Wall clock time and date at job start Mon Mar 30 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47069 * 304.99600 * 12 11 10 14 14 N 1.46898 * 109.47357 * 64.99939 * 12 11 10 15 15 C 1.50703 * 109.46801 * 184.99876 * 12 11 10 16 16 O 1.21275 * 120.00353 * 259.99446 * 15 12 11 17 17 N 1.34781 * 119.99971 * 80.00207 * 15 12 11 18 18 C 1.46497 * 120.00245 * 179.97438 * 17 15 12 19 19 C 1.52995 * 109.47234 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.47409 * 60.00423 * 19 18 17 21 21 O 1.42896 * 109.47385 * 300.00026 * 19 18 17 22 22 C 1.53002 * 109.46901 * 179.97438 * 19 18 17 23 23 C 1.53001 * 117.50034 * 248.74669 * 22 19 18 24 24 C 1.53004 * 117.49874 * 180.08612 * 22 19 18 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.00901 * 110.99892 * 296.04699 * 14 12 11 33 33 H 1.00899 * 111.00057 * 60.00247 * 14 12 11 34 34 H 0.97000 * 119.99714 * 359.97438 * 17 15 12 35 35 H 1.09004 * 109.46914 * 300.00062 * 18 17 15 36 36 H 1.09009 * 109.46627 * 59.99476 * 18 17 15 37 37 H 0.96706 * 114.00275 * 299.99848 * 21 19 18 38 38 H 1.08998 * 115.55304 * 34.42368 * 22 19 18 39 39 H 1.09005 * 117.49356 * 0.02562 * 23 22 19 40 40 H 1.08999 * 117.50019 * 145.02371 * 23 22 19 41 41 H 1.08993 * 117.50254 * 214.98222 * 24 22 19 42 42 H 1.09000 * 117.49960 * 0.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1588 -6.0435 -0.8401 14 7 3.2378 -6.1411 1.2570 15 6 1.7253 -7.4516 -0.1213 16 8 1.5130 -8.1249 0.8648 17 7 1.2910 -7.8677 -1.3275 18 6 0.5630 -9.1333 -1.4474 19 6 0.1863 -9.3683 -2.9115 20 1 1.0915 -9.4111 -3.5173 21 8 -0.6421 -8.2972 -3.3681 22 6 -0.5735 -10.6904 -3.0368 23 6 0.1261 -11.8412 -3.7628 24 6 -1.0387 -11.1083 -4.4331 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.7994 -5.3063 1.3329 33 1 2.6255 -6.2386 2.0531 34 1 1.4606 -7.3291 -2.1163 35 1 1.1948 -9.9503 -1.0988 36 1 -0.3424 -9.0904 -0.8419 37 1 -1.4673 -8.1997 -2.8733 38 1 -1.2176 -10.9441 -2.1949 39 1 1.1278 -11.6565 -4.1509 40 1 -0.0581 -12.8520 -3.3988 41 1 -1.9887 -11.6372 -4.5098 42 1 -0.8032 -10.4416 -5.2626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691593277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:25 Heat of formation + Delta-G solvation = -115.725190 kcal Electronic energy + Delta-G solvation = -20371.121525 eV Core-core repulsion = 17156.662235 eV Total energy + Delta-G solvation = -3214.459290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04720 -39.52271 -37.43081 -36.58458 -35.30711 -35.25836 -32.99200 -30.58736 -29.27009 -26.97360 -24.86352 -23.56467 -23.18147 -22.15690 -21.79966 -20.97441 -18.58485 -18.45199 -17.85256 -17.30062 -16.62454 -16.49698 -16.37496 -16.06737 -15.76261 -15.48092 -14.92636 -14.81745 -14.50343 -14.24835 -13.85709 -13.69610 -13.62557 -13.25965 -12.90558 -12.55971 -12.41738 -12.39935 -12.36093 -12.05105 -11.52701 -11.50061 -11.43727 -11.28346 -11.16461 -11.02305 -10.69517 -10.55966 -10.14666 -9.67366 -8.20435 -6.31703 1.40431 1.41460 1.52468 1.58570 2.07140 2.40844 2.78281 3.13021 3.48605 3.54366 3.67921 3.72272 3.89870 3.99275 4.04204 4.09162 4.15088 4.23360 4.39635 4.41347 4.55961 4.71047 4.76848 4.80693 4.90319 5.01709 5.03650 5.18339 5.22622 5.23779 5.27578 5.39714 5.51969 5.73125 5.85165 6.04894 6.23771 6.48080 6.51388 6.73574 6.86330 7.21337 7.38086 8.91324 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024875 B = 0.003036 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.359730 B = 9221.547334 C =10036.382462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.133 4.133 12 C 0.084 3.916 13 H 0.121 0.879 14 N -0.832 5.832 15 C 0.522 3.478 16 O -0.575 6.575 17 N -0.715 5.715 18 C 0.093 3.907 19 C 0.138 3.862 20 H 0.108 0.892 21 O -0.567 6.567 22 C -0.199 4.199 23 C -0.170 4.170 24 C -0.164 4.164 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.015 1.015 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.357 0.643 33 H 0.345 0.655 34 H 0.414 0.586 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.388 0.612 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -21.941 -8.171 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.173 4.173 12 C -0.031 4.031 13 H 0.139 0.861 14 N -0.364 5.364 15 C 0.308 3.692 16 O -0.453 6.453 17 N -0.368 5.368 18 C -0.031 4.031 19 C 0.079 3.921 20 H 0.126 0.874 21 O -0.374 6.374 22 C -0.218 4.218 23 C -0.207 4.207 24 C -0.201 4.201 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.003 0.997 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.506 -22.911 -8.172 24.372 hybrid contribution -1.039 2.003 0.509 2.313 sum 0.467 -20.908 -7.664 22.273 Atomic orbital electron populations 1.70103 1.07880 1.27732 1.51857 1.26007 0.95745 1.03476 0.94828 0.85455 0.78686 0.78445 0.78523 1.19693 1.21018 1.18607 1.21732 0.93670 0.92318 1.50233 0.91853 1.19003 0.94493 0.93313 0.94571 1.21432 0.97942 0.92582 1.01278 1.22215 0.98334 0.94505 1.02271 1.21381 0.95150 0.90192 0.96402 0.86136 1.58710 1.28140 1.46305 1.03261 1.20800 0.78343 0.87080 0.82930 1.90639 1.58297 1.57962 1.38447 1.45805 1.57405 1.23933 1.09612 1.22059 0.96882 0.86108 0.98020 1.21594 0.93499 0.85004 0.92049 0.87389 1.86586 1.36289 1.52466 1.62047 1.22910 1.05060 0.96035 0.97753 1.23085 0.97779 0.96662 1.03201 1.22907 0.99404 1.03126 0.94704 0.92844 0.99024 0.99693 0.92585 0.91808 0.91108 0.93398 0.82774 0.84185 0.74898 0.90836 0.91837 0.76222 0.86953 0.88114 0.87685 0.87899 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.20 4.97 29.84 0.15 1.35 16 10 C -0.09 -3.57 4.92 30.59 0.15 -3.42 16 11 C -0.13 -4.22 4.84 30.59 0.15 -4.07 16 12 C 0.08 2.24 3.21 44.17 0.14 2.38 16 13 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 14 N -0.83 -22.83 8.94 -171.80 -1.54 -24.37 16 15 C 0.52 14.63 7.08 87.66 0.62 15.25 16 16 O -0.57 -20.27 16.25 -3.01 -0.05 -20.32 16 17 N -0.71 -15.06 5.45 -463.05 -2.52 -17.58 16 18 C 0.09 1.68 5.32 86.38 0.46 2.14 16 19 C 0.14 1.90 3.25 30.59 0.10 2.00 16 20 H 0.11 1.43 7.90 -2.39 -0.02 1.41 16 21 O -0.57 -9.15 12.99 -148.98 -1.94 -11.08 16 22 C -0.20 -2.33 5.36 -10.79 -0.06 -2.39 16 23 C -0.17 -1.75 10.18 30.62 0.31 -1.44 16 24 C -0.16 -1.84 10.16 30.62 0.31 -1.53 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.06 2.02 6.87 -2.39 -0.02 2.00 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.36 9.00 7.55 -89.69 -0.68 8.32 16 33 H 0.34 10.06 8.58 -89.69 -0.77 9.30 16 34 H 0.41 7.40 8.35 -92.71 -0.77 6.63 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.39 4.58 9.05 -74.05 -0.67 3.91 16 38 H 0.11 1.25 8.11 -2.39 -0.02 1.23 16 39 H 0.10 0.96 8.05 -2.38 -0.02 0.94 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.68 351.70 -2.55 -73.23 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -1.85 Total: 30.43 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 3.03 Total: -19.51 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.77 Total: -98.69 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.98 Total: -31.41 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.68 -2.55 -73.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.497 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds