Wall clock time and date at job start Mon Mar 30 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46493 * 109.46757 * 2 1 4 4 C 1.34781 * 119.99848 * 83.15140 * 3 2 1 5 5 O 1.21445 * 119.99853 * 184.04387 * 4 3 2 6 6 C 1.48828 * 119.99977 * 4.04333 * 4 3 2 7 7 O 1.21503 * 119.99930 * 354.25958 * 6 4 3 8 8 N 1.34780 * 120.00075 * 174.26256 * 6 4 3 9 9 C 1.36124 * 119.99795 * 179.97438 * 8 6 4 10 10 H 1.07993 * 120.00179 * 0.02562 * 9 8 6 11 11 C 1.39587 * 119.99546 * 180.27628 * 9 8 6 12 12 N 1.31009 * 120.00218 * 359.72492 * 11 9 8 13 13 Si 1.86800 * 119.99514 * 179.72531 * 11 9 8 14 14 H 1.48497 * 109.47247 * 60.00126 * 13 11 9 15 15 H 1.48507 * 109.46573 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47225 * 299.99840 * 13 11 9 17 17 C 1.46495 * 120.00403 * 263.13960 * 3 2 1 18 18 H 1.09000 * 109.52113 * 0.02562 * 17 3 2 19 19 C 1.53185 * 109.52050 * 120.13040 * 17 3 2 20 20 C 1.53189 * 109.03146 * 176.82792 * 19 17 3 21 21 C 1.53094 * 109.21478 * 303.11337 * 20 19 17 22 22 O 1.42906 * 109.41426 * 57.57525 * 21 20 19 23 23 C 1.42901 * 114.09723 * 298.84628 * 22 21 20 24 24 H 1.08998 * 109.46727 * 299.99400 * 1 2 3 25 25 H 1.08998 * 109.47224 * 59.99828 * 1 2 3 26 26 H 1.08997 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46485 * 240.00140 * 2 1 3 28 28 H 1.08993 * 109.47051 * 120.00880 * 2 1 3 29 29 H 0.96996 * 120.00021 * 359.97438 * 8 6 4 30 30 H 0.96997 * 120.00258 * 180.02562 * 12 11 9 31 31 H 1.08998 * 109.54253 * 296.75767 * 19 17 3 32 32 H 1.08993 * 109.53974 * 57.02499 * 19 17 3 33 33 H 1.09001 * 109.52231 * 183.17801 * 20 19 17 34 34 H 1.09000 * 109.52176 * 63.05080 * 20 19 17 35 35 H 1.09001 * 109.48299 * 297.59815 * 21 20 19 36 36 H 1.08993 * 109.48464 * 177.55781 * 21 20 19 37 37 H 1.09005 * 109.48174 * 301.16712 * 23 22 21 38 38 H 1.09001 * 109.47896 * 181.14060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1117 2.0629 1.1589 5 8 2.4461 3.2304 1.1514 6 6 1.8049 1.3850 2.4478 7 8 1.3706 0.2503 2.4491 8 7 2.0089 2.0298 3.6137 9 6 1.7278 1.4099 4.7925 10 1 1.3418 0.4013 4.7936 11 6 1.9336 2.0798 5.9997 12 7 2.4024 3.3031 5.9984 13 14 1.5407 1.2318 7.6171 14 1 2.3637 0.0024 7.7442 15 1 1.8456 2.1497 8.7440 16 1 0.1010 0.8692 7.6490 17 6 2.4053 2.0214 -1.2596 18 1 2.2625 1.3214 -2.0828 19 6 1.5400 3.2644 -1.4890 20 6 2.0064 3.9688 -2.7668 21 6 3.4935 4.3099 -2.6400 22 8 4.2363 3.1133 -2.3979 23 6 3.8769 2.4376 -1.1910 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3559 2.9355 3.6127 30 1 2.5458 3.7685 6.8372 31 1 0.4965 2.9677 -1.5951 32 1 1.6434 3.9420 -0.6416 33 1 1.4333 4.8853 -2.9075 34 1 1.8554 3.3099 -3.6219 35 1 3.6384 5.0017 -1.8103 36 1 3.8405 4.7723 -3.5640 37 1 4.0268 3.1050 -0.3423 38 1 4.5001 1.5514 -1.0712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402706794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:46 Heat of formation + Delta-G solvation = -111.176331 kcal Electronic energy + Delta-G solvation = -21850.000164 eV Core-core repulsion = 18499.905033 eV Total energy + Delta-G solvation = -3350.095131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38607 -38.72503 -37.14754 -35.81426 -34.13714 -33.03234 -31.44897 -31.08082 -28.91810 -25.93393 -24.95212 -24.07406 -23.13989 -21.61143 -20.44495 -18.79342 -17.99006 -16.77050 -16.49383 -16.00701 -15.40899 -15.15092 -14.87875 -14.55586 -14.44725 -14.02013 -13.82385 -13.48965 -13.04529 -12.73267 -12.67009 -12.57863 -12.09634 -11.82699 -11.75256 -11.56411 -11.23598 -11.04375 -10.81578 -10.67434 -10.54650 -10.44732 -10.40518 -10.04581 -9.69973 -9.41623 -8.35072 -8.23953 -7.92865 -6.70023 -4.02239 2.39554 3.08330 3.14656 3.14885 3.22208 3.95551 4.05385 4.20823 4.65374 4.89123 4.93913 4.96782 5.07077 5.15347 5.28108 5.41139 5.44170 5.67110 5.75714 5.80188 5.87001 5.89693 5.92300 5.95392 5.98364 6.12172 6.18491 6.41286 6.54512 6.71527 6.94997 7.25455 7.28124 7.64670 7.76506 8.28976 8.56546 8.92989 9.28842 9.82259 10.44614 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.027959 B = 0.005018 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.235644 B = 5578.231709 C = 6184.064923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.591 5.591 4 C 0.515 3.485 5 O -0.544 6.544 6 C 0.392 3.608 7 O -0.586 6.586 8 N -0.498 5.498 9 C -0.306 4.306 10 H 0.112 0.888 11 C 0.032 3.968 12 N -0.869 5.869 13 Si 0.939 3.061 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.121 3.879 18 H 0.089 0.911 19 C -0.143 4.143 20 C -0.149 4.149 21 C 0.058 3.942 22 O -0.382 6.382 23 C 0.045 3.955 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.404 0.596 30 H 0.281 0.719 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -0.616 -13.091 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.326 5.326 4 C 0.302 3.698 5 O -0.422 6.422 6 C 0.177 3.823 7 O -0.475 6.475 8 N -0.131 5.131 9 C -0.436 4.436 10 H 0.130 0.870 11 C -0.175 4.175 12 N -0.507 5.507 13 Si 0.764 3.236 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.017 3.983 18 H 0.107 0.893 19 C -0.181 4.181 20 C -0.187 4.187 21 C -0.019 4.019 22 O -0.300 6.300 23 C -0.033 4.033 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.239 0.761 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.173 -0.641 -13.070 13.087 hybrid contribution -0.347 0.279 0.844 0.954 sum -0.520 -0.362 -12.226 12.242 Atomic orbital electron populations 1.22039 0.96137 1.01595 1.01460 1.22150 0.94868 0.81209 1.04166 1.47804 1.64723 1.14886 1.05175 1.20732 0.77187 0.86206 0.85711 1.90617 1.47645 1.16488 1.87449 1.18921 0.90873 0.88278 0.84226 1.90461 1.52736 1.18509 1.85771 1.41573 1.50999 1.16289 1.04288 1.19824 1.40966 1.00903 0.81940 0.86980 1.25580 0.95913 0.95551 1.00479 1.69469 1.40608 1.11029 1.29551 0.85790 0.79470 0.78922 0.79380 1.19369 1.20605 1.19389 1.21654 0.95100 0.95210 0.86365 0.89290 1.22095 0.99140 0.97873 0.99021 1.22156 0.97044 1.01187 0.98317 1.22591 0.90871 0.87137 1.01269 1.87892 1.61090 1.38734 1.42287 1.23020 0.94366 0.97896 0.87973 0.91490 0.94299 0.92220 0.92414 0.85816 0.76085 0.90848 0.91682 0.88838 0.90822 0.91435 0.92769 0.89128 0.90654 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.74 37.16 0.36 -2.00 16 2 C 0.10 1.55 5.71 -4.04 -0.02 1.53 16 3 N -0.59 -10.20 2.45 -166.69 -0.41 -10.60 16 4 C 0.51 10.82 7.06 -11.88 -0.08 10.74 16 5 O -0.54 -12.03 12.66 5.41 0.07 -11.96 16 6 C 0.39 9.42 7.59 -11.88 -0.09 9.33 16 7 O -0.59 -14.39 11.39 5.36 0.06 -14.33 16 8 N -0.50 -12.88 5.24 -11.59 -0.06 -12.94 16 9 C -0.31 -8.17 9.67 -15.14 -0.15 -8.31 16 10 H 0.11 3.04 7.15 -52.49 -0.38 2.66 16 11 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 12 N -0.87 -22.91 13.03 55.53 0.72 -22.18 16 13 Si 0.94 19.72 29.56 -169.99 -5.02 14.70 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 C 0.12 1.79 2.75 -67.79 -0.19 1.60 16 18 H 0.09 1.16 7.71 -51.93 -0.40 0.76 16 19 C -0.14 -2.04 5.28 -26.54 -0.14 -2.18 16 20 C -0.15 -1.69 6.13 -26.59 -0.16 -1.85 16 21 C 0.06 0.70 6.84 37.21 0.25 0.95 16 22 O -0.38 -5.53 10.77 -35.23 -0.38 -5.90 16 23 C 0.04 0.69 6.09 37.20 0.23 0.91 16 24 H 0.07 1.24 7.03 -51.93 -0.37 0.87 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.74 7.78 -51.93 -0.40 0.34 16 28 H 0.12 2.30 5.38 -51.94 -0.28 2.02 16 29 H 0.40 10.63 7.36 -40.82 -0.30 10.33 16 30 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.60 5.96 -51.93 -0.31 1.29 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.33 6.24 -51.93 -0.32 1.01 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -28.13 306.84 -5.76 -33.88 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -5.27 Total: 13.29 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.09 Total: 11.43 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.26 Total: -45.73 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.25 Total: -32.20 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.13 -5.76 -33.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402706794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.295 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds