Wall clock time and date at job start Mon Mar 30 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47069 * 304.99600 * 12 11 10 14 14 N 1.46898 * 109.47357 * 64.99939 * 12 11 10 15 15 C 1.50703 * 109.46801 * 184.99876 * 12 11 10 16 16 O 1.21275 * 120.00353 * 259.99446 * 15 12 11 17 17 N 1.34781 * 119.99971 * 80.00207 * 15 12 11 18 18 C 1.46497 * 120.00245 * 179.97438 * 17 15 12 19 19 C 1.52995 * 109.47234 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.47409 * 60.00423 * 19 18 17 21 21 O 1.42896 * 109.47385 * 300.00026 * 19 18 17 22 22 C 1.53002 * 109.46901 * 179.97438 * 19 18 17 23 23 C 1.53001 * 117.50034 * 248.74669 * 22 19 18 24 24 C 1.53004 * 117.49874 * 180.08612 * 22 19 18 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.00901 * 110.99892 * 296.04699 * 14 12 11 33 33 H 1.00899 * 111.00057 * 60.00247 * 14 12 11 34 34 H 0.97000 * 119.99714 * 359.97438 * 17 15 12 35 35 H 1.09004 * 109.46914 * 300.00062 * 18 17 15 36 36 H 1.09009 * 109.46627 * 59.99476 * 18 17 15 37 37 H 0.96706 * 114.00275 * 299.99848 * 21 19 18 38 38 H 1.08998 * 115.55304 * 34.42368 * 22 19 18 39 39 H 1.09005 * 117.49356 * 0.02562 * 23 22 19 40 40 H 1.08999 * 117.50019 * 145.02371 * 23 22 19 41 41 H 1.08993 * 117.50254 * 214.98222 * 24 22 19 42 42 H 1.09000 * 117.49960 * 0.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1588 -6.0435 -0.8401 14 7 3.2378 -6.1411 1.2570 15 6 1.7253 -7.4516 -0.1213 16 8 1.5130 -8.1249 0.8648 17 7 1.2910 -7.8677 -1.3275 18 6 0.5630 -9.1333 -1.4474 19 6 0.1863 -9.3683 -2.9115 20 1 1.0915 -9.4111 -3.5173 21 8 -0.6421 -8.2972 -3.3681 22 6 -0.5735 -10.6904 -3.0368 23 6 0.1261 -11.8412 -3.7628 24 6 -1.0387 -11.1083 -4.4331 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.7994 -5.3063 1.3329 33 1 2.6255 -6.2386 2.0531 34 1 1.4606 -7.3291 -2.1163 35 1 1.1948 -9.9503 -1.0988 36 1 -0.3424 -9.0904 -0.8419 37 1 -1.4673 -8.1997 -2.8733 38 1 -1.2176 -10.9441 -2.1949 39 1 1.1278 -11.6565 -4.1509 40 1 -0.0581 -12.8520 -3.3988 41 1 -1.9887 -11.6372 -4.5098 42 1 -0.8032 -10.4416 -5.2626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691593277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:25 Heat of formation + Delta-G solvation = -89.575683 kcal Electronic energy + Delta-G solvation = -20369.987597 eV Core-core repulsion = 17156.662235 eV Total energy + Delta-G solvation = -3213.325362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98788 -38.81735 -36.16357 -35.83325 -34.34559 -33.34567 -31.23224 -29.72808 -27.72788 -25.52282 -23.62831 -22.74920 -22.19064 -21.46218 -20.20908 -19.93822 -17.48368 -17.13530 -16.53964 -16.32176 -15.73863 -15.43247 -14.90381 -14.68021 -14.47300 -14.39034 -14.21487 -13.62166 -13.22509 -13.17875 -12.61925 -12.37516 -11.98500 -11.94209 -11.80792 -11.44416 -11.20760 -10.99570 -10.82128 -10.71724 -10.65151 -10.57092 -10.36969 -9.81021 -9.73774 -9.37831 -9.14839 -9.13228 -8.46993 -8.37264 -6.02773 -4.05695 2.74240 2.99611 3.30011 3.31482 3.36467 3.39626 4.10722 4.13556 4.39205 4.43346 4.57173 4.65622 4.81420 4.87134 4.92920 4.97678 5.24631 5.25154 5.33088 5.34563 5.44453 5.50366 5.56353 5.70476 5.78549 5.79530 5.98283 6.26922 6.34392 6.58423 6.74616 7.02921 7.17618 7.28135 7.52110 7.61660 7.63163 7.76073 7.96483 8.28841 8.38423 9.01478 9.58783 11.08483 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.003036 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.359730 B = 9221.547334 C =10036.382462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.146 4.146 12 C 0.076 3.924 13 H 0.099 0.901 14 N -0.831 5.831 15 C 0.524 3.476 16 O -0.538 6.538 17 N -0.729 5.729 18 C 0.093 3.907 19 C 0.127 3.873 20 H 0.105 0.895 21 O -0.553 6.553 22 C -0.194 4.194 23 C -0.173 4.173 24 C -0.163 4.163 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.351 0.649 33 H 0.349 0.651 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.380 0.620 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -21.578 -7.292 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.186 4.186 12 C -0.040 4.040 13 H 0.117 0.883 14 N -0.363 5.363 15 C 0.311 3.689 16 O -0.413 6.413 17 N -0.382 5.382 18 C -0.032 4.032 19 C 0.067 3.933 20 H 0.122 0.878 21 O -0.359 6.359 22 C -0.213 4.213 23 C -0.210 4.210 24 C -0.200 4.200 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.233 -22.539 -7.258 23.680 hybrid contribution -0.599 1.919 0.258 2.027 sum -0.366 -20.620 -6.999 21.779 Atomic orbital electron populations 1.69966 1.06080 1.26639 1.50780 1.25037 0.94853 0.99314 0.95295 0.86593 0.79845 0.83452 0.78113 1.20645 1.21215 1.19865 1.21248 0.93009 0.91083 1.50677 0.92688 1.19078 0.93939 0.91283 0.97217 1.21649 0.99134 0.93514 1.00341 1.22401 0.98318 0.95080 1.02801 1.21429 0.95516 0.91331 0.95674 0.88313 1.58692 1.28233 1.46048 1.03300 1.20752 0.78446 0.87162 0.82569 1.90652 1.56737 1.56843 1.37107 1.45864 1.58570 1.23506 1.10294 1.21957 0.97442 0.87137 0.96648 1.21685 0.93310 0.84682 0.93586 0.87771 1.86610 1.35624 1.51996 1.61626 1.22959 1.04698 0.96315 0.97354 1.22990 0.97703 0.96494 1.03822 1.22881 0.98799 1.03114 0.95244 0.92977 0.96600 0.96723 0.93366 0.93031 0.91472 0.91843 0.83353 0.83771 0.75924 0.90619 0.91310 0.77248 0.87280 0.88481 0.88523 0.88653 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.09 4.92 -26.74 -0.13 -2.23 16 11 C -0.15 -2.36 4.84 -26.73 -0.13 -2.49 16 12 C 0.08 1.07 3.21 -68.86 -0.22 0.85 16 13 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 14 N -0.83 -11.93 8.94 -5.65 -0.05 -11.98 16 15 C 0.52 7.63 7.08 -10.98 -0.08 7.55 16 16 O -0.54 -9.60 16.25 5.56 0.09 -9.51 16 17 N -0.73 -8.17 5.45 -60.29 -0.33 -8.50 16 18 C 0.09 0.88 5.32 -4.05 -0.02 0.86 16 19 C 0.13 0.96 3.25 -26.73 -0.09 0.88 16 20 H 0.10 0.78 7.90 -51.93 -0.41 0.37 16 21 O -0.55 -4.81 12.99 -35.23 -0.46 -5.27 16 22 C -0.19 -1.28 5.36 -90.62 -0.49 -1.76 16 23 C -0.17 -1.03 10.18 -26.69 -0.27 -1.31 16 24 C -0.16 -1.03 10.16 -26.69 -0.27 -1.30 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.35 4.73 7.55 -39.29 -0.30 4.43 16 33 H 0.35 5.18 8.58 -39.29 -0.34 4.85 16 34 H 0.41 4.00 8.35 -40.82 -0.34 3.66 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.38 2.42 9.05 45.56 0.41 2.83 16 38 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -33.09 351.70 -8.34 -41.42 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.36 Total: 10.11 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.25 Total: -11.96 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.36 Total: -46.63 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.37 Total: -14.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.09 -8.34 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.153 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds