Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46496 * 109.46775 * 2 1 4 4 O 1.41458 * 124.16302 * 254.70072 * 3 2 1 5 5 C 1.44229 * 107.74499 * 161.10243 * 4 3 2 6 6 C 1.54606 * 102.46483 * 27.26001 * 5 4 3 7 7 H 1.08999 * 110.72857 * 216.28393 * 6 5 4 8 8 N 1.46893 * 110.73431 * 92.97466 * 6 5 4 9 9 C 1.47852 * 110.99752 * 300.94043 * 8 6 5 10 10 C 1.54910 * 104.79476 * 213.63788 * 9 8 6 11 11 C 1.55146 * 101.65112 * 37.07109 * 10 9 8 12 12 O 1.42902 * 110.70477 * 82.72816 * 11 10 9 13 13 C 1.50700 * 110.85348 * 205.88992 * 11 10 9 14 14 H 1.08007 * 119.99892 * 20.83516 * 13 11 10 15 15 C 1.37877 * 120.00018 * 200.83463 * 13 11 10 16 16 N 1.31516 * 119.99747 * 173.56134 * 15 13 11 17 17 Si 1.86797 * 120.00153 * 353.55835 * 15 13 11 18 18 H 1.48506 * 109.46871 * 86.34641 * 17 15 13 19 19 H 1.48497 * 109.47420 * 206.34585 * 17 15 13 20 20 H 1.48498 * 109.47011 * 326.34790 * 17 15 13 21 21 C 1.47445 * 110.99945 * 180.10230 * 8 6 5 22 22 C 1.34777 * 124.16222 * 75.00188 * 3 2 1 23 23 O 1.21280 * 126.24246 * 1.17409 * 22 3 2 24 24 H 1.08999 * 109.46976 * 60.00091 * 1 2 3 25 25 H 1.09003 * 109.46523 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46736 * 300.00061 * 1 2 3 27 27 H 1.08999 * 109.46976 * 119.99909 * 2 1 3 28 28 H 1.08999 * 109.47236 * 240.00093 * 2 1 3 29 29 H 1.09003 * 111.01910 * 268.93812 * 5 4 3 30 30 H 1.08998 * 110.81074 * 145.48792 * 5 4 3 31 31 H 1.09002 * 110.37080 * 332.46456 * 9 8 6 32 32 H 1.08992 * 110.37103 * 94.80957 * 9 8 6 33 33 H 1.08999 * 110.99185 * 278.97935 * 10 9 8 34 34 H 1.09003 * 111.02415 * 155.17420 * 10 9 8 35 35 H 0.96708 * 113.99997 * 61.07483 * 12 11 10 36 36 H 0.96997 * 119.99483 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.88569 * 242.66314 * 21 8 6 38 38 H 1.09003 * 109.88720 * 3.68761 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 8 2.5743 2.0272 -1.1290 5 6 2.5193 3.4491 -0.8933 6 6 2.5618 3.5334 0.6499 7 1 1.9329 4.3479 1.0092 8 7 3.9429 3.6927 1.1241 9 6 4.7875 2.5611 0.6856 10 6 5.8049 2.3578 1.8360 11 6 4.9294 2.6479 3.0835 12 8 4.1802 1.4893 3.4555 13 6 5.7771 3.1243 4.2348 14 1 6.7565 3.5398 4.0486 15 6 5.3024 3.0297 5.5258 16 7 6.0876 3.3260 6.5384 17 14 3.5442 2.4807 5.8367 18 1 3.4909 0.9975 5.8902 19 1 3.0721 3.0399 7.1288 20 1 2.6720 2.9680 4.7381 21 6 3.9906 3.7713 2.5957 22 6 1.9985 2.1910 1.0772 23 8 1.6025 1.8997 2.1859 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.5922 3.8737 -1.2786 30 1 3.3833 3.9480 -1.3321 31 1 4.1816 1.6649 0.5520 32 1 5.3061 2.8111 -0.2399 33 1 6.6264 3.0703 1.7612 34 1 6.1788 1.3340 1.8509 35 1 4.7263 0.7270 3.6919 36 1 5.7535 3.2598 7.4466 37 1 4.3820 4.7411 2.9027 38 1 2.9915 3.6277 3.0072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595564348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = -72.120526 kcal Electronic energy + Delta-G solvation = -22965.243594 eV Core-core repulsion = 19616.842050 eV Total energy + Delta-G solvation = -3348.401544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.23476 -39.75763 -38.51669 -36.75949 -35.14426 -34.46403 -32.67725 -30.84431 -30.10736 -29.45282 -26.21869 -25.16930 -23.94716 -22.11830 -21.53508 -21.36472 -19.34216 -18.41534 -18.18060 -17.17422 -17.09062 -16.64182 -16.46108 -16.09613 -15.64339 -15.02357 -14.93467 -14.79379 -14.65841 -14.49785 -13.92708 -13.76730 -13.71180 -13.63113 -13.13867 -12.82436 -12.69356 -12.48188 -12.31432 -12.23502 -12.11855 -12.00912 -11.78868 -11.22490 -11.16595 -10.65386 -10.32953 -9.72887 -9.36873 -8.38539 -6.48496 0.88803 1.32202 1.42028 1.45391 1.71333 2.40071 2.67013 2.95958 3.05341 3.30756 3.52600 3.60537 3.92290 4.04401 4.09141 4.17984 4.25507 4.38654 4.40042 4.54011 4.57969 4.65498 4.68476 4.73447 4.87853 4.96072 5.04167 5.17442 5.21878 5.32918 5.38040 5.54655 5.74350 5.90575 6.04792 6.13277 6.58648 6.91906 6.98617 7.30649 8.74440 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.007815 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.886531 B = 3581.867818 C = 4113.093230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 N -0.486 5.486 4 O -0.154 6.154 5 C 0.046 3.954 6 C 0.011 3.989 7 H 0.129 0.871 8 N -0.493 5.493 9 C 0.042 3.958 10 C -0.139 4.139 11 C 0.203 3.797 12 O -0.560 6.560 13 C -0.541 4.541 14 H 0.047 0.953 15 C 0.034 3.966 16 N -0.934 5.934 17 Si 0.993 3.007 18 H -0.291 1.291 19 H -0.336 1.336 20 H -0.263 1.263 21 C 0.050 3.950 22 C 0.477 3.523 23 O -0.524 6.524 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.372 0.628 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -4.133 -19.403 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.268 5.268 4 O -0.157 6.157 5 C -0.030 4.030 6 C -0.102 4.102 7 H 0.147 0.853 8 N -0.218 5.218 9 C -0.085 4.085 10 C -0.177 4.177 11 C 0.163 3.837 12 O -0.367 6.367 13 C -0.579 4.579 14 H 0.066 0.934 15 C -0.166 4.166 16 N -0.573 5.573 17 Si 0.827 3.173 18 H -0.218 1.218 19 H -0.268 1.268 20 H -0.189 1.189 21 C -0.078 4.078 22 C 0.263 3.737 23 O -0.399 6.399 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.220 0.780 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.950 -3.593 -19.210 21.930 hybrid contribution -0.266 -0.948 1.490 1.786 sum -10.216 -4.541 -17.721 20.952 Atomic orbital electron populations 1.22156 0.94168 1.03969 1.01837 1.21735 0.95093 0.77344 1.04399 1.50551 1.60917 1.12487 1.02807 1.90921 1.80284 1.19549 1.24906 1.24206 1.06890 0.80470 0.91461 1.23682 0.92480 0.95645 0.98421 0.85337 1.64117 1.05653 1.41307 1.10676 1.23207 0.94650 0.91948 0.98687 1.23181 0.98071 1.01779 0.94655 1.20259 0.88267 0.83223 0.91997 1.86263 1.38867 1.23617 1.87958 1.21531 1.02826 1.42433 0.91078 0.93437 1.25663 1.00999 0.93973 0.95943 1.70069 1.37851 1.49866 0.99493 0.85028 0.80771 0.77622 0.73851 1.21805 1.26787 1.18895 1.23138 0.99639 0.99102 0.85915 1.22146 0.78276 0.89510 0.83783 1.90815 1.47939 1.79942 1.21168 0.91223 0.88472 0.94584 0.90709 0.86538 0.86763 0.83859 0.92990 0.88010 0.90967 0.90660 0.78040 0.92559 0.90233 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.13 71.99 0.73 -2.33 16 2 C 0.13 2.87 6.94 86.38 0.60 3.47 16 3 N -0.49 -13.05 2.86 -461.86 -1.32 -14.37 16 4 O -0.15 -3.49 11.31 -38.47 -0.44 -3.92 16 5 C 0.05 0.87 7.24 72.53 0.52 1.39 16 6 C 0.01 0.31 3.10 45.05 0.14 0.45 16 7 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 8 N -0.49 -16.52 5.21 -859.62 -4.48 -21.00 16 9 C 0.04 1.33 5.41 86.77 0.47 1.80 16 10 C -0.14 -5.22 6.23 31.98 0.20 -5.02 16 11 C 0.20 9.32 0.68 -10.36 -0.01 9.31 16 12 O -0.56 -25.87 8.23 -147.02 -1.21 -27.08 16 13 C -0.54 -30.23 8.71 25.60 0.22 -30.01 16 14 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 15 C 0.03 2.02 5.46 84.65 0.46 2.48 16 16 N -0.93 -58.65 13.96 21.45 0.30 -58.35 16 17 Si 0.99 52.72 24.90 68.60 1.71 54.43 16 18 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 19 H -0.34 -18.13 7.11 99.48 0.71 -17.43 16 20 H -0.26 -14.23 5.18 99.48 0.52 -13.71 16 21 C 0.05 2.15 5.23 86.64 0.45 2.60 16 22 C 0.48 16.14 5.88 87.98 0.52 16.66 16 23 O -0.52 -22.70 15.99 -1.07 -0.02 -22.72 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.14 2.17 8.07 -2.39 -0.02 2.16 16 31 H 0.05 1.70 5.07 -2.39 -0.01 1.69 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.78 7.99 -2.39 -0.02 2.76 16 34 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.37 15.53 9.07 -74.05 -0.67 14.86 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.08 3.62 7.82 -2.39 -0.02 3.60 16 38 H 0.05 2.47 4.50 -2.39 -0.01 2.46 16 Total: -1.00 -74.30 298.94 -0.93 -75.23 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.21 Total: 16.97 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 4.31 Total: 0.80 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -5.50 Total: -93.71 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -1.66 Total: -53.72 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 1.71 Total: 54.43 kcal Total: -74.30 -0.93 -75.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595564348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.108 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds