Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.50051 * 110.99762 * 2 1 4 4 C 1.50859 * 102.37466 * 213.12317 * 3 2 1 5 5 H 1.09001 * 109.33513 * 290.45736 * 4 3 2 6 6 C 1.57937 * 98.84378 * 45.21617 * 4 3 2 7 7 H 1.09005 * 109.78428 * 66.35552 * 6 4 3 8 8 C 1.50794 * 99.76369 * 181.98452 * 6 4 3 9 9 C 1.55979 * 102.83538 * 326.26573 * 8 6 4 10 10 N 1.44259 * 126.65598 * 155.05665 * 4 3 2 11 11 C 1.46895 * 111.00233 * 83.91061 * 10 4 3 12 12 C 1.52998 * 109.47060 * 183.60657 * 11 10 4 13 13 C 1.52997 * 109.47140 * 179.97438 * 12 11 10 14 14 S 1.81005 * 109.47178 * 180.02562 * 13 12 11 15 15 C 1.76202 * 100.00168 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99696 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00117 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99810 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99915 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46984 * 89.99685 * 19 17 15 21 21 H 1.48498 * 109.46900 * 209.99767 * 19 17 15 22 22 H 1.48503 * 109.47305 * 329.99848 * 19 17 15 23 23 C 1.49559 * 111.00000 * 240.21004 * 2 1 3 24 24 H 1.08996 * 109.46819 * 179.66602 * 1 2 3 25 25 H 1.09003 * 109.47171 * 299.66466 * 1 2 3 26 26 H 1.08997 * 109.46969 * 59.66455 * 1 2 3 27 27 H 1.09003 * 110.82138 * 331.34202 * 3 2 1 28 28 H 1.08996 * 110.82593 * 94.90047 * 3 2 1 29 29 H 1.08997 * 110.74897 * 84.60106 * 8 6 4 30 30 H 1.09004 * 110.74061 * 207.93151 * 8 6 4 31 31 H 1.09001 * 110.10531 * 125.37799 * 9 8 6 32 32 H 1.09003 * 110.10548 * 246.93927 * 9 8 6 33 33 H 1.08997 * 109.47010 * 303.60637 * 11 10 4 34 34 H 1.09000 * 109.46985 * 63.60861 * 11 10 4 35 35 H 1.08997 * 109.47193 * 299.99868 * 12 11 10 36 36 H 1.09000 * 109.47055 * 60.00247 * 12 11 10 37 37 H 1.08992 * 109.47482 * 300.00163 * 13 12 11 38 38 H 1.09000 * 109.46861 * 60.00230 * 13 12 11 39 39 H 0.96997 * 119.99827 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.35265 * 233.64991 * 23 2 1 41 41 H 1.08997 * 110.35520 * 355.94684 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0067 1.4009 0.0000 4 6 3.2747 1.2605 -0.8052 5 1 4.0041 0.6873 -0.2329 6 6 2.7132 0.3816 -1.9912 7 1 1.9933 0.9600 -2.5704 8 6 3.9796 0.1852 -2.7859 9 6 4.7421 1.5270 -2.5597 10 7 3.9411 2.3003 -1.5508 11 6 4.8175 3.0940 -0.6792 12 6 5.4356 4.2390 -1.4839 13 6 6.3480 5.0661 -0.5760 14 16 7.0787 6.4212 -1.5278 15 6 8.0527 7.1855 -0.2741 16 1 8.0593 6.7799 0.7269 17 6 8.8123 8.3080 -0.5731 18 7 9.5395 8.8792 0.3636 19 14 8.8014 9.0090 -2.3046 20 1 7.7172 10.0168 -2.4237 21 1 10.1094 9.6534 -2.5859 22 1 8.5689 7.9141 -3.2805 23 6 2.0050 -0.6937 -1.2117 24 1 -0.3633 -1.0276 -0.0060 25 1 -0.3634 0.5086 0.8930 26 1 -0.3633 0.5190 -0.8869 27 1 1.3109 2.0830 -0.4886 28 1 2.2268 1.7315 1.0150 29 1 4.5536 -0.6553 -2.3961 30 1 3.7540 0.0430 -3.8428 31 1 5.7416 1.3292 -2.1724 32 1 4.8064 2.0837 -3.4946 33 1 4.2351 3.5031 0.1463 34 1 5.6100 2.4580 -0.2846 35 1 6.0181 3.8299 -2.3094 36 1 4.6432 4.8750 -1.8784 37 1 5.7653 5.4752 0.2493 38 1 7.1405 4.4304 -0.1811 39 1 10.0701 9.6639 0.1547 40 1 2.7064 -1.4760 -0.9216 41 1 1.1892 -1.1137 -1.8001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590012736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = 19.631325 kcal Electronic energy + Delta-G solvation = -18493.349443 eV Core-core repulsion = 15727.512523 eV Total energy + Delta-G solvation = -2765.836920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86935 -37.11927 -34.18653 -32.42959 -31.39526 -30.23844 -27.96398 -25.82077 -25.46086 -24.86462 -22.05498 -21.25061 -20.59065 -19.76542 -17.45689 -16.94895 -15.87373 -15.33410 -15.18074 -14.96052 -14.91197 -14.15238 -14.07700 -13.91806 -13.49740 -12.95401 -12.81546 -12.73076 -12.52315 -11.98007 -11.93396 -11.76360 -11.58093 -11.41448 -11.24707 -11.03805 -10.99473 -10.89922 -10.46622 -10.39709 -10.04185 -9.74772 -8.99599 -8.72558 -8.60058 -8.54876 -6.93036 -6.27464 -3.99526 3.00920 3.30909 3.35480 3.46297 3.60517 3.62496 4.05989 4.32603 4.54224 4.67282 4.77576 4.83216 4.91966 4.98248 5.02434 5.11199 5.13196 5.18507 5.28584 5.32400 5.36336 5.44719 5.53389 5.54608 5.63199 5.64760 5.68382 5.77142 5.83221 5.87449 5.99041 6.03963 6.22891 6.36880 6.47982 6.60859 6.67285 6.73060 7.05146 7.96438 8.45312 9.18526 10.82123 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.042743 B = 0.003158 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.917145 B = 8864.287819 C = 9207.440348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.530 5.530 3 C 0.060 3.940 4 C 0.041 3.959 5 H 0.054 0.946 6 C -0.131 4.131 7 H 0.081 0.919 8 C -0.109 4.109 9 C 0.034 3.966 10 N -0.492 5.492 11 C 0.048 3.952 12 C -0.094 4.094 13 C -0.082 4.082 14 S -0.216 6.216 15 C -0.502 4.502 16 H 0.088 0.912 17 C 0.091 3.909 18 N -0.883 5.883 19 Si 0.862 3.138 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.238 1.238 23 C 0.054 3.946 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.270 0.730 40 H 0.080 0.920 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 -19.590 -4.666 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.254 5.254 3 C -0.067 4.067 4 C -0.070 4.070 5 H 0.072 0.928 6 C -0.151 4.151 7 H 0.100 0.900 8 C -0.148 4.148 9 C -0.093 4.093 10 N -0.216 5.216 11 C -0.082 4.082 12 C -0.133 4.133 13 C -0.231 4.231 14 S 0.012 5.988 15 C -0.649 4.649 16 H 0.106 0.894 17 C -0.117 4.117 18 N -0.520 5.520 19 Si 0.687 3.313 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.162 1.162 23 C -0.073 4.073 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.078 -19.029 -5.467 25.504 hybrid contribution 0.674 0.181 0.446 0.828 sum -15.403 -18.848 -5.021 24.854 Atomic orbital electron populations 1.22537 0.87621 1.01967 1.00914 1.65103 1.08240 1.13920 1.38155 1.22271 0.94827 0.89416 1.00211 1.22597 0.96318 0.92916 0.95178 0.92764 1.22391 0.97801 0.97947 0.96952 0.90016 1.21779 0.95244 0.97379 1.00397 1.23800 0.95603 0.92852 0.97079 1.64510 1.25130 1.18659 1.13302 1.22403 0.94896 0.95357 0.95497 1.21271 0.98530 0.95705 0.97811 1.23018 1.00435 0.98986 1.00676 1.84152 1.59222 1.33914 1.21488 1.22132 1.30287 1.15763 0.96733 0.89446 1.24802 0.93781 0.95385 0.97741 1.69939 1.27880 1.21079 1.33054 0.86662 0.78234 0.81244 0.85156 1.19360 1.20136 1.16171 1.22176 0.98936 0.96264 0.89943 0.91288 0.91177 0.95349 0.92210 0.89766 0.91192 0.90763 0.92711 0.89614 0.90588 0.94401 0.91669 0.90730 0.91416 0.91616 0.91990 0.90195 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.24 60.07 0.55 0.69 16 2 N -0.53 -4.98 5.57 -240.63 -1.34 -6.32 16 3 C 0.06 0.61 6.58 -3.13 -0.02 0.59 16 4 C 0.04 0.44 2.31 -67.49 -0.16 0.28 16 5 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 6 C -0.13 -1.20 3.01 -90.26 -0.27 -1.47 16 7 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.11 -0.93 6.80 -26.24 -0.18 -1.11 16 9 C 0.03 0.36 5.87 -0.35 0.00 0.36 16 10 N -0.49 -5.93 5.28 -221.83 -1.17 -7.10 16 11 C 0.05 0.64 4.76 -3.83 -0.02 0.62 16 12 C -0.09 -1.49 5.28 -26.73 -0.14 -1.63 16 13 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 14 S -0.22 -5.32 19.41 -107.50 -2.09 -7.41 16 15 C -0.50 -14.72 10.04 30.94 0.31 -14.41 16 16 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 17 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 18 N -0.88 -27.02 13.97 55.49 0.78 -26.24 16 19 Si 0.86 21.74 27.74 -169.99 -4.72 17.03 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 23 C 0.05 0.45 6.73 -3.59 -0.02 0.43 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.21 8.11 -51.93 -0.42 -0.21 16 27 H 0.06 0.62 7.85 -51.93 -0.41 0.21 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.59 7.64 -51.93 -0.40 0.19 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.50 7.85 -51.93 -0.41 0.09 16 35 H 0.06 1.02 7.52 -51.93 -0.39 0.63 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 38 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 39 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -30.88 333.43 -10.84 -41.72 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.49 Total: -2.23 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 0.17 Total: -14.46 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -1.74 Total: -39.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -2.09 Total: -7.41 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.88 -10.84 -41.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590012736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.347 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds