Wall clock time and date at job start Mon Mar 30 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00067 * 2 1 4 4 C 1.50698 * 109.46941 * 90.00596 * 3 2 1 5 5 H 1.07995 * 120.00272 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99949 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00209 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99921 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47132 * 89.99928 * 8 6 4 10 10 H 1.48500 * 109.47199 * 210.00097 * 8 6 4 11 11 H 1.48504 * 109.47193 * 330.00159 * 8 6 4 12 12 C 1.34777 * 119.99826 * 180.02562 * 2 1 3 13 13 O 1.21595 * 119.99783 * 187.73476 * 12 2 1 14 14 N 1.34771 * 120.00199 * 7.72835 * 12 2 1 15 15 C 1.46498 * 119.99790 * 7.79561 * 14 12 2 16 16 C 1.46496 * 120.00036 * 187.80059 * 14 12 2 17 17 H 1.08998 * 112.84885 * 15.82770 * 16 14 12 18 18 C 1.53782 * 113.61508 * 147.13078 * 16 14 12 19 19 C 1.53779 * 87.08402 * 139.97846 * 18 16 14 20 20 H 1.09009 * 113.68741 * 89.12301 * 19 18 16 21 21 C 1.50693 * 113.61617 * 220.01810 * 19 18 16 22 22 O 1.20829 * 119.99701 * 97.50008 * 21 19 18 23 23 O 1.34232 * 120.00112 * 277.49611 * 21 19 18 24 24 C 1.53778 * 87.08054 * 334.56922 * 19 18 16 25 25 H 1.09003 * 109.47622 * 94.95924 * 1 2 3 26 26 H 1.08997 * 109.47132 * 214.96758 * 1 2 3 27 27 H 1.09007 * 109.47087 * 334.96121 * 1 2 3 28 28 H 1.09003 * 109.47127 * 210.00209 * 3 2 1 29 29 H 1.09001 * 109.47099 * 330.00251 * 3 2 1 30 30 H 0.97002 * 119.99956 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47336 * 35.05445 * 15 14 12 32 32 H 1.09007 * 109.46929 * 155.04910 * 15 14 12 33 33 H 1.09001 * 109.47983 * 275.04957 * 15 14 12 34 34 H 1.09003 * 113.61527 * 254.52972 * 18 16 14 35 35 H 1.09001 * 113.61319 * 25.43081 * 18 16 14 36 36 H 0.96701 * 116.99939 * 180.02562 * 23 21 19 37 37 H 1.09000 * 113.61502 * 270.88165 * 24 19 18 38 38 H 1.09002 * 113.69521 * 139.98812 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1261 2.8779 1.6728 7 7 3.3459 3.2572 2.9127 8 14 3.7330 3.9292 0.2530 9 1 2.6810 4.9074 -0.1236 10 1 4.9606 4.6563 0.6647 11 1 4.0397 3.0596 -0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3465 -1.1721 0.1412 14 7 1.4742 -2.3290 -0.1580 15 6 0.0493 -2.3174 -0.4983 16 6 2.1765 -3.6035 0.0113 17 1 3.1335 -3.4948 0.5215 18 6 1.2925 -4.7221 0.5876 19 6 1.9876 -5.6731 -0.4010 20 1 2.8930 -6.1323 -0.0039 21 6 1.0544 -6.6720 -1.0352 22 8 0.5969 -6.4589 -2.1330 23 8 0.7316 -7.7986 -0.3806 24 6 2.2566 -4.4386 -1.2775 25 1 -0.3634 -0.0888 -1.0238 26 1 -0.3633 -0.8421 0.5890 27 1 -0.3634 0.9311 0.4350 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5138 30 1 3.8228 4.0831 3.0899 31 1 -0.1603 -1.4739 -1.1562 32 1 -0.2108 -3.2467 -1.0052 33 1 -0.5413 -2.2229 0.4129 34 1 1.5021 -4.9495 1.6329 35 1 0.2297 -4.5854 0.3880 36 1 0.1299 -8.4092 -0.8280 37 1 1.4575 -4.2243 -1.9871 38 1 3.2442 -4.4357 -1.7389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693050232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:21 Heat of formation + Delta-G solvation = -43.412902 kcal Electronic energy + Delta-G solvation = -21249.230994 eV Core-core repulsion = 17902.074305 eV Total energy + Delta-G solvation = -3347.156688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08872 -39.92547 -38.12305 -36.31367 -35.23131 -34.13925 -32.28139 -28.93602 -27.57250 -26.90563 -25.94111 -24.72142 -22.90927 -21.36059 -19.43517 -19.26229 -18.32841 -17.29564 -16.94120 -16.44111 -16.13403 -15.80691 -15.52106 -15.03602 -14.47213 -14.06873 -13.43547 -13.23682 -13.17793 -12.97678 -12.83647 -12.56741 -12.30483 -11.99154 -11.75531 -11.66250 -11.43768 -11.26473 -10.87818 -10.76384 -10.66183 -10.50928 -10.30596 -10.04366 -9.50772 -9.23795 -8.54570 -8.39679 -7.50828 -6.03524 -4.01211 1.90633 2.70245 3.17546 3.30363 3.39469 3.42891 3.76443 4.14392 4.21597 4.42899 4.44920 4.67802 4.69939 5.08158 5.13071 5.28429 5.33361 5.40840 5.43049 5.53441 5.64411 5.66563 5.79487 5.84079 5.89877 6.12557 6.20985 6.23995 6.50630 6.82819 6.95160 7.33089 7.54706 7.61921 7.68926 8.53914 8.57184 9.00870 9.27339 9.57472 11.10184 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042061 B = 0.003941 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.535005 B = 7102.235848 C = 7202.584574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.612 5.612 3 C 0.233 3.767 4 C -0.524 4.524 5 H 0.074 0.926 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.706 3.294 13 O -0.578 6.578 14 N -0.629 5.629 15 C 0.057 3.943 16 C 0.151 3.849 17 H 0.125 0.875 18 C -0.133 4.133 19 C -0.110 4.110 20 H 0.129 0.871 21 C 0.491 3.509 22 O -0.515 6.515 23 O -0.516 6.516 24 C -0.134 4.134 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.408 0.592 37 H 0.098 0.902 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -18.592 -7.559 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.347 5.347 3 C 0.112 3.888 4 C -0.562 4.562 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.408 3.592 13 O -0.454 6.454 14 N -0.367 5.367 15 C -0.085 4.085 16 C 0.045 3.955 17 H 0.142 0.858 18 C -0.171 4.171 19 C -0.130 4.130 20 H 0.147 0.853 21 C 0.333 3.667 22 O -0.402 6.402 23 O -0.327 6.327 24 C -0.173 4.173 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.266 0.734 37 H 0.117 0.883 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.582 -18.029 -7.473 20.938 hybrid contribution -0.245 0.125 -0.865 0.908 sum -7.828 -17.904 -8.338 21.245 Atomic orbital electron populations 1.22612 0.81796 1.03964 0.99575 1.47020 1.05626 1.05755 1.76313 1.19558 0.92027 0.79010 0.98224 1.21366 1.36585 1.06852 0.91447 0.90813 1.24860 0.95347 0.97399 0.95541 1.69902 1.41762 1.23534 1.18646 0.86866 0.78868 0.80767 0.83322 1.20179 1.20985 1.18859 1.15921 0.85176 0.80071 0.78003 1.90887 1.12317 1.85479 1.56756 1.46888 1.09799 1.04437 1.75580 1.22749 0.81944 1.03400 1.00381 1.22181 0.96915 0.80716 0.95648 0.85760 1.23463 1.00480 0.93835 0.99370 1.22327 0.98541 0.92054 1.00032 0.85311 1.23355 0.79532 0.80452 0.83330 1.90720 1.52173 1.76312 1.21032 1.84573 1.63964 1.31994 1.52213 1.23536 1.04021 0.91640 0.98088 0.93532 0.90305 0.91190 0.94347 0.95746 0.92654 0.88940 0.92312 0.92396 0.89303 0.88965 0.73393 0.88348 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.64 59.85 0.52 1.50 16 2 N -0.61 -12.92 2.86 -188.74 -0.54 -13.46 16 3 C 0.23 5.80 4.15 -5.19 -0.02 5.78 16 4 C -0.52 -15.32 9.94 -34.44 -0.34 -15.66 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 8 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 12 C 0.71 14.95 8.10 -86.92 -0.70 14.24 16 13 O -0.58 -14.74 15.59 5.28 0.08 -14.66 16 14 N -0.63 -9.79 3.08 -178.73 -0.55 -10.34 16 15 C 0.06 0.66 7.40 59.85 0.44 1.11 16 16 C 0.15 1.97 4.13 -67.12 -0.28 1.69 16 17 H 0.12 1.82 7.39 -51.93 -0.38 1.44 16 18 C -0.13 -1.28 6.98 -25.92 -0.18 -1.46 16 19 C -0.11 -0.99 4.26 -90.97 -0.39 -1.38 16 20 H 0.13 0.93 8.14 -51.92 -0.42 0.50 16 21 C 0.49 4.76 7.85 36.00 0.28 5.04 16 22 O -0.51 -6.54 16.66 -18.75 -0.31 -6.85 16 23 O -0.52 -3.74 13.42 -39.26 -0.53 -4.27 16 24 C -0.13 -1.50 6.95 -25.92 -0.18 -1.68 16 25 H 0.05 0.58 6.26 -51.93 -0.33 0.26 16 26 H 0.08 1.05 4.46 -51.93 -0.23 0.82 16 27 H 0.07 1.13 8.03 -51.92 -0.42 0.71 16 28 H 0.04 1.03 6.60 -51.93 -0.34 0.69 16 29 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.09 1.05 4.47 -51.93 -0.23 0.82 16 32 H 0.06 0.58 6.18 -51.92 -0.32 0.26 16 33 H 0.06 0.60 6.25 -51.93 -0.32 0.28 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.85 6.30 -51.93 -0.33 0.53 16 36 H 0.41 1.27 9.10 45.56 0.41 1.69 16 37 H 0.10 1.19 6.62 -51.93 -0.34 0.85 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -37.56 307.62 -6.14 -43.69 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.08 Total: 0.34 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -0.95 Total: 11.15 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.32 Total: -51.11 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.76 Total: -25.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.56 -6.14 -43.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693050232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.282 kcal (2) G-P(sol) polarization free energy of solvation -37.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds