * 11 10 9 13 13 H 1.09001 * 109.47134 * 55.00045 * 12 11 10 14 14 O 1.42898 * 109.47272 * 294.99809 * 12 11 10 15 15 C 1.50697 * 109.46856 * 174.99816 * 12 11 10 16 16 H 1.08002 * 120.00263 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99928 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99841 * 179.97438 * 17 15 12 19 19 Si 1.86798 * 120.00068 * 0.02562 * 17 15 12 20 20 H 1.48499 * 109.47161 * 89.99204 * 19 17 15 21 21 H 1.48496 * 109.47234 * 209.99800 * 19 17 15 22 22 H 1.48501 * 109.46827 * 329.99586 * 19 17 15 23 23 N 1.31132 * 106.89433 * 359.97438 * 10 9 8 24 24 H 1.08995 * 109.46975 * 59.99461 * 1 2 3 25 25 H 1.08991 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46632 * 299.99710 * 1 2 3 27 27 H 1.09003 * 109.46632 * 240.00290 * 2 1 3 28 28 H 1.08995 * 109.46975 * 120.00539 * 2 1 3 29 29 H 1.08999 * 109.47180 * 59.99907 * 4 3 2 30 30 H 1.09002 * 109.46757 * 300.00188 * 4 3 2 31 31 H 1.08999 * 109.47524 * 59.99817 * 5 4 3 32 32 H 1.08999 * 109.46597 * 299.99471 * 5 4 3 33 33 H 1.08999 * 109.47388 * 59.99543 * 6 5 4 34 34 H 1.09011 * 109.47111 * 299.99426 * 6 5 4 35 35 H 1.08994 * 109.47064 * 29.97104 * 11 10 9 36 36 H 1.09000 * 109.47579 * 149.97736 * 11 10 9 37 37 H 0.96694 * 114.00058 * 299.99977 * 14 12 11 38 38 H 0.96999 * 119.99769 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3507 3.0591 -0.0012 7 6 5.7393 4.5151 -0.0011 8 7 5.9390 5.2578 1.0464 9 8 6.2443 6.3829 0.7114 10 6 6.2697 6.4672 -0.6221 11 6 6.6029 7.6897 -1.4379 12 6 5.3232 8.4807 -1.7172 13 1 4.8246 8.7094 -0.7753 14 8 4.4524 7.7026 -2.5407 15 6 5.6709 9.7643 -2.4261 16 1 6.7013 9.9929 -2.6549 17 6 4.6733 10.6465 -2.7834 18 7 4.9767 11.7669 -3.4016 19 14 2.8909 10.2509 -2.3883 20 1 2.5487 10.7931 -1.0489 21 1 2.0086 10.8664 -3.4119 22 1 2.6987 8.7783 -2.3901 23 7 5.9504 5.2826 -1.0851 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 3.4231 3.4214 0.8905 32 1 3.4223 3.4223 -0.8895 33 1 5.7527 2.5761 -0.8918 34 1 5.7543 2.5749 0.8883 35 1 7.3035 8.3155 -0.8851 36 1 7.0547 7.3847 -2.3818 37 1 4.8317 7.4620 -3.3969 38 1 4.2748 12.3874 -3.6534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395458129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -70.139477 kcal Electronic energy + Delta-G solvation = -20237.396706 eV Core-core repulsion = 16889.081066 eV Total energy + Delta-G solvation = -3348.315640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.53908 -39.18216 -38.43696 -37.32475 -35.28556 -34.41741 -33.79372 -31.92784 -31.15022 -28.01259 -27.89956 -24.67457 -23.70069 -23.59041 -22.75359 -21.70967 -19.55898 -19.03505 -18.32479 -17.59498 -17.33043 -16.86880 -16.48509 -16.16838 -15.93979 -15.67554 -15.16699 -14.83486 -14.57254 -14.01194 -13.99634 -13.78589 -13.56872 -13.17835 -13.02935 -12.79366 -12.61368 -12.53461 -12.41058 -12.38287 -12.03244 -11.98254 -11.93519 -11.78893 -11.18629 -10.95039 -10.79080 -10.55562 -10.19925 -8.34837 -6.49058 0.15017 1.23619 1.39165 1.46312 1.74654 1.86931 2.43069 2.52650 2.86026 3.03486 3.10017 3.82003 3.92094 3.98188 4.10626 4.16262 4.20289 4.24997 4.34097 4.39191 4.45460 4.49586 4.51679 4.57076 4.82360 4.85497 4.91326 5.00435 5.03152 5.07658 5.11292 5.25752 5.36626 5.43366 6.08486 6.28252 6.64179 7.16080 7.18848 7.33676 8.78310 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.003912 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.893832 B = 7156.337665 C = 8270.795987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.421 6.421 4 C 0.069 3.931 5 C -0.108 4.108 6 C -0.017 4.017 7 C 0.167 3.833 8 N -0.411 5.411 9 O 0.056 5.944 10 C 0.208 3.792 11 C -0.040 4.040 12 C 0.206 3.794 13 H 0.051 0.949 14 O -0.582 6.582 15 C -0.557 4.557 16 H 0.058 0.942 17 C 0.037 3.963 18 N -0.932 5.932 19 Si 0.926 3.074 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.213 1.213 23 N -0.494 5.494 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.373 0.627 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -23.805 6.672 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.341 6.341 4 C -0.007 4.007 5 C -0.147 4.147 6 C -0.055 4.055 7 C -0.106 4.106 8 N -0.123 5.123 9 O 0.003 5.997 10 C -0.012 4.012 11 C -0.079 4.079 12 C 0.147 3.853 13 H 0.069 0.931 14 O -0.390 6.390 15 C -0.595 4.595 16 H 0.076 0.924 17 C -0.163 4.163 18 N -0.571 5.571 19 Si 0.751 3.249 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.135 1.135 23 N -0.228 5.228 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.222 0.778 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.461 -24.038 7.620 25.336 hybrid contribution -0.175 0.727 -0.471 0.884 sum -2.636 -23.311 7.149 24.524 Atomic orbital electron populations 1.21793 0.93452 1.03389 1.02403 1.22669 0.96039 0.82645 1.01224 1.87871 1.22116 1.28462 1.95693 1.22448 0.80871 0.95309 1.02075 1.21338 0.93821 0.97032 1.02517 1.19953 0.95707 0.83236 1.06626 1.26393 0.99535 1.01318 0.83367 1.74550 1.21121 0.91857 1.24817 1.85246 1.63434 1.25534 1.25523 1.29248 0.93280 0.97069 0.81560 1.21063 1.01042 0.87316 0.98466 1.19558 0.86482 0.87821 0.91441 0.93130 1.86655 1.45799 1.74078 1.32467 1.21659 0.95063 1.03499 1.39286 0.92388 1.25660 1.03485 0.93946 0.93255 1.70038 1.35110 1.11201 1.40753 0.86175 0.79871 0.81967 0.76882 1.21444 1.22402 1.13509 1.71918 1.19738 1.01640 1.29522 0.92743 0.88862 0.92637 0.92191 0.92072 0.91245 0.91160 0.92498 0.92437 0.86585 0.86849 0.86206 0.86048 0.77835 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.42 -9.21 10.34 -148.98 -1.54 -10.75 16 4 C 0.07 1.19 5.94 71.98 0.43 1.62 16 5 C -0.11 -2.42 5.57 30.59 0.17 -2.25 16 6 C -0.02 -0.34 5.84 29.85 0.17 -0.17 16 7 C 0.17 5.11 7.47 138.46 1.03 6.15 16 8 N -0.41 -13.84 12.16 -60.33 -0.73 -14.58 16 9 O 0.06 1.96 11.31 74.84 0.85 2.81 16 10 C 0.21 7.14 7.54 88.38 0.67 7.81 16 11 C -0.04 -1.34 5.46 29.85 0.16 -1.17 16 12 C 0.21 8.77 2.30 29.85 0.07 8.83 16 13 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 14 O -0.58 -24.67 9.90 -148.98 -1.47 -26.14 16 15 C -0.56 -28.68 9.34 25.60 0.24 -28.44 16 16 H 0.06 3.17 7.99 -2.91 -0.02 3.15 16 17 C 0.04 2.06 5.47 84.66 0.46 2.53 16 18 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 19 Si 0.93 44.29 26.99 68.60 1.85 46.14 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.21 -9.94 5.31 99.48 0.53 -9.41 16 23 N -0.49 -16.81 11.55 -303.20 -3.50 -20.31 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 37 H 0.37 13.81 9.04 -74.06 -0.67 13.14 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -67.33 326.34 0.58 -66.75 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.21 Total: 16.50 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.63 Total: -5.20 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -3.94 Total: -90.10 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -2.17 Total: -34.09 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.85 Total: 46.14 kcal Total: -67.33 0.58 -66.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395458129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.394 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds