Wall clock time and date at job start Mon Mar 30 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99811 * 2 1 4 4 H 1.08994 * 110.05520 * 28.58340 * 3 2 1 5 5 C 1.53875 * 110.03074 * 267.16794 * 3 2 1 6 6 C 1.54261 * 106.59785 * 240.71560 * 5 3 2 7 7 C 1.54891 * 104.19821 * 336.39015 * 6 5 3 8 8 C 1.54264 * 110.03362 * 150.00285 * 3 2 1 9 9 H 1.09003 * 110.59820 * 24.15903 * 8 3 2 10 10 N 1.46502 * 110.48353 * 261.57448 * 8 3 2 11 11 C 1.46501 * 119.99985 * 303.76603 * 10 8 3 12 12 C 1.34780 * 120.00185 * 123.77312 * 10 8 3 13 13 O 1.21436 * 119.99657 * 3.58082 * 12 10 8 14 14 C 1.48823 * 119.99978 * 183.58203 * 12 10 8 15 15 O 1.21502 * 120.00337 * 354.15531 * 14 12 10 16 16 N 1.34778 * 120.00155 * 174.15399 * 14 12 10 17 17 C 1.36112 * 120.00252 * 180.02562 * 16 14 12 18 18 H 1.08001 * 120.00393 * 359.72456 * 17 16 14 19 19 C 1.39589 * 120.00268 * 179.97438 * 17 16 14 20 20 N 1.31019 * 119.99732 * 359.72327 * 19 17 16 21 21 Si 1.86798 * 120.00449 * 179.72538 * 19 17 16 22 22 H 1.48495 * 109.47097 * 59.99876 * 21 19 17 23 23 H 1.48495 * 109.47453 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46540 * 299.99976 * 21 19 17 25 25 H 1.09003 * 109.46841 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46979 * 299.99609 * 1 2 3 27 27 H 1.08995 * 109.47271 * 60.00518 * 1 2 3 28 28 H 1.08995 * 110.03248 * 121.42785 * 5 3 2 29 29 H 1.09007 * 110.07499 * 0.02562 * 5 3 2 30 30 H 1.09000 * 110.48714 * 217.70917 * 6 5 3 31 31 H 1.09000 * 110.48657 * 95.07141 * 6 5 3 32 32 H 1.08997 * 110.75218 * 279.62902 * 7 6 5 33 33 H 1.08996 * 110.91613 * 156.33078 * 7 6 5 34 34 H 1.08994 * 109.47538 * 263.97490 * 11 10 8 35 35 H 1.09004 * 109.46875 * 23.97294 * 11 10 8 36 36 H 1.09000 * 109.46962 * 143.97093 * 11 10 8 37 37 H 0.97000 * 119.99890 * 359.97438 * 16 14 12 38 38 H 0.96999 * 119.99867 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0126 0.4898 5 6 2.2898 1.7580 -1.4439 6 6 3.8115 1.9894 -1.5463 7 6 4.2539 2.2591 -0.0866 8 6 3.3718 1.2778 0.7246 9 1 3.7976 0.2746 0.7025 10 7 3.2266 1.7415 2.1067 11 6 2.6499 3.0602 2.3801 12 6 3.6236 0.9550 3.1266 13 8 4.1611 -0.1098 2.8986 14 6 3.4033 1.3915 4.5323 15 8 2.9635 2.5006 4.7622 16 7 3.6917 0.5566 5.5503 17 6 3.4897 0.9556 6.8358 18 1 3.1026 1.9429 7.0404 19 6 3.7878 0.0907 7.8901 20 7 4.2569 -1.1072 7.6420 21 14 3.5179 0.6410 9.6547 22 1 2.0843 0.9716 9.8563 23 1 3.9090 -0.4527 10.5797 24 1 4.3465 1.8422 9.9307 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.7561 2.6847 -1.6548 29 1 1.9820 0.9824 -2.1453 30 1 4.0245 2.8537 -2.1753 31 1 4.3071 1.1007 -1.9371 32 1 4.0445 3.2907 0.1961 33 1 5.3109 2.0301 0.0483 34 1 3.4513 3.7870 2.5121 35 1 2.0200 3.3619 1.5432 36 1 2.0491 3.0128 3.2884 37 1 4.0424 -0.3289 5.3667 38 1 4.4638 -1.7084 8.3746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687458650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:42 Heat of formation + Delta-G solvation = -131.157632 kcal Electronic energy + Delta-G solvation = -21468.493480 eV Core-core repulsion = 18117.531895 eV Total energy + Delta-G solvation = -3350.961585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70397 -40.16132 -38.91326 -37.42903 -36.46516 -35.22589 -33.43435 -29.53795 -29.25117 -28.20225 -27.37297 -26.96130 -24.51294 -21.62475 -21.41631 -20.66315 -20.01250 -18.43649 -18.37027 -17.39399 -17.11856 -16.79019 -16.54115 -16.15225 -15.81694 -15.54481 -15.01937 -14.94552 -14.56170 -14.20919 -13.94793 -13.70773 -13.46146 -13.31826 -13.04339 -12.91573 -12.62027 -12.55897 -12.38626 -12.12513 -12.09894 -12.05450 -11.65095 -11.59215 -11.42808 -10.69671 -10.27848 -9.96818 -9.63365 -8.65180 -6.10149 0.58611 1.40257 1.48992 1.53166 1.67933 2.26898 2.33917 2.79433 3.07267 3.14820 3.51479 3.65750 3.92358 3.95772 4.13043 4.31786 4.34061 4.40856 4.44767 4.51658 4.53737 4.67721 4.75537 4.80741 4.89898 4.97670 5.11879 5.15857 5.19453 5.26519 5.37160 5.50766 5.68695 6.05451 6.26332 6.33116 6.76793 6.96624 7.27593 7.79678 8.50587 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.004388 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.845573 B = 6378.951685 C = 6559.865890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.069 3.931 4 H 0.077 0.923 5 C -0.134 4.134 6 C -0.110 4.110 7 C -0.126 4.126 8 C 0.123 3.877 9 H 0.083 0.917 10 N -0.580 5.580 11 C 0.071 3.929 12 C 0.511 3.489 13 O -0.571 6.571 14 C 0.392 3.608 15 O -0.598 6.598 16 N -0.513 5.513 17 C -0.344 4.344 18 H 0.102 0.898 19 C -0.006 4.006 20 N -0.899 5.899 21 Si 1.012 2.988 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.263 1.263 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.398 0.602 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 6.749 -16.303 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C 0.011 3.989 4 H 0.095 0.905 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.164 4.164 8 C 0.020 3.980 9 H 0.101 0.899 10 N -0.311 5.311 11 C -0.070 4.070 12 C 0.296 3.704 13 O -0.451 6.451 14 C 0.177 3.823 15 O -0.488 6.488 16 N -0.146 5.146 17 C -0.474 4.474 18 H 0.120 0.880 19 C -0.210 4.210 20 N -0.536 5.536 21 Si 0.832 3.168 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.188 1.188 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.232 0.768 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.037 6.572 -16.176 18.172 hybrid contribution 0.049 -0.519 0.938 1.073 sum -4.988 6.053 -15.238 17.138 Atomic orbital electron populations 1.22934 0.79730 1.03582 1.00700 1.87945 1.21344 1.28463 1.95170 1.23325 0.93749 0.84821 0.97012 0.90466 1.22584 0.97660 1.02766 0.94183 1.22244 0.94690 1.03040 0.94834 1.22786 0.98919 0.99211 0.95494 1.22290 0.96385 1.00082 0.79258 0.89927 1.47669 1.60189 1.18294 1.04984 1.22340 0.99526 0.81509 1.03621 1.20318 0.78811 0.83961 0.87289 1.90658 1.44302 1.24315 1.85842 1.19461 0.89501 0.87302 0.86019 1.90443 1.52471 1.21390 1.84457 1.41683 1.51493 1.15782 1.05658 1.19968 1.43424 1.02437 0.81532 0.87991 1.26577 0.94501 0.94535 1.05391 1.69563 1.39975 1.07699 1.36389 0.84729 0.79472 0.78302 0.74263 1.18718 1.19270 1.18777 0.89079 0.94585 0.91628 0.88602 0.90157 0.88356 0.91305 0.89269 0.91261 0.92198 0.88925 0.89312 0.76777 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.85 113.37 1.23 1.80 16 2 O -0.41 -11.94 10.26 -148.98 -1.53 -13.47 16 3 C 0.07 1.71 2.90 31.32 0.09 1.80 16 4 H 0.08 1.78 5.83 -2.39 -0.01 1.77 16 5 C -0.13 -2.23 6.61 31.32 0.21 -2.02 16 6 C -0.11 -1.78 6.83 31.67 0.22 -1.56 16 7 C -0.13 -2.79 6.45 31.88 0.21 -2.58 16 8 C 0.12 3.76 2.99 46.06 0.14 3.90 16 9 H 0.08 3.10 6.92 -2.39 -0.02 3.08 16 10 N -0.58 -21.29 2.86 -818.88 -2.35 -23.63 16 11 C 0.07 2.22 8.21 127.77 1.05 3.27 16 12 C 0.51 24.06 7.71 87.08 0.67 24.73 16 13 O -0.57 -29.48 15.85 -3.52 -0.06 -29.54 16 14 C 0.39 20.57 7.70 87.08 0.67 21.24 16 15 O -0.60 -31.64 12.69 -3.72 -0.05 -31.69 16 16 N -0.51 -28.86 5.24 -308.88 -1.62 -30.48 16 17 C -0.34 -19.49 9.67 84.36 0.82 -18.67 16 18 H 0.10 5.84 7.15 -2.91 -0.02 5.82 16 19 C -0.01 -0.32 5.51 85.14 0.47 0.15 16 20 N -0.90 -49.25 13.03 21.77 0.28 -48.97 16 21 Si 1.01 40.98 29.56 68.60 2.03 43.01 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.32 7.96 -2.38 -0.02 1.30 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.75 7.27 -2.39 -0.02 1.73 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.07 6.33 -2.38 -0.02 2.06 16 36 H 0.09 3.36 5.35 -2.56 -0.01 3.34 16 37 H 0.40 23.00 7.36 -92.71 -0.68 22.31 16 38 H 0.29 14.50 8.30 -92.71 -0.77 13.74 16 Total: -1.00 -68.97 313.82 2.88 -66.09 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 0.40 Total: 36.62 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: 5.76 Total: 32.05 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.68 Total: -103.08 kcal Atomic # 8 Polarization: -73.06 SS G_CDS: -1.63 Total: -74.70 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -68.97 2.88 -66.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687458650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.063 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds