Wall clock time and date at job start Mon Mar 30 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00067 * 2 1 4 4 C 1.50698 * 109.46941 * 90.00596 * 3 2 1 5 5 H 1.07995 * 120.00272 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99949 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00209 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99921 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47132 * 89.99928 * 8 6 4 10 10 H 1.48500 * 109.47199 * 210.00097 * 8 6 4 11 11 H 1.48504 * 109.47193 * 330.00159 * 8 6 4 12 12 C 1.34777 * 119.99826 * 180.02562 * 2 1 3 13 13 O 1.21595 * 119.99783 * 187.73476 * 12 2 1 14 14 N 1.34771 * 120.00199 * 7.72835 * 12 2 1 15 15 C 1.46498 * 119.99790 * 7.79561 * 14 12 2 16 16 C 1.46496 * 120.00036 * 187.80059 * 14 12 2 17 17 H 1.08998 * 112.84885 * 15.82770 * 16 14 12 18 18 C 1.53782 * 113.61508 * 147.13078 * 16 14 12 19 19 C 1.53779 * 87.08402 * 139.97846 * 18 16 14 20 20 H 1.09009 * 113.68741 * 89.12301 * 19 18 16 21 21 C 1.50693 * 113.61617 * 220.01810 * 19 18 16 22 22 O 1.20829 * 119.99701 * 97.50008 * 21 19 18 23 23 O 1.34232 * 120.00112 * 277.49611 * 21 19 18 24 24 C 1.53778 * 87.08054 * 334.56922 * 19 18 16 25 25 H 1.09003 * 109.47622 * 94.95924 * 1 2 3 26 26 H 1.08997 * 109.47132 * 214.96758 * 1 2 3 27 27 H 1.09007 * 109.47087 * 334.96121 * 1 2 3 28 28 H 1.09003 * 109.47127 * 210.00209 * 3 2 1 29 29 H 1.09001 * 109.47099 * 330.00251 * 3 2 1 30 30 H 0.97002 * 119.99956 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47336 * 35.05445 * 15 14 12 32 32 H 1.09007 * 109.46929 * 155.04910 * 15 14 12 33 33 H 1.09001 * 109.47983 * 275.04957 * 15 14 12 34 34 H 1.09003 * 113.61527 * 254.52972 * 18 16 14 35 35 H 1.09001 * 113.61319 * 25.43081 * 18 16 14 36 36 H 0.96701 * 116.99939 * 180.02562 * 23 21 19 37 37 H 1.09000 * 113.61502 * 270.88165 * 24 19 18 38 38 H 1.09002 * 113.69521 * 139.98812 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1261 2.8779 1.6728 7 7 3.3459 3.2572 2.9127 8 14 3.7330 3.9292 0.2530 9 1 2.6810 4.9074 -0.1236 10 1 4.9606 4.6563 0.6647 11 1 4.0397 3.0596 -0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3465 -1.1721 0.1412 14 7 1.4742 -2.3290 -0.1580 15 6 0.0493 -2.3174 -0.4983 16 6 2.1765 -3.6035 0.0113 17 1 3.1335 -3.4948 0.5215 18 6 1.2925 -4.7221 0.5876 19 6 1.9876 -5.6731 -0.4010 20 1 2.8930 -6.1323 -0.0039 21 6 1.0544 -6.6720 -1.0352 22 8 0.5969 -6.4589 -2.1330 23 8 0.7316 -7.7986 -0.3806 24 6 2.2566 -4.4386 -1.2775 25 1 -0.3634 -0.0888 -1.0238 26 1 -0.3633 -0.8421 0.5890 27 1 -0.3634 0.9311 0.4350 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5138 30 1 3.8228 4.0831 3.0899 31 1 -0.1603 -1.4739 -1.1562 32 1 -0.2108 -3.2467 -1.0052 33 1 -0.5413 -2.2229 0.4129 34 1 1.5021 -4.9495 1.6329 35 1 0.2297 -4.5854 0.3880 36 1 0.1299 -8.4092 -0.8280 37 1 1.4575 -4.2243 -1.9871 38 1 3.2442 -4.4357 -1.7389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693050232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:21 Heat of formation + Delta-G solvation = -71.947067 kcal Electronic energy + Delta-G solvation = -21250.468328 eV Core-core repulsion = 17902.074305 eV Total energy + Delta-G solvation = -3348.394023 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03976 -41.12116 -39.18385 -37.03772 -36.87169 -35.63915 -34.31165 -30.57298 -29.11025 -27.90152 -26.80588 -25.99810 -24.57959 -22.53525 -20.75022 -20.20515 -19.15108 -19.09492 -18.32383 -17.81951 -17.17046 -17.07967 -16.69122 -16.28548 -15.90976 -15.42666 -14.98134 -14.51008 -14.42437 -14.32519 -14.00939 -13.91612 -13.55487 -13.50593 -13.12984 -12.67204 -12.57174 -12.37817 -12.34094 -12.18870 -12.00542 -11.73173 -11.68549 -11.59367 -11.38671 -10.84668 -10.79193 -9.84344 -9.00626 -8.30978 -6.35375 1.16436 1.33800 1.38396 1.49673 1.70009 2.16620 2.25619 2.34073 3.00915 3.05386 3.29241 3.41701 3.77139 3.88931 4.12982 4.22181 4.46360 4.53076 4.54344 4.64482 4.66176 4.71094 4.76369 4.82890 4.89235 4.95991 4.96668 5.07773 5.24077 5.48843 5.56693 5.62249 5.73703 6.01948 6.31042 6.65388 7.02078 7.07360 7.25994 7.69432 8.86467 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042061 B = 0.003941 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.535005 B = 7102.235848 C = 7202.584574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.623 5.623 3 C 0.243 3.757 4 C -0.533 4.533 5 H 0.024 0.976 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.250 1.250 10 H -0.282 1.282 11 H -0.256 1.256 12 C 0.695 3.305 13 O -0.636 6.636 14 N -0.621 5.621 15 C 0.051 3.949 16 C 0.130 3.870 17 H 0.099 0.901 18 C -0.116 4.116 19 C -0.099 4.099 20 H 0.150 0.850 21 C 0.500 3.500 22 O -0.547 6.547 23 O -0.509 6.509 24 C -0.129 4.129 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.427 0.573 37 H 0.093 0.907 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.134 -19.724 -9.191 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.358 5.358 3 C 0.120 3.880 4 C -0.571 4.571 5 H 0.043 0.957 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.773 3.227 9 H -0.174 1.174 10 H -0.208 1.208 11 H -0.180 1.180 12 C 0.398 3.602 13 O -0.518 6.518 14 N -0.357 5.357 15 C -0.090 4.090 16 C 0.026 3.974 17 H 0.117 0.883 18 C -0.155 4.155 19 C -0.118 4.118 20 H 0.167 0.833 21 C 0.344 3.656 22 O -0.438 6.438 23 O -0.322 6.322 24 C -0.168 4.168 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.289 0.711 37 H 0.111 0.889 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.326 -19.239 -9.109 23.240 hybrid contribution 0.216 0.328 -0.267 0.475 sum -9.110 -18.911 -9.376 22.990 Atomic orbital electron populations 1.22996 0.78382 1.04550 1.02463 1.47010 1.07784 1.04598 1.76442 1.19211 0.92225 0.81445 0.95130 1.21586 1.36594 1.06449 0.92506 0.95748 1.25883 0.95323 0.99000 0.98721 1.70062 1.42955 1.24481 1.21344 0.85671 0.78787 0.78912 0.79305 1.17394 1.20789 1.17983 1.16262 0.84777 0.81415 0.77775 1.90830 1.15023 1.86588 1.59315 1.46905 1.11324 1.03321 1.74164 1.22977 0.79423 1.04996 1.01579 1.22408 0.96956 0.80529 0.97521 0.88273 1.23378 1.00350 0.91619 1.00123 1.22259 0.99308 0.91461 0.98790 0.83251 1.23243 0.78859 0.80823 0.82680 1.90721 1.53435 1.77173 1.22467 1.84522 1.64245 1.31512 1.51951 1.23428 1.03711 0.92423 0.97280 0.89591 0.88075 0.92154 0.96525 0.93151 0.92327 0.88381 0.89958 0.90614 0.88070 0.87883 0.71094 0.88853 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.65 8.64 127.77 1.10 2.75 16 2 N -0.62 -26.28 2.86 -869.30 -2.48 -28.76 16 3 C 0.24 12.17 4.15 85.63 0.36 12.53 16 4 C -0.53 -32.23 9.94 25.60 0.25 -31.97 16 5 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 6 C 0.01 0.49 5.47 84.66 0.46 0.96 16 7 N -0.95 -60.98 13.96 21.45 0.30 -60.69 16 8 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 9 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 12 C 0.69 29.92 8.10 179.06 1.45 31.38 16 13 O -0.64 -33.99 15.59 -4.01 -0.06 -34.06 16 14 N -0.62 -18.81 3.08 -837.65 -2.58 -21.39 16 15 C 0.05 1.02 7.40 127.77 0.95 1.97 16 16 C 0.13 3.33 4.13 45.52 0.19 3.52 16 17 H 0.10 3.04 7.39 -2.39 -0.02 3.02 16 18 C -0.12 -1.96 6.98 31.12 0.22 -1.75 16 19 C -0.10 -1.56 4.26 -11.02 -0.05 -1.60 16 20 H 0.15 1.76 8.14 -2.38 -0.02 1.74 16 21 C 0.50 8.32 7.85 71.23 0.56 8.88 16 22 O -0.55 -12.70 16.66 21.96 0.37 -12.33 16 23 O -0.51 -5.70 13.42 -51.44 -0.69 -6.39 16 24 C -0.13 -2.75 6.95 31.12 0.22 -2.54 16 25 H 0.09 1.85 6.26 -2.39 -0.01 1.83 16 26 H 0.10 2.45 4.46 -2.39 -0.01 2.44 16 27 H 0.06 1.86 8.03 -2.38 -0.02 1.85 16 28 H 0.02 0.91 6.60 -2.39 -0.02 0.89 16 29 H 0.05 2.26 7.50 -2.39 -0.02 2.24 16 30 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.10 1.89 4.47 -2.39 -0.01 1.88 16 32 H 0.08 1.33 6.18 -2.38 -0.01 1.32 16 33 H 0.08 1.31 6.25 -2.39 -0.01 1.29 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.54 6.30 -2.39 -0.02 1.53 16 36 H 0.43 1.27 9.10 -74.06 -0.67 0.59 16 37 H 0.09 2.11 6.62 -2.39 -0.02 2.10 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -86.24 307.62 2.81 -83.42 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.37 Total: 9.12 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 5.71 Total: 24.12 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -4.76 Total: -110.84 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.39 Total: -52.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -86.24 2.81 -83.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693050232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.475 kcal (2) G-P(sol) polarization free energy of solvation -86.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds