Wall clock time and date at job start Mon Mar 30 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47069 * 304.99600 * 12 11 10 14 14 N 1.46898 * 109.47357 * 64.99939 * 12 11 10 15 15 C 1.50703 * 109.46801 * 184.99876 * 12 11 10 16 16 O 1.21275 * 120.00353 * 259.99446 * 15 12 11 17 17 N 1.34781 * 119.99971 * 80.00207 * 15 12 11 18 18 C 1.46497 * 120.00245 * 179.97438 * 17 15 12 19 19 C 1.52995 * 109.47234 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.47272 * 305.00154 * 19 18 17 21 21 O 1.42901 * 109.47080 * 65.00206 * 19 18 17 22 22 C 1.53004 * 109.47152 * 185.00260 * 19 18 17 23 23 C 1.53009 * 117.49704 * 248.74912 * 22 19 18 24 24 C 1.52997 * 117.49905 * 180.09062 * 22 19 18 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.00899 * 111.00057 * 60.00247 * 14 12 11 33 33 H 1.00902 * 110.99515 * 183.95384 * 14 12 11 34 34 H 0.97000 * 119.99714 * 359.97438 * 17 15 12 35 35 H 1.09004 * 109.46914 * 300.00062 * 18 17 15 36 36 H 1.09009 * 109.46627 * 59.99476 * 18 17 15 37 37 H 0.96701 * 114.00103 * 60.00268 * 21 19 18 38 38 H 1.09001 * 115.55309 * 34.41414 * 22 19 18 39 39 H 1.09000 * 117.49439 * 359.97438 * 23 22 19 40 40 H 1.08994 * 117.49483 * 145.01794 * 23 22 19 41 41 H 1.09002 * 117.49576 * 214.97569 * 24 22 19 42 42 H 1.08995 * 117.50307 * 359.97245 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1588 -6.0435 -0.8401 14 7 3.2378 -6.1411 1.2570 15 6 1.7253 -7.4516 -0.1213 16 8 1.5130 -8.1249 0.8648 17 7 1.2910 -7.8677 -1.3275 18 6 0.5630 -9.1333 -1.4474 19 6 0.1863 -9.3683 -2.9115 20 1 -0.3707 -8.5093 -3.2857 21 8 1.3740 -9.5405 -3.6873 22 6 -0.6803 -10.6246 -3.0199 23 6 -0.0707 -11.8458 -3.7115 24 6 -1.1613 -11.0329 -4.4137 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 2.6255 -6.2386 2.0531 33 1 3.9455 -6.8603 1.2550 34 1 1.4606 -7.3291 -2.1163 35 1 1.1948 -9.9503 -1.0988 36 1 -0.3424 -9.0904 -0.8419 37 1 1.9201 -10.2886 -3.4096 38 1 -1.3539 -10.8048 -2.1822 39 1 0.9475 -11.7539 -4.0897 40 1 -0.3436 -12.8292 -3.3290 41 1 -2.1513 -11.4821 -4.4929 42 1 -0.8609 -10.4064 -5.2535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691593276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:22 Heat of formation + Delta-G solvation = -88.594897 kcal Electronic energy + Delta-G solvation = -20352.487726 eV Core-core repulsion = 17139.204894 eV Total energy + Delta-G solvation = -3213.282832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16292 -39.11721 -35.89546 -35.56062 -34.48881 -33.31111 -31.32541 -29.91083 -27.81922 -25.40387 -23.75189 -22.85411 -22.08938 -21.18870 -20.02076 -19.95786 -17.55732 -17.24943 -16.51981 -16.34889 -16.14951 -15.62235 -15.45468 -14.57923 -14.40390 -14.22817 -14.15420 -13.76910 -13.08827 -12.91583 -12.71522 -12.33594 -11.95603 -11.76273 -11.69371 -11.45105 -11.11821 -11.01364 -10.73815 -10.70056 -10.61256 -10.40576 -10.37098 -10.18291 -9.58099 -9.25929 -9.18968 -9.02899 -8.54814 -8.27276 -5.93261 -3.94851 2.57657 3.00496 3.28173 3.38120 3.41932 3.45034 3.90338 4.16806 4.35341 4.46540 4.51499 4.60948 4.69911 4.78359 4.92525 4.93304 5.20824 5.21591 5.38539 5.42308 5.43918 5.46128 5.59936 5.64299 5.71438 5.95910 6.14490 6.25211 6.46864 6.84713 7.03576 7.10920 7.13076 7.27044 7.40839 7.53607 7.76799 7.92749 8.08439 8.12818 8.51783 9.12637 9.68737 11.18203 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.002953 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.821680 B = 9480.397451 C =10150.424380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.078 3.922 13 H 0.101 0.899 14 N -0.811 5.811 15 C 0.482 3.518 16 O -0.553 6.553 17 N -0.725 5.725 18 C 0.090 3.910 19 C 0.125 3.875 20 H 0.112 0.888 21 O -0.555 6.555 22 C -0.192 4.192 23 C -0.177 4.177 24 C -0.167 4.167 25 H 0.260 0.740 26 H 0.012 0.988 27 H 0.014 0.986 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.350 0.650 33 H 0.337 0.663 34 H 0.407 0.593 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.375 0.625 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -23.870 -7.348 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.038 4.038 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.268 3.732 16 O -0.431 6.431 17 N -0.378 5.378 18 C -0.034 4.034 19 C 0.066 3.934 20 H 0.130 0.870 21 O -0.361 6.361 22 C -0.211 4.211 23 C -0.214 4.214 24 C -0.204 4.204 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.224 0.776 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.225 -22.965 -7.135 24.049 hybrid contribution 0.117 -0.407 0.076 0.430 sum 0.341 -23.371 -7.059 24.416 Atomic orbital electron populations 1.69961 1.06051 1.26561 1.51213 1.25034 0.94836 0.99213 0.95506 0.86671 0.79571 0.83218 0.78608 1.20294 1.21397 1.20241 1.21249 0.93047 0.91121 1.50078 0.92707 1.19116 0.94109 0.91629 0.96908 1.21537 0.98771 0.92288 1.01172 1.21650 0.96533 0.94048 1.01928 1.21764 0.95874 0.90826 0.95320 0.88139 1.59044 1.17351 1.54224 1.03322 1.22585 0.79105 0.88925 0.82616 1.90663 1.57718 1.57578 1.37124 1.46058 1.58034 1.23217 1.10471 1.21984 0.97573 0.87114 0.96764 1.21666 0.85428 0.96753 0.89563 0.86994 1.86623 1.35373 1.54686 1.59441 1.23014 1.03993 0.96395 0.97737 1.22981 0.99100 0.95204 1.04148 1.22937 0.98922 1.03375 0.95123 0.93068 0.96973 0.96798 0.91842 0.93648 0.91916 0.91969 0.83607 0.85068 0.75795 0.91352 0.90640 0.77587 0.86850 0.88186 0.88671 0.88709 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.10 -2.06 5.04 -26.74 -0.13 -2.19 16 11 C -0.10 -1.72 4.84 -26.73 -0.13 -1.85 16 12 C 0.08 1.07 3.15 -68.86 -0.22 0.86 16 13 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 14 N -0.81 -11.27 8.44 -5.65 -0.05 -11.32 16 15 C 0.48 6.56 7.07 -10.98 -0.08 6.48 16 16 O -0.55 -9.19 16.25 5.56 0.09 -9.10 16 17 N -0.72 -7.71 5.50 -60.29 -0.33 -8.04 16 18 C 0.09 0.82 5.29 -4.05 -0.02 0.80 16 19 C 0.13 0.91 3.36 -26.73 -0.09 0.82 16 20 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 21 O -0.55 -4.19 12.44 -35.23 -0.44 -4.63 16 22 C -0.19 -1.23 5.71 -90.61 -0.52 -1.74 16 23 C -0.18 -0.99 9.74 -26.69 -0.26 -1.25 16 24 C -0.17 -1.04 10.19 -26.69 -0.27 -1.31 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.35 5.06 8.58 -39.29 -0.34 4.72 16 33 H 0.34 4.06 9.06 -39.29 -0.36 3.70 16 34 H 0.41 3.81 8.47 -40.82 -0.35 3.46 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.38 1.89 7.56 45.56 0.34 2.24 16 38 H 0.11 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.10 0.50 6.37 -51.93 -0.33 0.17 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -33.44 350.38 -8.46 -41.90 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.46 Total: 8.36 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.27 Total: -12.74 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.36 Total: -46.08 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.35 Total: -13.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.44 -8.46 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.690 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds