Wall clock time and date at job start Mon Mar 30 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00136 * 2 1 4 4 H 1.08996 * 108.31586 * 332.38302 * 3 2 1 5 5 C 1.52579 * 108.50969 * 214.76658 * 3 2 1 6 6 C 1.50886 * 109.35309 * 153.73578 * 5 3 2 7 7 C 1.53946 * 110.09358 * 91.88929 * 6 5 3 8 8 N 1.47604 * 112.14273 * 319.42706 * 7 6 5 9 9 C 1.34780 * 118.64304 * 137.89217 * 8 7 6 10 10 O 1.21435 * 119.99661 * 358.22292 * 9 8 7 11 11 C 1.48824 * 119.99945 * 178.22266 * 9 8 7 12 12 O 1.21503 * 120.00357 * 6.18929 * 11 9 8 13 13 N 1.34777 * 120.00442 * 186.18873 * 11 9 8 14 14 C 1.36111 * 120.00728 * 179.97438 * 13 11 9 15 15 H 1.08004 * 120.00130 * 0.02562 * 14 13 11 16 16 C 1.39582 * 120.00415 * 180.02562 * 14 13 11 17 17 N 1.31022 * 120.00001 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00488 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46798 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47206 * 119.99845 * 18 16 14 21 21 H 1.48497 * 109.47185 * 240.00182 * 18 16 14 22 22 C 1.44577 * 122.71526 * 317.87549 * 8 7 6 23 23 C 1.47091 * 108.51254 * 90.00489 * 3 2 1 24 24 H 1.08999 * 109.47057 * 300.00167 * 1 2 3 25 25 H 1.09001 * 109.47018 * 59.99837 * 1 2 3 26 26 H 1.08995 * 109.47687 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.48830 * 273.70218 * 5 3 2 28 28 H 1.08998 * 109.49083 * 33.77082 * 5 3 2 29 29 H 1.08998 * 109.36823 * 331.69320 * 6 5 3 30 30 H 1.08999 * 109.36321 * 212.07599 * 6 5 3 31 31 H 1.09006 * 108.94532 * 198.74853 * 7 6 5 32 32 H 1.08989 * 108.95090 * 80.11783 * 7 6 5 33 33 H 0.97002 * 119.99108 * 359.97438 * 13 11 9 34 34 H 0.96995 * 120.00282 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.44816 * 330.68509 * 22 8 7 36 36 H 1.08999 * 109.43438 * 210.74970 * 22 8 7 37 37 H 1.09006 * 109.32538 * 304.31311 * 23 3 2 38 38 H 1.08995 * 109.33171 * 63.96631 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3120 1.9913 -0.4797 5 6 3.2930 1.2645 -0.8250 6 6 3.5735 2.6385 -1.3818 7 6 4.4805 3.4247 -0.4179 8 7 4.1082 3.2120 0.9945 9 6 5.0893 3.0362 1.9018 10 8 6.2502 3.0226 1.5458 11 6 4.7498 2.8588 3.3399 12 8 3.5882 2.7596 3.6822 13 7 5.7307 2.8080 4.2627 14 6 5.4203 2.6463 5.5780 15 1 4.3877 2.5582 5.8823 16 6 6.4362 2.5943 6.5338 17 7 7.6888 2.7017 6.1648 18 14 6.0102 2.3716 8.3389 19 1 4.5361 2.2771 8.4915 20 1 6.6417 1.1273 8.8467 21 1 6.5139 3.5341 9.1135 22 6 2.7347 3.1847 1.4449 23 6 2.2003 1.7320 1.3948 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.1231 0.9524 -0.1914 28 1 3.1753 0.5567 -1.6455 29 1 2.6335 3.1746 -1.5119 30 1 4.0696 2.5427 -2.3477 31 1 4.4042 4.4875 -0.6477 32 1 5.5126 3.1060 -0.5637 33 1 6.6581 2.8868 3.9894 34 1 8.3949 2.6652 6.8289 35 1 2.1277 3.8172 0.7972 36 1 2.6812 3.5559 2.4683 37 1 1.2471 1.6799 1.9210 38 1 2.9171 1.0697 1.8802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692016491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:53 Heat of formation + Delta-G solvation = -104.505429 kcal Electronic energy + Delta-G solvation = -21754.670068 eV Core-core repulsion = 18404.864209 eV Total energy + Delta-G solvation = -3349.805859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28704 -38.67276 -37.29917 -36.20605 -34.39933 -32.88446 -31.86174 -31.39279 -27.41682 -26.46117 -25.47457 -24.66708 -23.11601 -20.81981 -20.30127 -18.87299 -18.02781 -17.00411 -16.58479 -15.94381 -15.43809 -15.27283 -15.06280 -14.97750 -14.26317 -13.98859 -13.91725 -13.54412 -13.15386 -12.84004 -12.45355 -12.28508 -12.19628 -11.78177 -11.75946 -11.29511 -11.19969 -11.17482 -10.85272 -10.70098 -10.47073 -10.42676 -10.40031 -10.08000 -9.74587 -9.45505 -8.33917 -8.22625 -7.84737 -6.68665 -4.00817 2.43353 3.12977 3.14772 3.20790 3.32875 3.78583 4.03452 4.24119 4.65468 4.87716 4.95616 5.07200 5.16062 5.17967 5.30915 5.32557 5.41988 5.50239 5.59923 5.67089 5.69811 5.78316 5.90027 5.94590 6.05224 6.18577 6.21267 6.34206 6.56527 6.69470 7.04292 7.28835 7.30274 7.66040 7.80295 8.32192 8.59896 8.94675 9.30443 9.83520 10.46086 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024823 B = 0.005093 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.715446 B = 5496.342458 C = 6265.031782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.096 3.904 4 H 0.048 0.952 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.106 3.894 8 N -0.589 5.589 9 C 0.509 3.491 10 O -0.549 6.549 11 C 0.393 3.607 12 O -0.584 6.584 13 N -0.497 5.497 14 C -0.305 4.305 15 H 0.114 0.886 16 C 0.031 3.969 17 N -0.868 5.868 18 Si 0.938 3.062 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.094 3.906 23 C -0.145 4.145 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.404 0.596 34 H 0.280 0.720 35 H 0.053 0.947 36 H 0.143 0.857 37 H 0.071 0.929 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 -0.171 -11.736 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C 0.039 3.961 4 H 0.066 0.934 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.016 4.016 8 N -0.323 5.323 9 C 0.295 3.705 10 O -0.426 6.426 11 C 0.178 3.822 12 O -0.473 6.473 13 N -0.130 5.130 14 C -0.435 4.435 15 H 0.132 0.868 16 C -0.176 4.176 17 N -0.506 5.506 18 Si 0.764 3.236 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.029 4.029 23 C -0.184 4.184 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.769 -0.394 -11.629 15.192 hybrid contribution 0.134 0.093 0.573 0.595 sum -9.635 -0.300 -11.056 14.668 Atomic orbital electron populations 1.22737 0.81738 1.02297 0.99685 1.87952 1.19113 1.28785 1.95320 1.21244 0.94514 0.83881 0.96463 0.93363 1.21156 0.97421 0.97059 0.99655 1.21675 1.00305 0.95785 0.98618 1.21837 1.00362 0.99109 0.80284 1.47491 1.07118 1.71079 1.06568 1.20769 0.84922 0.76396 0.88382 1.90667 1.19555 1.50756 1.81631 1.18911 0.86620 0.91157 0.85533 1.90376 1.18080 1.58566 1.80323 1.41594 1.09104 1.55974 1.06347 1.19927 0.95692 1.46826 0.81083 0.86833 1.25595 0.94469 0.95948 1.01576 1.69493 0.99586 1.45092 1.36404 0.85672 0.79354 0.78111 0.80506 1.18706 1.20290 1.20311 1.22360 0.80251 0.95450 1.04822 1.21553 1.02710 0.98446 0.95688 0.94018 0.94522 0.90067 0.90774 0.91024 0.91694 0.90333 0.92116 0.89205 0.76044 0.90946 0.92823 0.84007 0.91005 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.74 101.05 1.08 1.43 16 2 O -0.39 -5.66 10.17 -35.23 -0.36 -6.02 16 3 C 0.10 1.32 2.10 -29.78 -0.06 1.25 16 4 H 0.05 0.57 6.90 -51.93 -0.36 0.22 16 5 C -0.12 -1.53 5.16 -28.01 -0.14 -1.67 16 6 C -0.13 -1.40 5.71 -27.30 -0.16 -1.56 16 7 C 0.11 1.50 6.11 -2.94 -0.02 1.48 16 8 N -0.59 -10.32 2.24 -173.28 -0.39 -10.70 16 9 C 0.51 11.11 7.67 -11.88 -0.09 11.02 16 10 O -0.55 -12.94 15.75 5.42 0.09 -12.85 16 11 C 0.39 9.61 7.66 -11.88 -0.09 9.52 16 12 O -0.58 -14.48 11.75 5.36 0.06 -14.42 16 13 N -0.50 -13.09 5.24 -11.59 -0.06 -13.15 16 14 C -0.30 -8.22 9.67 -15.15 -0.15 -8.37 16 15 H 0.11 3.11 7.15 -52.48 -0.38 2.74 16 16 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 17 N -0.87 -23.11 13.03 55.53 0.72 -22.38 16 18 Si 0.94 19.87 29.56 -169.99 -5.02 14.84 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 C 0.09 1.52 4.98 -4.09 -0.02 1.50 16 23 C -0.15 -2.32 4.66 -28.58 -0.13 -2.45 16 24 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 25 H 0.04 0.33 8.06 -51.93 -0.42 -0.09 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.19 7.48 -51.93 -0.39 0.80 16 28 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.06 0.64 7.32 -51.93 -0.38 0.26 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.39 6.93 -51.94 -0.36 1.03 16 33 H 0.40 10.85 7.36 -40.82 -0.30 10.55 16 34 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 35 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.14 2.71 4.88 -53.69 -0.26 2.45 16 37 H 0.07 1.09 7.53 -51.93 -0.39 0.70 16 38 H 0.08 1.52 7.82 -51.93 -0.41 1.12 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -29.52 306.91 -5.48 -35.00 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.27 Total: 12.20 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 0.13 Total: 12.85 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.27 Total: -46.23 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.21 Total: -33.29 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.52 -5.48 -35.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692016491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.507 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds