Wall clock time and date at job start Mon Mar 30 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00136 * 2 1 4 4 H 1.08996 * 108.31586 * 332.38302 * 3 2 1 5 5 C 1.52579 * 108.50969 * 214.76658 * 3 2 1 6 6 C 1.50886 * 109.35309 * 153.73578 * 5 3 2 7 7 C 1.53946 * 110.09358 * 91.88929 * 6 5 3 8 8 N 1.47604 * 112.14273 * 319.42706 * 7 6 5 9 9 C 1.34780 * 118.64304 * 137.89217 * 8 7 6 10 10 O 1.21435 * 119.99661 * 358.22292 * 9 8 7 11 11 C 1.48824 * 119.99945 * 178.22266 * 9 8 7 12 12 O 1.21503 * 120.00357 * 6.18929 * 11 9 8 13 13 N 1.34777 * 120.00442 * 186.18873 * 11 9 8 14 14 C 1.36111 * 120.00728 * 179.97438 * 13 11 9 15 15 H 1.08004 * 120.00130 * 0.02562 * 14 13 11 16 16 C 1.39582 * 120.00415 * 180.02562 * 14 13 11 17 17 N 1.31022 * 120.00001 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00488 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46798 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47206 * 119.99845 * 18 16 14 21 21 H 1.48497 * 109.47185 * 240.00182 * 18 16 14 22 22 C 1.44577 * 122.71526 * 317.87549 * 8 7 6 23 23 C 1.47091 * 108.51254 * 90.00489 * 3 2 1 24 24 H 1.08999 * 109.47057 * 300.00167 * 1 2 3 25 25 H 1.09001 * 109.47018 * 59.99837 * 1 2 3 26 26 H 1.08995 * 109.47687 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.48830 * 273.70218 * 5 3 2 28 28 H 1.08998 * 109.49083 * 33.77082 * 5 3 2 29 29 H 1.08998 * 109.36823 * 331.69320 * 6 5 3 30 30 H 1.08999 * 109.36321 * 212.07599 * 6 5 3 31 31 H 1.09006 * 108.94532 * 198.74853 * 7 6 5 32 32 H 1.08989 * 108.95090 * 80.11783 * 7 6 5 33 33 H 0.97002 * 119.99108 * 359.97438 * 13 11 9 34 34 H 0.96995 * 120.00282 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.44816 * 330.68509 * 22 8 7 36 36 H 1.08999 * 109.43438 * 210.74970 * 22 8 7 37 37 H 1.09006 * 109.32538 * 304.31311 * 23 3 2 38 38 H 1.08995 * 109.33171 * 63.96631 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3120 1.9913 -0.4797 5 6 3.2930 1.2645 -0.8250 6 6 3.5735 2.6385 -1.3818 7 6 4.4805 3.4247 -0.4179 8 7 4.1082 3.2120 0.9945 9 6 5.0893 3.0362 1.9018 10 8 6.2502 3.0226 1.5458 11 6 4.7498 2.8588 3.3399 12 8 3.5882 2.7596 3.6822 13 7 5.7307 2.8080 4.2627 14 6 5.4203 2.6463 5.5780 15 1 4.3877 2.5582 5.8823 16 6 6.4362 2.5943 6.5338 17 7 7.6888 2.7017 6.1648 18 14 6.0102 2.3716 8.3389 19 1 4.5361 2.2771 8.4915 20 1 6.6417 1.1273 8.8467 21 1 6.5139 3.5341 9.1135 22 6 2.7347 3.1847 1.4449 23 6 2.2003 1.7320 1.3948 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.1231 0.9524 -0.1914 28 1 3.1753 0.5567 -1.6455 29 1 2.6335 3.1746 -1.5119 30 1 4.0696 2.5427 -2.3477 31 1 4.4042 4.4875 -0.6477 32 1 5.5126 3.1060 -0.5637 33 1 6.6581 2.8868 3.9894 34 1 8.3949 2.6652 6.8289 35 1 2.1277 3.8172 0.7972 36 1 2.6812 3.5559 2.4683 37 1 1.2471 1.6799 1.9210 38 1 2.9171 1.0697 1.8802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692016491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:52 Heat of formation + Delta-G solvation = -125.571557 kcal Electronic energy + Delta-G solvation = -21755.583564 eV Core-core repulsion = 18404.864209 eV Total energy + Delta-G solvation = -3350.719355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.85495 -40.02427 -39.06999 -37.62046 -36.24483 -34.23537 -33.36667 -33.07404 -28.70938 -27.82506 -27.00508 -25.86665 -24.75079 -22.24575 -21.45920 -20.65503 -19.82852 -18.48235 -18.06030 -17.47788 -16.87586 -16.79038 -16.44668 -16.16955 -15.87122 -15.58538 -15.40296 -14.95948 -14.44442 -14.34016 -13.92410 -13.70447 -13.55301 -13.38077 -12.99398 -12.84125 -12.55285 -12.48975 -12.21433 -12.07998 -12.03371 -11.84166 -11.76844 -11.56251 -11.44135 -10.53736 -10.24916 -9.88281 -9.56898 -8.64202 -6.08376 0.61775 1.41025 1.45537 1.56720 1.77465 2.27986 2.36516 2.83865 3.11400 3.16608 3.63515 3.90456 3.96010 4.01836 4.12644 4.23937 4.37697 4.45349 4.52708 4.57057 4.60227 4.67693 4.86543 4.87854 4.97361 5.01346 5.11579 5.23202 5.26882 5.29825 5.35528 5.62991 5.71415 6.12646 6.33264 6.36875 6.81101 7.00154 7.30751 7.82808 8.52057 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024823 B = 0.005093 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.715446 B = 5496.342458 C = 6265.031782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.418 6.418 3 C 0.096 3.904 4 H 0.082 0.918 5 C -0.115 4.115 6 C -0.114 4.114 7 C 0.099 3.901 8 N -0.573 5.573 9 C 0.507 3.493 10 O -0.573 6.573 11 C 0.391 3.609 12 O -0.590 6.590 13 N -0.515 5.515 14 C -0.340 4.340 15 H 0.101 0.899 16 C -0.007 4.007 17 N -0.900 5.900 18 Si 1.009 2.991 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.266 1.266 22 C 0.093 3.907 23 C -0.136 4.136 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.287 0.713 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 0.411 -13.377 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.338 6.338 3 C 0.039 3.961 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.022 4.022 8 N -0.304 5.304 9 C 0.292 3.708 10 O -0.453 6.453 11 C 0.177 3.823 12 O -0.479 6.479 13 N -0.149 5.149 14 C -0.470 4.470 15 H 0.119 0.881 16 C -0.210 4.210 17 N -0.538 5.538 18 Si 0.830 3.170 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.191 1.191 22 C -0.030 4.030 23 C -0.175 4.175 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.674 0.193 -13.306 17.702 hybrid contribution 0.590 -0.099 0.948 1.121 sum -11.084 0.094 -12.358 16.600 Atomic orbital electron populations 1.22961 0.79870 1.03550 1.00788 1.87933 1.21303 1.29203 1.95370 1.21230 0.95519 0.84502 0.94827 0.90053 1.21167 0.95842 0.98874 0.99395 1.21681 1.01136 0.93895 0.98451 1.22199 1.00392 1.01367 0.78243 1.47595 1.06715 1.68528 1.07603 1.20314 0.85518 0.77178 0.87839 1.90650 1.20522 1.52426 1.81695 1.19577 0.86318 0.89563 0.86865 1.90390 1.18262 1.58002 1.81253 1.41697 1.09004 1.57501 1.06718 1.19996 0.95612 1.49415 0.81987 0.88131 1.26527 0.94030 0.94749 1.05741 1.69566 1.00493 1.45608 1.38110 0.84648 0.79023 0.78532 0.74753 1.18651 1.19372 1.19102 1.22305 0.80011 0.96376 1.04267 1.21463 1.01442 0.97159 0.97422 0.93976 0.92214 0.88966 0.94625 0.89654 0.88871 0.87468 0.89388 0.90952 0.76806 0.90258 0.88138 0.87087 0.90496 0.95130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.74 113.37 1.22 1.67 16 2 O -0.42 -11.31 10.17 -148.98 -1.52 -12.82 16 3 C 0.10 2.40 2.10 28.62 0.06 2.46 16 4 H 0.08 1.53 6.90 -2.39 -0.02 1.51 16 5 C -0.11 -2.79 5.16 29.77 0.15 -2.64 16 6 C -0.11 -2.07 5.71 30.23 0.17 -1.89 16 7 C 0.10 2.53 6.11 86.49 0.53 3.06 16 8 N -0.57 -19.61 2.24 -820.47 -1.84 -21.45 16 9 C 0.51 22.73 7.67 87.08 0.67 23.39 16 10 O -0.57 -27.91 15.75 -3.51 -0.06 -27.96 16 11 C 0.39 20.04 7.66 87.08 0.67 20.71 16 12 O -0.59 -30.45 11.75 -3.72 -0.04 -30.49 16 13 N -0.52 -28.57 5.24 -308.88 -1.62 -30.19 16 14 C -0.34 -19.16 9.67 84.35 0.82 -18.35 16 15 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 16 C -0.01 -0.35 5.51 85.14 0.47 0.11 16 17 N -0.90 -49.10 13.03 21.76 0.28 -48.81 16 18 Si 1.01 41.16 29.56 68.60 2.03 43.19 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 22 C 0.09 2.87 4.98 87.37 0.44 3.31 16 23 C -0.14 -4.26 4.66 29.39 0.14 -4.12 16 24 H 0.04 0.77 7.57 -2.39 -0.02 0.75 16 25 H 0.06 0.84 8.06 -2.39 -0.02 0.82 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 1.13 7.48 -2.39 -0.02 1.12 16 28 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 29 H 0.09 1.25 7.32 -2.39 -0.02 1.24 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 2.16 6.93 -2.39 -0.02 2.14 16 33 H 0.40 22.59 7.36 -92.71 -0.68 21.91 16 34 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 35 H 0.10 2.24 8.07 -2.39 -0.02 2.22 16 36 H 0.11 4.25 4.88 -30.20 -0.15 4.10 16 37 H 0.08 2.28 7.53 -2.38 -0.02 2.27 16 38 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 Total: -1.00 -67.79 306.91 2.82 -64.96 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.26 Total: 35.88 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 5.32 Total: 27.71 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -3.17 Total: -100.45 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -1.61 Total: -71.28 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -67.79 2.82 -64.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692016491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.607 kcal (2) G-P(sol) polarization free energy of solvation -67.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds