Wall clock time and date at job start Mon Mar 30 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99811 * 2 1 4 4 H 1.08994 * 110.05520 * 28.58340 * 3 2 1 5 5 C 1.53875 * 110.03074 * 267.16794 * 3 2 1 6 6 C 1.54261 * 106.59785 * 240.71560 * 5 3 2 7 7 C 1.54891 * 104.19821 * 336.39015 * 6 5 3 8 8 C 1.54264 * 110.03362 * 150.00285 * 3 2 1 9 9 H 1.09003 * 110.59820 * 24.15903 * 8 3 2 10 10 N 1.46502 * 110.48353 * 261.57448 * 8 3 2 11 11 C 1.46501 * 119.99985 * 303.76603 * 10 8 3 12 12 C 1.34780 * 120.00185 * 123.77312 * 10 8 3 13 13 O 1.21436 * 119.99657 * 3.58082 * 12 10 8 14 14 C 1.48823 * 119.99978 * 183.58203 * 12 10 8 15 15 O 1.21502 * 120.00337 * 354.15531 * 14 12 10 16 16 N 1.34778 * 120.00155 * 174.15399 * 14 12 10 17 17 C 1.36112 * 120.00252 * 180.02562 * 16 14 12 18 18 H 1.08001 * 120.00393 * 359.72456 * 17 16 14 19 19 C 1.39589 * 120.00268 * 179.97438 * 17 16 14 20 20 N 1.31019 * 119.99732 * 359.72327 * 19 17 16 21 21 Si 1.86798 * 120.00449 * 179.72538 * 19 17 16 22 22 H 1.48495 * 109.47097 * 59.99876 * 21 19 17 23 23 H 1.48495 * 109.47453 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46540 * 299.99976 * 21 19 17 25 25 H 1.09003 * 109.46841 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46979 * 299.99609 * 1 2 3 27 27 H 1.08995 * 109.47271 * 60.00518 * 1 2 3 28 28 H 1.08995 * 110.03248 * 121.42785 * 5 3 2 29 29 H 1.09007 * 110.07499 * 0.02562 * 5 3 2 30 30 H 1.09000 * 110.48714 * 217.70917 * 6 5 3 31 31 H 1.09000 * 110.48657 * 95.07141 * 6 5 3 32 32 H 1.08997 * 110.75218 * 279.62902 * 7 6 5 33 33 H 1.08996 * 110.91613 * 156.33078 * 7 6 5 34 34 H 1.08994 * 109.47538 * 263.97490 * 11 10 8 35 35 H 1.09004 * 109.46875 * 23.97294 * 11 10 8 36 36 H 1.09000 * 109.46962 * 143.97093 * 11 10 8 37 37 H 0.97000 * 119.99890 * 359.97438 * 16 14 12 38 38 H 0.96999 * 119.99867 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0126 0.4898 5 6 2.2898 1.7580 -1.4439 6 6 3.8115 1.9894 -1.5463 7 6 4.2539 2.2591 -0.0866 8 6 3.3718 1.2778 0.7246 9 1 3.7976 0.2746 0.7025 10 7 3.2266 1.7415 2.1067 11 6 2.6499 3.0602 2.3801 12 6 3.6236 0.9550 3.1266 13 8 4.1611 -0.1098 2.8986 14 6 3.4033 1.3915 4.5323 15 8 2.9635 2.5006 4.7622 16 7 3.6917 0.5566 5.5503 17 6 3.4897 0.9556 6.8358 18 1 3.1026 1.9429 7.0404 19 6 3.7878 0.0907 7.8901 20 7 4.2569 -1.1072 7.6420 21 14 3.5179 0.6410 9.6547 22 1 2.0843 0.9716 9.8563 23 1 3.9090 -0.4527 10.5797 24 1 4.3465 1.8422 9.9307 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.7561 2.6847 -1.6548 29 1 1.9820 0.9824 -2.1453 30 1 4.0245 2.8537 -2.1753 31 1 4.3071 1.1007 -1.9371 32 1 4.0445 3.2907 0.1961 33 1 5.3109 2.0301 0.0483 34 1 3.4513 3.7870 2.5121 35 1 2.0200 3.3619 1.5432 36 1 2.0491 3.0128 3.2884 37 1 4.0424 -0.3289 5.3667 38 1 4.4638 -1.7084 8.3746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687458650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:42 Heat of formation + Delta-G solvation = -108.987815 kcal Electronic energy + Delta-G solvation = -21467.532125 eV Core-core repulsion = 18117.531895 eV Total energy + Delta-G solvation = -3350.000230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12563 -38.73550 -37.10780 -36.12888 -34.73969 -33.63323 -31.39553 -28.39183 -28.30020 -26.51650 -26.13025 -25.45541 -22.80881 -20.66720 -20.04271 -18.96543 -18.13115 -17.06828 -16.70578 -15.99099 -15.49684 -15.28659 -14.98939 -14.85336 -14.40791 -13.95473 -13.80220 -13.41856 -12.96984 -12.89303 -12.44665 -12.29353 -12.09244 -11.88454 -11.64132 -11.55313 -11.47017 -11.23169 -11.16295 -10.69366 -10.55819 -10.52653 -10.40018 -10.11738 -9.70784 -9.65331 -8.31708 -8.20370 -7.92496 -6.66473 -3.99043 2.46578 3.12477 3.17081 3.17595 3.26359 3.79726 4.04334 4.23904 4.49934 4.59352 4.87225 4.92062 5.13764 5.18503 5.24246 5.30264 5.41850 5.42499 5.50893 5.55052 5.58706 5.67757 5.77832 5.88784 5.90943 6.00812 6.07120 6.13617 6.26922 6.56867 6.95730 7.22547 7.31214 7.67193 7.80050 8.33128 8.61917 8.96268 9.32406 9.85604 10.48217 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.004388 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.845573 B = 6378.951685 C = 6559.865890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.070 3.930 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.136 3.864 9 H 0.115 0.885 10 N -0.594 5.594 11 C 0.071 3.929 12 C 0.515 3.485 13 O -0.543 6.543 14 C 0.395 3.605 15 O -0.590 6.590 16 N -0.497 5.497 17 C -0.307 4.307 18 H 0.112 0.888 19 C 0.032 3.968 20 N -0.868 5.868 21 Si 0.940 3.060 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.405 0.595 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 5.146 -14.934 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.011 3.989 4 H 0.090 0.910 5 C -0.182 4.182 6 C -0.156 4.156 7 C -0.170 4.170 8 C 0.032 3.968 9 H 0.133 0.867 10 N -0.327 5.327 11 C -0.071 4.071 12 C 0.301 3.699 13 O -0.420 6.420 14 C 0.180 3.820 15 O -0.480 6.480 16 N -0.131 5.131 17 C -0.437 4.437 18 H 0.130 0.870 19 C -0.175 4.175 20 N -0.506 5.506 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.194 1.194 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.240 0.760 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.228 4.935 -14.760 16.128 hybrid contribution -0.157 -0.042 0.633 0.653 sum -4.385 4.894 -14.127 15.581 Atomic orbital electron populations 1.22769 0.81382 1.02671 0.99703 1.87983 1.19405 1.27291 1.94878 1.23240 0.95431 0.85135 0.95071 0.91023 1.22611 0.97220 1.01508 0.96819 1.22238 0.95092 1.01821 0.96461 1.22785 1.00050 0.99726 0.94444 1.21940 0.93655 1.00631 0.80572 0.86664 1.47560 1.62241 1.18366 1.04554 1.22331 0.99148 0.82662 1.02969 1.20714 0.78129 0.83662 0.87372 1.90677 1.42572 1.23081 1.85636 1.18898 0.90588 0.87591 0.84968 1.90446 1.52617 1.21231 1.83704 1.41569 1.50582 1.15802 1.05142 1.19827 1.41133 1.02098 0.80661 0.86994 1.25591 0.95762 0.94857 1.01336 1.69483 1.39694 1.06715 1.34711 0.85779 0.79343 0.78383 0.79980 1.19393 1.20597 1.19386 0.89736 0.93968 0.94374 0.91341 0.90581 0.91276 0.91080 0.90661 0.90560 0.92928 0.93354 0.86540 0.75997 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 16 2 O -0.38 -5.66 10.26 -35.23 -0.36 -6.02 16 3 C 0.07 0.94 2.90 -25.61 -0.07 0.86 16 4 H 0.07 0.93 5.83 -51.93 -0.30 0.63 16 5 C -0.14 -1.46 6.61 -25.62 -0.17 -1.63 16 6 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 7 C -0.13 -1.60 6.45 -24.74 -0.16 -1.76 16 8 C 0.14 2.13 2.99 -66.27 -0.20 1.93 16 9 H 0.12 2.10 6.92 -51.93 -0.36 1.74 16 10 N -0.59 -10.94 2.86 -172.78 -0.49 -11.44 16 11 C 0.07 1.15 8.21 59.85 0.49 1.64 16 12 C 0.51 11.74 7.71 -11.88 -0.09 11.65 16 13 O -0.54 -13.39 15.85 5.42 0.09 -13.30 16 14 C 0.39 10.00 7.70 -11.88 -0.09 9.91 16 15 O -0.59 -15.25 12.69 5.36 0.07 -15.19 16 16 N -0.50 -13.41 5.24 -11.59 -0.06 -13.47 16 17 C -0.31 -8.42 9.67 -15.15 -0.15 -8.56 16 18 H 0.11 3.10 7.15 -52.49 -0.38 2.73 16 19 C 0.03 0.82 5.51 -17.39 -0.10 0.73 16 20 N -0.87 -23.37 13.03 55.53 0.72 -22.65 16 21 Si 0.94 20.03 29.56 -169.99 -5.02 15.01 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.76 7.96 -51.92 -0.41 0.35 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.87 7.27 -51.93 -0.38 0.49 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.62 6.33 -51.93 -0.33 0.29 16 36 H 0.12 2.22 5.35 -51.94 -0.28 1.94 16 37 H 0.40 11.09 7.36 -40.82 -0.30 10.79 16 38 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -30.60 313.82 -5.19 -35.80 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.25 Total: 11.65 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 0.39 Total: 14.89 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.17 Total: -47.55 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.21 Total: -34.52 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.60 -5.19 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687458650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.192 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds