Wall clock time and date at job start Mon Mar 30 2020 04:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46496 * 109.46775 * 2 1 4 4 O 1.41458 * 124.16302 * 254.70072 * 3 2 1 5 5 C 1.44229 * 107.74499 * 161.10243 * 4 3 2 6 6 C 1.54606 * 102.46483 * 27.26001 * 5 4 3 7 7 H 1.08999 * 110.72857 * 216.28393 * 6 5 4 8 8 N 1.46893 * 110.73431 * 92.97466 * 6 5 4 9 9 C 1.47852 * 110.99752 * 300.94043 * 8 6 5 10 10 C 1.54910 * 104.79476 * 213.63788 * 9 8 6 11 11 C 1.55146 * 101.65112 * 37.07109 * 10 9 8 12 12 O 1.42902 * 110.70477 * 82.72816 * 11 10 9 13 13 C 1.50700 * 110.85348 * 205.88992 * 11 10 9 14 14 H 1.08007 * 119.99892 * 20.83516 * 13 11 10 15 15 C 1.37877 * 120.00018 * 200.83463 * 13 11 10 16 16 N 1.31516 * 119.99747 * 173.56134 * 15 13 11 17 17 Si 1.86797 * 120.00153 * 353.55835 * 15 13 11 18 18 H 1.48506 * 109.46871 * 86.34641 * 17 15 13 19 19 H 1.48497 * 109.47420 * 206.34585 * 17 15 13 20 20 H 1.48498 * 109.47011 * 326.34790 * 17 15 13 21 21 C 1.47445 * 110.99945 * 180.10230 * 8 6 5 22 22 C 1.34777 * 124.16222 * 75.00188 * 3 2 1 23 23 O 1.21280 * 126.24246 * 1.17409 * 22 3 2 24 24 H 1.08999 * 109.46976 * 60.00091 * 1 2 3 25 25 H 1.09003 * 109.46523 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46736 * 300.00061 * 1 2 3 27 27 H 1.08999 * 109.46976 * 119.99909 * 2 1 3 28 28 H 1.08999 * 109.47236 * 240.00093 * 2 1 3 29 29 H 1.09003 * 111.01910 * 268.93812 * 5 4 3 30 30 H 1.08998 * 110.81074 * 145.48792 * 5 4 3 31 31 H 1.09002 * 110.37080 * 332.46456 * 9 8 6 32 32 H 1.08992 * 110.37103 * 94.80957 * 9 8 6 33 33 H 1.08999 * 110.99185 * 278.97935 * 10 9 8 34 34 H 1.09003 * 111.02415 * 155.17420 * 10 9 8 35 35 H 0.96708 * 113.99997 * 61.07483 * 12 11 10 36 36 H 0.96997 * 119.99483 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.88569 * 242.66314 * 21 8 6 38 38 H 1.09003 * 109.88720 * 3.68761 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 8 2.5743 2.0272 -1.1290 5 6 2.5193 3.4491 -0.8933 6 6 2.5618 3.5334 0.6499 7 1 1.9329 4.3479 1.0092 8 7 3.9429 3.6927 1.1241 9 6 4.7875 2.5611 0.6856 10 6 5.8049 2.3578 1.8360 11 6 4.9294 2.6479 3.0835 12 8 4.1802 1.4893 3.4555 13 6 5.7771 3.1243 4.2348 14 1 6.7565 3.5398 4.0486 15 6 5.3024 3.0297 5.5258 16 7 6.0876 3.3260 6.5384 17 14 3.5442 2.4807 5.8367 18 1 3.4909 0.9975 5.8902 19 1 3.0721 3.0399 7.1288 20 1 2.6720 2.9680 4.7381 21 6 3.9906 3.7713 2.5957 22 6 1.9985 2.1910 1.0772 23 8 1.6025 1.8997 2.1859 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.5922 3.8737 -1.2786 30 1 3.3833 3.9480 -1.3321 31 1 4.1816 1.6649 0.5520 32 1 5.3061 2.8111 -0.2399 33 1 6.6264 3.0703 1.7612 34 1 6.1788 1.3340 1.8509 35 1 4.7263 0.7270 3.6919 36 1 5.7535 3.2598 7.4466 37 1 4.3820 4.7411 2.9027 38 1 2.9915 3.6277 3.0072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595564348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:55 Heat of formation + Delta-G solvation = -43.943544 kcal Electronic energy + Delta-G solvation = -22964.021749 eV Core-core repulsion = 19616.842050 eV Total energy + Delta-G solvation = -3347.179699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96754 -38.15387 -37.22508 -35.19183 -34.01865 -32.25028 -31.23000 -29.78434 -28.45731 -27.92044 -24.26148 -24.18609 -22.71328 -20.78620 -20.10610 -19.68625 -17.34328 -17.11093 -16.97257 -15.93473 -15.26381 -15.05885 -14.99342 -14.64272 -14.20505 -13.81753 -13.57824 -13.48392 -13.18513 -12.77619 -12.57199 -12.43465 -12.15791 -11.93984 -11.69553 -11.39384 -11.26237 -11.21590 -10.74373 -10.70417 -10.45126 -10.21930 -10.05613 -9.77877 -9.07723 -8.59420 -8.47943 -8.40920 -7.87758 -6.10338 -4.21294 1.94664 2.64243 3.58504 3.62980 3.86242 3.91592 4.27347 4.45986 4.61376 4.72394 4.92474 5.02248 5.08263 5.17195 5.23073 5.27708 5.44404 5.46873 5.52549 5.71407 5.75565 5.84240 5.97755 6.01259 6.15426 6.28886 6.38774 6.57901 6.69253 6.83915 7.19898 7.22066 7.27797 7.38655 7.62374 8.18332 8.24251 8.77726 8.94000 9.53173 10.98427 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.007815 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.886531 B = 3581.867818 C = 4113.093230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.142 3.858 3 N -0.492 5.492 4 O -0.155 6.155 5 C 0.037 3.963 6 C 0.021 3.979 7 H 0.121 0.879 8 N -0.501 5.501 9 C 0.032 3.968 10 C -0.143 4.143 11 C 0.210 3.790 12 O -0.556 6.556 13 C -0.550 4.550 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.936 3.064 18 H -0.292 1.292 19 H -0.327 1.327 20 H -0.257 1.257 21 C 0.040 3.960 22 C 0.487 3.513 23 O -0.473 6.473 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.364 0.636 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 -3.544 -16.189 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.022 3.978 3 N -0.276 5.276 4 O -0.158 6.158 5 C -0.040 4.040 6 C -0.093 4.093 7 H 0.139 0.861 8 N -0.226 5.226 9 C -0.095 4.095 10 C -0.181 4.181 11 C 0.169 3.831 12 O -0.362 6.362 13 C -0.587 4.587 14 H 0.096 0.904 15 C -0.129 4.129 16 N -0.528 5.528 17 Si 0.771 3.229 18 H -0.220 1.220 19 H -0.258 1.258 20 H -0.183 1.183 21 C -0.086 4.086 22 C 0.272 3.728 23 O -0.343 6.343 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.211 0.789 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.030 -2.980 -15.931 18.553 hybrid contribution -0.598 -1.130 0.591 1.408 sum -9.628 -4.110 -15.340 18.572 Atomic orbital electron populations 1.22229 0.95430 1.02603 1.02797 1.21470 0.94058 0.78546 1.03692 1.50482 1.62239 1.11970 1.02919 1.90914 1.80342 1.18584 1.25939 1.23968 1.04057 0.81222 0.94802 1.23466 0.94141 0.96182 0.95501 0.86076 1.64137 1.03757 1.40991 1.13718 1.23209 0.95494 0.92154 0.98646 1.23270 0.98149 1.01132 0.95579 1.20269 0.87681 0.82919 0.92192 1.86276 1.38589 1.23400 1.87969 1.21240 1.03657 1.44117 0.89689 0.90439 1.25109 0.98693 0.93331 0.95784 1.69980 1.36420 1.47316 0.99037 0.85928 0.83922 0.78204 0.74866 1.21960 1.25830 1.18258 1.23502 1.01514 1.00549 0.83027 1.21881 0.78604 0.88429 0.83925 1.90849 1.45543 1.78851 1.19057 0.92269 0.90942 0.91795 0.89276 0.89406 0.90134 0.85978 0.92738 0.91159 0.90550 0.91850 0.78891 0.92609 0.88751 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.13 37.16 0.38 -1.43 16 2 C 0.14 1.71 6.94 -4.04 -0.03 1.68 16 3 N -0.49 -7.28 2.86 -59.91 -0.17 -7.45 16 4 O -0.15 -2.09 11.31 -11.40 -0.13 -2.22 16 5 C 0.04 0.43 7.24 38.00 0.27 0.70 16 6 C 0.02 0.32 3.10 -67.52 -0.21 0.11 16 7 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 8 N -0.50 -8.95 5.21 -223.06 -1.16 -10.11 16 9 C 0.03 0.56 5.41 -2.29 -0.01 0.55 16 10 C -0.14 -2.81 6.23 -24.59 -0.15 -2.96 16 11 C 0.21 4.85 0.68 -89.95 -0.06 4.79 16 12 O -0.56 -12.97 8.23 -37.28 -0.31 -13.28 16 13 C -0.55 -15.11 8.71 -34.44 -0.30 -15.41 16 14 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 15 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 16 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 17 Si 0.94 24.86 24.90 -169.99 -4.23 20.63 16 18 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 19 H -0.33 -8.86 7.11 56.52 0.40 -8.46 16 20 H -0.26 -6.93 5.18 56.52 0.29 -6.64 16 21 C 0.04 0.88 5.23 -2.84 -0.01 0.87 16 22 C 0.49 8.61 5.88 -10.48 -0.06 8.55 16 23 O -0.47 -10.26 15.99 3.51 0.06 -10.20 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.12 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.05 0.98 5.07 -51.93 -0.26 0.71 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.53 7.99 -51.93 -0.42 1.11 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.36 7.71 9.07 45.56 0.41 8.13 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.09 2.13 7.82 -51.93 -0.41 1.72 16 38 H 0.07 1.71 4.50 -51.93 -0.23 1.48 16 LS Contribution 298.94 15.07 4.51 4.51 Total: -1.00 -33.66 298.94 -5.74 -39.41 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.79 Total: 5.74 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.29 Total: -0.47 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.56 Total: -44.10 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.38 Total: -25.71 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -4.23 Total: 20.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.66 -5.74 -39.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595564348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.536 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds