Wall clock time and date at job start Mon Mar 30 2020 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48136 * 110.99783 * 2 1 4 4 C 1.54789 * 101.87649 * 95.47836 * 3 2 1 5 5 H 1.09004 * 111.02873 * 265.73170 * 4 3 2 6 6 N 1.46496 * 110.85294 * 142.18144 * 4 3 2 7 7 C 1.34783 * 120.00023 * 160.73290 * 6 4 3 8 8 O 1.21273 * 120.00007 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99595 * 180.02562 * 7 6 4 10 10 H 1.08997 * 109.47443 * 319.99602 * 9 7 6 11 11 N 1.46903 * 109.46604 * 200.00003 * 9 7 6 12 12 C 1.52995 * 109.47514 * 80.00280 * 9 7 6 13 13 C 1.52997 * 109.47600 * 184.99448 * 12 9 7 14 14 C 1.50694 * 109.47460 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 C 1.51806 * 102.23452 * 23.99713 * 4 3 2 23 23 O 1.21278 * 126.04040 * 165.16109 * 22 4 3 24 24 N 1.34594 * 107.91973 * 345.17742 * 22 4 3 25 25 H 1.09004 * 109.47061 * 300.18425 * 1 2 3 26 26 H 1.08995 * 109.47107 * 60.18926 * 1 2 3 27 27 H 1.09004 * 109.46881 * 180.19331 * 1 2 3 28 28 H 1.09002 * 110.95174 * 337.32899 * 3 2 1 29 29 H 1.08999 * 110.94798 * 213.62342 * 3 2 1 30 30 H 0.97001 * 120.00017 * 340.73635 * 6 4 3 31 31 H 1.00893 * 111.00208 * 299.99502 * 11 9 7 32 32 H 1.00904 * 111.00274 * 63.95945 * 11 9 7 33 33 H 1.09003 * 109.47604 * 64.99269 * 12 9 7 34 34 H 1.08999 * 109.47292 * 304.99634 * 12 9 7 35 35 H 1.09005 * 109.46800 * 60.00280 * 13 12 9 36 36 H 1.08998 * 109.47382 * 300.00079 * 13 12 9 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 38 38 H 0.96999 * 123.52328 * 178.40891 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3830 0.0000 4 6 2.2490 1.6286 1.5078 5 1 1.3942 2.1223 1.9702 6 7 3.4724 2.4075 1.7141 7 6 3.6702 3.0557 2.8792 8 8 2.8352 2.9945 3.7565 9 6 4.9285 3.8575 3.0911 10 1 5.7772 3.3207 2.6672 11 7 5.1451 4.0574 4.5303 12 6 4.7893 5.2167 2.4027 13 6 6.1103 5.9810 2.5108 14 6 5.9733 7.3195 1.8322 15 1 5.0378 7.5971 1.3695 16 6 7.0427 8.1893 1.8009 17 7 8.1821 7.8509 2.3639 18 14 6.8732 9.8482 0.9591 19 1 8.1552 10.5899 1.0642 20 1 6.5344 9.6446 -0.4723 21 1 5.7947 10.6290 1.6167 22 6 2.4111 0.2166 2.0413 23 8 2.8687 -0.0898 3.1218 24 7 1.9576 -0.6352 1.1030 25 1 -0.3633 0.5167 0.8884 26 1 -0.3633 0.5109 -0.8916 27 1 -0.3633 -1.0277 0.0035 28 1 1.2626 2.0835 -0.3924 29 1 2.9308 1.4431 -0.5637 30 1 4.1401 2.4569 1.0122 31 1 4.3715 4.5534 4.9468 32 1 5.3044 3.1775 4.9977 33 1 3.9977 5.7894 2.8858 34 1 4.5406 5.0680 1.3519 35 1 6.9020 5.4083 2.0275 36 1 6.3591 6.1297 3.5616 37 1 8.9346 8.4627 2.3416 38 1 1.9765 -1.6000 1.2013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691623148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:07 Heat of formation + Delta-G solvation = -65.141620 kcal Electronic energy + Delta-G solvation = -20832.941383 eV Core-core repulsion = 17517.135218 eV Total energy + Delta-G solvation = -3315.806165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44106 -40.77000 -38.64213 -36.85843 -35.91716 -34.79669 -32.41567 -31.92314 -31.04980 -28.12793 -26.71431 -25.37342 -23.72605 -22.78331 -21.82071 -21.27605 -19.06464 -18.59474 -18.18928 -17.77865 -17.61123 -16.87814 -16.48652 -16.29777 -16.00378 -15.31522 -15.17356 -15.00371 -14.92602 -14.59755 -14.25197 -13.99964 -13.78909 -13.41991 -13.18331 -12.74927 -12.73750 -12.50498 -12.26900 -11.90468 -11.76778 -11.63444 -11.33331 -11.25149 -11.00864 -10.45977 -10.24711 -9.68556 -9.47009 -8.10924 -6.21375 1.06976 1.40369 1.44860 1.47410 1.54996 1.72009 2.06286 2.47271 2.90669 3.22323 3.26406 3.33274 3.54574 3.80899 3.91722 4.11393 4.28423 4.30793 4.52631 4.53726 4.70099 4.80312 4.95264 4.97155 5.15255 5.22043 5.28043 5.60168 5.77748 5.86912 6.01292 6.05219 6.30421 6.32323 6.37584 6.46418 6.97703 7.02434 7.06338 7.46864 9.00223 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.003728 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.071505 B = 7508.114689 C = 8156.171423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.288 5.288 3 C 0.034 3.966 4 C 0.082 3.918 5 H 0.113 0.887 6 N -0.697 5.697 7 C 0.493 3.507 8 O -0.572 6.572 9 C 0.087 3.913 10 H 0.109 0.891 11 N -0.818 5.818 12 C -0.080 4.080 13 C 0.038 3.962 14 C -0.542 4.542 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.287 1.287 20 H -0.263 1.263 21 H -0.271 1.271 22 C 0.481 3.519 23 O -0.555 6.555 24 N -0.561 5.561 25 H 0.032 0.968 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.423 0.577 31 H 0.345 0.655 32 H 0.344 0.656 33 H 0.044 0.956 34 H 0.077 0.923 35 H -0.005 1.005 36 H 0.002 0.998 37 H 0.261 0.739 38 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -16.496 -9.881 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 N -0.106 5.106 3 C -0.093 4.093 4 C -0.029 4.029 5 H 0.131 0.869 6 N -0.352 5.352 7 C 0.279 3.721 8 O -0.451 6.451 9 C -0.029 4.029 10 H 0.127 0.873 11 N -0.347 5.347 12 C -0.118 4.118 13 C 0.000 4.000 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.785 3.215 19 H -0.212 1.212 20 H -0.188 1.188 21 H -0.197 1.197 22 C 0.263 3.737 23 O -0.429 6.429 24 N -0.310 5.310 25 H 0.051 0.949 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.261 0.739 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.013 0.987 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -15.112 -16.389 -9.297 24.154 hybrid contribution -0.680 0.234 0.661 0.977 sum -15.792 -16.156 -8.635 24.186 Atomic orbital electron populations 1.23409 0.85529 1.04641 1.03241 1.64993 1.09656 1.14640 1.21285 1.24115 1.05657 0.88645 0.90877 1.22214 0.90950 0.89616 1.00149 0.86938 1.45649 1.21724 1.49775 1.18023 1.22524 0.89538 0.78517 0.81532 1.90652 1.46898 1.63779 1.43755 1.21676 0.93151 0.96526 0.91519 0.87275 1.59006 1.48079 1.25937 1.01660 1.21403 0.99261 0.91968 0.99167 1.18837 0.91909 0.93333 0.95886 1.21715 0.97979 1.02653 1.35697 0.92228 1.25929 0.95063 1.02408 0.96374 1.70113 1.03233 1.37979 1.45886 0.85573 0.77213 0.79240 0.79428 1.21241 1.18778 1.19656 1.22279 0.77421 0.90416 0.83542 1.90772 1.46679 1.82950 1.22507 1.45914 1.61268 1.09495 1.14361 0.94933 0.86575 0.89332 0.84387 0.85370 0.73861 0.84101 0.84338 0.93709 0.90484 0.98711 0.97925 0.93008 0.71763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.14 9.74 127.69 1.24 1.11 16 2 N -0.29 -3.07 5.88 -530.83 -3.12 -6.19 16 3 C 0.03 0.34 6.86 86.68 0.59 0.93 16 4 C 0.08 1.63 3.34 45.21 0.15 1.78 16 5 H 0.11 2.52 7.71 -2.38 -0.02 2.51 16 6 N -0.70 -15.93 5.19 -441.50 -2.29 -18.22 16 7 C 0.49 15.59 7.06 87.66 0.62 16.21 16 8 O -0.57 -22.07 15.98 -3.01 -0.05 -22.12 16 9 C 0.09 2.94 3.15 44.17 0.14 3.08 16 10 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 11 N -0.82 -29.29 8.44 -171.81 -1.45 -30.74 16 12 C -0.08 -3.10 4.78 30.59 0.15 -2.95 16 13 C 0.04 1.93 4.86 29.85 0.15 2.07 16 14 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.00 0.00 5.46 84.66 0.46 0.46 16 17 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.48 11.79 8.28 88.04 0.73 12.52 16 23 O -0.55 -19.64 18.03 -3.02 -0.05 -19.70 16 24 N -0.56 -8.77 5.96 -172.81 -1.03 -9.80 16 25 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.12 0.27 8.12 -2.39 -0.02 0.25 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.14 0.63 7.77 -2.39 -0.02 0.61 16 29 H 0.13 0.93 7.80 -2.39 -0.02 0.91 16 30 H 0.42 7.23 8.38 -92.71 -0.78 6.45 16 31 H 0.35 12.54 8.58 -89.70 -0.77 11.77 16 32 H 0.34 11.22 9.06 -89.69 -0.81 10.41 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 35 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 36 H 0.00 0.13 7.75 -2.39 -0.02 0.11 16 37 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 38 H 0.44 5.49 8.96 -215.66 -1.93 3.56 16 Total: -1.00 -79.70 325.32 -4.40 -84.10 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -3.18 Total: 28.12 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.46 Total: 5.21 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -7.61 Total: -121.42 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.10 Total: -41.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -79.70 -4.40 -84.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691623148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.958 kcal (2) G-P(sol) polarization free energy of solvation -79.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds