Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.50051 * 110.99762 * 2 1 4 4 C 1.50859 * 102.37466 * 213.12317 * 3 2 1 5 5 H 1.09001 * 109.33513 * 290.45736 * 4 3 2 6 6 C 1.57937 * 98.84378 * 45.21617 * 4 3 2 7 7 H 1.09005 * 109.78428 * 66.35552 * 6 4 3 8 8 C 1.50794 * 99.76369 * 181.98452 * 6 4 3 9 9 C 1.55979 * 102.83538 * 326.26573 * 8 6 4 10 10 N 1.44259 * 126.65598 * 155.05665 * 4 3 2 11 11 C 1.46895 * 111.00233 * 83.91061 * 10 4 3 12 12 C 1.52998 * 109.47060 * 183.60657 * 11 10 4 13 13 C 1.52997 * 109.47140 * 179.97438 * 12 11 10 14 14 S 1.81005 * 109.47178 * 180.02562 * 13 12 11 15 15 C 1.76202 * 100.00168 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99696 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00117 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99810 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99915 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46984 * 89.99685 * 19 17 15 21 21 H 1.48498 * 109.46900 * 209.99767 * 19 17 15 22 22 H 1.48503 * 109.47305 * 329.99848 * 19 17 15 23 23 C 1.49559 * 111.00000 * 240.21004 * 2 1 3 24 24 H 1.08996 * 109.46819 * 179.66602 * 1 2 3 25 25 H 1.09003 * 109.47171 * 299.66466 * 1 2 3 26 26 H 1.08997 * 109.46969 * 59.66455 * 1 2 3 27 27 H 1.09003 * 110.82138 * 331.34202 * 3 2 1 28 28 H 1.08996 * 110.82593 * 94.90047 * 3 2 1 29 29 H 1.08997 * 110.74897 * 84.60106 * 8 6 4 30 30 H 1.09004 * 110.74061 * 207.93151 * 8 6 4 31 31 H 1.09001 * 110.10531 * 125.37799 * 9 8 6 32 32 H 1.09003 * 110.10548 * 246.93927 * 9 8 6 33 33 H 1.08997 * 109.47010 * 303.60637 * 11 10 4 34 34 H 1.09000 * 109.46985 * 63.60861 * 11 10 4 35 35 H 1.08997 * 109.47193 * 299.99868 * 12 11 10 36 36 H 1.09000 * 109.47055 * 60.00247 * 12 11 10 37 37 H 1.08992 * 109.47482 * 300.00163 * 13 12 11 38 38 H 1.09000 * 109.46861 * 60.00230 * 13 12 11 39 39 H 0.96997 * 119.99827 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.35265 * 233.64991 * 23 2 1 41 41 H 1.08997 * 110.35520 * 355.94684 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0067 1.4009 0.0000 4 6 3.2747 1.2605 -0.8052 5 1 4.0041 0.6873 -0.2329 6 6 2.7132 0.3816 -1.9912 7 1 1.9933 0.9600 -2.5704 8 6 3.9796 0.1852 -2.7859 9 6 4.7421 1.5270 -2.5597 10 7 3.9411 2.3003 -1.5508 11 6 4.8175 3.0940 -0.6792 12 6 5.4356 4.2390 -1.4839 13 6 6.3480 5.0661 -0.5760 14 16 7.0787 6.4212 -1.5278 15 6 8.0527 7.1855 -0.2741 16 1 8.0593 6.7799 0.7269 17 6 8.8123 8.3080 -0.5731 18 7 9.5395 8.8792 0.3636 19 14 8.8014 9.0090 -2.3046 20 1 7.7172 10.0168 -2.4237 21 1 10.1094 9.6534 -2.5859 22 1 8.5689 7.9141 -3.2805 23 6 2.0050 -0.6937 -1.2117 24 1 -0.3633 -1.0276 -0.0060 25 1 -0.3634 0.5086 0.8930 26 1 -0.3633 0.5190 -0.8869 27 1 1.3109 2.0830 -0.4886 28 1 2.2268 1.7315 1.0150 29 1 4.5536 -0.6553 -2.3961 30 1 3.7540 0.0430 -3.8428 31 1 5.7416 1.3292 -2.1724 32 1 4.8064 2.0837 -3.4946 33 1 4.2351 3.5031 0.1463 34 1 5.6100 2.4580 -0.2846 35 1 6.0181 3.8299 -2.3094 36 1 4.6432 4.8750 -1.8784 37 1 5.7653 5.4752 0.2493 38 1 7.1405 4.4304 -0.1811 39 1 10.0701 9.6639 0.1547 40 1 2.7064 -1.4760 -0.9216 41 1 1.1892 -1.1137 -1.8001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590012736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = -1.736151 kcal Electronic energy + Delta-G solvation = -18494.276006 eV Core-core repulsion = 15727.512523 eV Total energy + Delta-G solvation = -2766.763483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.66272 -37.97662 -35.28364 -34.69720 -32.40572 -30.97894 -28.82446 -27.97401 -26.41691 -25.88816 -23.06372 -22.20210 -21.42514 -20.63748 -19.61059 -17.76980 -17.12685 -16.79512 -16.43724 -16.17292 -15.83378 -15.55986 -14.96610 -14.93179 -14.73685 -14.44470 -13.87381 -13.75017 -13.66539 -13.32752 -13.06271 -13.00975 -12.71911 -12.66840 -12.44394 -12.36871 -12.06177 -11.96154 -11.73035 -11.60808 -11.59488 -11.17406 -11.04556 -10.58030 -9.54712 -9.40501 -9.00684 -8.53081 -6.24610 1.11388 1.31665 1.47179 1.72532 2.24128 2.55493 2.67914 2.84951 2.91742 3.21723 3.81360 3.86812 3.93141 4.02494 4.17774 4.20016 4.27508 4.31009 4.36580 4.42756 4.49617 4.56138 4.62067 4.67603 4.71716 4.75405 4.84926 4.89188 4.92853 5.00467 5.06666 5.09085 5.19650 5.25253 5.32131 5.65115 5.68586 5.81713 5.95532 6.08781 6.13691 6.90895 8.60206 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.042743 B = 0.003158 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.917145 B = 8864.287819 C = 9207.440348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.062 3.938 4 C 0.036 3.964 5 H 0.046 0.954 6 C -0.119 4.119 7 H 0.073 0.927 8 C -0.102 4.102 9 C 0.028 3.972 10 N -0.501 5.501 11 C 0.058 3.942 12 C -0.080 4.080 13 C -0.070 4.070 14 S -0.218 6.218 15 C -0.523 4.523 16 H 0.049 0.951 17 C 0.037 3.963 18 N -0.923 5.923 19 Si 0.927 3.073 20 H -0.261 1.261 21 H -0.262 1.262 22 H -0.228 1.228 23 C 0.056 3.944 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.277 0.723 40 H 0.083 0.917 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 -20.917 -6.441 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.066 4.066 4 C -0.075 4.075 5 H 0.064 0.936 6 C -0.139 4.139 7 H 0.092 0.908 8 C -0.141 4.141 9 C -0.099 4.099 10 N -0.225 5.225 11 C -0.072 4.072 12 C -0.119 4.119 13 C -0.219 4.219 14 S 0.010 5.990 15 C -0.671 4.671 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.561 5.561 19 Si 0.748 3.252 20 H -0.186 1.186 21 H -0.187 1.187 22 H -0.152 1.152 23 C -0.071 4.071 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.259 -20.371 -7.236 27.662 hybrid contribution 0.991 0.512 1.102 1.568 sum -16.269 -19.859 -6.134 26.394 Atomic orbital electron populations 1.22584 0.86513 1.02865 1.01079 1.65100 1.09399 1.13262 1.38885 1.22223 0.94528 0.90026 0.99789 1.22602 0.96235 0.92683 0.95955 0.93619 1.22352 0.97763 0.97682 0.96132 0.90845 1.21763 0.94600 0.96431 1.01292 1.23884 0.95652 0.93825 0.96491 1.64476 1.25073 1.19464 1.13441 1.22214 0.95091 0.94701 0.95233 1.21127 0.97595 0.95832 0.97298 1.23077 1.00688 0.97386 1.00735 1.83831 1.58639 1.35640 1.20923 1.22345 1.31503 1.16495 0.96710 0.93241 1.25803 0.93179 0.95622 1.02174 1.70038 1.28757 1.21854 1.35465 0.85695 0.78995 0.80751 0.79785 1.18585 1.18665 1.15176 1.22212 0.99408 0.95910 0.89571 0.90007 0.91036 0.95194 0.92629 0.90264 0.90225 0.89281 0.92995 0.89691 0.90630 0.94261 0.91254 0.91027 0.91683 0.91751 0.91364 0.89864 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.24 127.69 1.18 1.42 16 2 N -0.54 -9.29 5.57 -915.22 -5.10 -14.39 16 3 C 0.06 1.19 6.58 84.99 0.56 1.75 16 4 C 0.04 0.72 2.31 46.47 0.11 0.83 16 5 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 6 C -0.12 -1.94 3.01 -10.56 -0.03 -1.97 16 7 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 8 C -0.10 -1.50 6.80 30.91 0.21 -1.29 16 9 C 0.03 0.55 5.87 86.68 0.51 1.06 16 10 N -0.50 -11.37 5.28 -855.73 -4.52 -15.89 16 11 C 0.06 1.46 4.76 86.30 0.41 1.87 16 12 C -0.08 -2.41 5.28 30.59 0.16 -2.25 16 13 C -0.07 -2.72 5.67 71.98 0.41 -2.31 16 14 S -0.22 -10.67 19.41 -56.49 -1.10 -11.77 16 15 C -0.52 -31.32 10.04 67.95 0.68 -30.64 16 16 H 0.05 3.22 8.03 -2.91 -0.02 3.20 16 17 C 0.04 2.19 5.50 84.86 0.47 2.66 16 18 N -0.92 -57.47 13.97 21.65 0.30 -57.16 16 19 Si 0.93 44.54 27.74 68.60 1.90 46.44 16 20 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.23 -10.55 6.74 99.48 0.67 -9.88 16 23 C 0.06 0.81 6.73 84.98 0.57 1.38 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.03 0.38 8.11 -2.39 -0.02 0.37 16 27 H 0.06 1.10 7.85 -2.39 -0.02 1.08 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.04 7.64 -2.39 -0.02 1.02 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 35 H 0.07 2.06 7.52 -2.39 -0.02 2.04 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.56 8.14 -2.40 -0.02 2.54 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 0.91 7.65 -2.39 -0.02 0.89 16 Total: -1.00 -66.19 333.43 -2.35 -68.54 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.93 Total: 11.70 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 5.23 Total: -27.48 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -9.32 Total: -87.44 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.44 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.10 Total: -11.77 kcal Total: -66.19 -2.35 -68.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590012736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.804 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds