Wall clock time and date at job start Mon Mar 30 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47349 * 2 1 4 4 C 1.46498 * 119.99805 * 270.00527 * 3 2 1 5 5 C 1.50706 * 109.47158 * 269.99444 * 4 3 2 6 6 H 1.08000 * 119.99373 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99524 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00354 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47095 * 89.99880 * 9 7 5 11 11 H 1.48497 * 109.47141 * 209.99988 * 9 7 5 12 12 H 1.48503 * 109.46925 * 330.00164 * 9 7 5 13 13 C 1.34775 * 120.00000 * 89.99933 * 3 2 1 14 14 O 1.21586 * 119.99971 * 180.02562 * 13 3 2 15 15 N 1.34777 * 120.00215 * 0.02562 * 13 3 2 16 16 C 1.46495 * 120.00115 * 179.97438 * 15 13 3 17 17 C 1.53780 * 113.61549 * 205.00001 * 16 15 13 18 18 C 1.53776 * 87.08391 * 219.93712 * 17 16 15 19 19 C 1.50700 * 113.61608 * 139.98003 * 18 17 16 20 20 O 1.20822 * 119.99958 * 1.52893 * 19 18 17 21 21 O 1.34234 * 120.00068 * 181.53085 * 19 18 17 22 22 C 1.53786 * 87.17529 * 25.38941 * 18 17 16 23 23 H 1.09003 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47244 * 299.99606 * 1 2 3 25 25 H 1.08992 * 109.47112 * 60.00015 * 1 2 3 26 26 H 1.08996 * 109.46898 * 239.99941 * 2 1 3 27 27 H 1.09006 * 109.47073 * 120.00079 * 2 1 3 28 28 H 1.08995 * 109.47634 * 29.99602 * 4 3 2 29 29 H 1.09002 * 109.47099 * 150.00007 * 4 3 2 30 30 H 0.96995 * 119.99934 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99385 * 359.97438 * 15 13 3 32 32 H 1.09003 * 112.85176 * 336.20054 * 16 15 13 33 33 H 1.08995 * 113.61228 * 105.38674 * 17 16 15 34 34 H 1.09003 * 113.61203 * 334.48789 * 17 16 15 35 35 H 1.09000 * 113.61979 * 270.80261 * 18 17 16 36 36 H 0.96698 * 117.00153 * 179.97438 * 21 19 18 37 37 H 1.08999 * 113.61104 * 89.15358 * 22 18 17 38 38 H 1.08994 * 113.61609 * 220.06183 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7039 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8776 8 7 5.3915 2.1842 -3.2570 9 14 3.0134 3.4371 -3.9281 10 1 3.1171 4.8569 -3.5059 11 1 3.4064 3.3150 -5.3549 12 1 1.6135 2.9713 -3.7586 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1630 1.1672 15 7 2.0189 1.3810 2.3344 16 6 2.2636 2.0714 3.6031 17 6 2.5595 1.1205 4.7749 18 6 1.6974 2.0506 5.6447 19 6 0.8118 1.3171 6.6187 20 8 0.8483 0.1109 6.6781 21 8 -0.0176 2.0038 7.4202 22 6 0.9776 2.4677 4.3512 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 5.7175 2.5747 -4.0828 31 1 1.6955 0.4665 2.3344 32 1 2.9816 2.8863 3.5100 33 1 3.6097 1.0999 5.0658 34 1 2.1350 0.1247 4.6469 35 1 2.2609 2.8589 6.1108 36 1 -0.5664 1.4896 8.0280 37 1 0.1199 1.8409 4.1073 38 1 0.7527 3.5330 4.3008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693395537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:46 Heat of formation + Delta-G solvation = -95.509767 kcal Electronic energy + Delta-G solvation = -20940.074916 eV Core-core repulsion = 17590.659138 eV Total energy + Delta-G solvation = -3349.415778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96918 -39.64429 -38.10190 -36.31258 -35.30535 -33.28186 -32.34035 -30.30044 -27.90208 -26.48832 -25.93532 -23.02989 -22.82713 -21.48846 -20.01334 -19.13327 -18.42184 -17.42080 -17.14538 -16.83468 -16.06304 -15.65143 -15.25483 -14.62607 -14.47525 -13.89425 -13.64599 -13.42265 -13.17513 -12.75956 -12.68506 -12.38811 -12.27014 -11.88635 -11.80360 -11.57867 -11.39664 -11.36829 -10.97534 -10.88930 -10.73452 -10.55148 -10.45166 -10.13090 -9.52375 -9.29247 -8.70969 -8.54556 -7.63077 -6.04429 -4.02402 1.91014 2.72107 3.30519 3.34813 3.39328 3.41665 3.83619 4.14196 4.23618 4.43047 4.47863 4.69493 4.72933 5.09234 5.25745 5.28371 5.42619 5.46068 5.52809 5.54866 5.64210 5.72312 5.77817 5.93792 6.10381 6.16387 6.20908 6.39954 6.65268 6.87211 6.94895 7.34595 7.59939 7.61786 7.70842 8.53226 8.63237 8.99585 9.31160 9.56922 11.09216 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.003973 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.745995 B = 7045.470651 C = 7284.129810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.608 5.608 4 C 0.232 3.768 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.704 3.296 14 O -0.586 6.586 15 N -0.744 5.744 16 C 0.150 3.850 17 C -0.128 4.128 18 C -0.110 4.110 19 C 0.491 3.509 20 O -0.516 6.516 21 O -0.515 6.515 22 C -0.136 4.136 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.393 0.607 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.408 0.592 37 H 0.087 0.913 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 -3.428 17.496 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.342 5.342 4 C 0.111 3.889 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.405 3.595 14 O -0.463 6.463 15 N -0.401 5.401 16 C 0.043 3.957 17 C -0.166 4.166 18 C -0.130 4.130 19 C 0.334 3.666 20 O -0.404 6.404 21 O -0.327 6.327 22 C -0.175 4.175 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.229 0.771 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.266 0.734 37 H 0.106 0.894 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.152 -2.632 17.014 20.513 hybrid contribution -0.986 -0.335 -0.117 1.048 sum -12.138 -2.967 16.897 21.015 Atomic orbital electron populations 1.22254 0.96891 1.01462 1.02314 1.21342 0.93261 0.84202 1.02740 1.47197 1.67951 1.13271 1.05815 1.19539 0.97060 0.93175 0.79162 1.21388 0.95501 1.32658 1.06969 0.90815 1.24855 0.94997 0.95867 0.97389 1.69902 1.15149 1.45183 1.23578 0.86845 0.81458 0.81646 0.79683 1.19928 1.21169 1.19091 1.15908 0.78538 0.84727 0.80289 1.90877 1.52423 1.16991 1.86021 1.45226 1.73424 1.17150 1.04269 1.22128 0.96569 0.95898 0.81151 1.23407 1.00561 0.99007 0.93667 1.22318 0.97311 1.00573 0.92759 1.23350 0.78090 0.86317 0.78870 1.90717 1.66324 1.15974 1.67357 1.84570 1.52271 1.45537 1.50324 1.23550 0.98992 1.03219 0.91760 0.92078 0.93046 0.92129 0.89596 0.92081 0.95322 0.94571 0.92643 0.77147 0.85986 0.89506 0.88262 0.85249 0.73379 0.89410 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.69 5.89 -4.04 -0.02 1.67 16 3 N -0.61 -12.52 2.46 -180.80 -0.44 -12.96 16 4 C 0.23 5.70 4.23 -5.19 -0.02 5.68 16 5 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 9 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.70 14.48 8.28 -86.92 -0.72 13.76 16 14 O -0.59 -14.60 15.52 5.29 0.08 -14.51 16 15 N -0.74 -11.11 5.23 -57.79 -0.30 -11.42 16 16 C 0.15 1.86 4.24 -67.03 -0.28 1.58 16 17 C -0.13 -1.26 7.15 -25.92 -0.19 -1.45 16 18 C -0.11 -0.96 4.25 -90.96 -0.39 -1.35 16 19 C 0.49 4.73 7.85 36.01 0.28 5.01 16 20 O -0.52 -6.45 16.67 -18.75 -0.31 -6.76 16 21 O -0.52 -3.80 13.42 -39.27 -0.53 -4.33 16 22 C -0.14 -1.37 7.45 -25.82 -0.19 -1.57 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.40 8.07 -51.93 -0.42 0.99 16 27 H 0.06 0.80 6.36 -51.93 -0.33 0.47 16 28 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 29 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.39 4.93 6.46 -40.82 -0.26 4.67 16 32 H 0.12 1.72 7.46 -51.93 -0.39 1.33 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.03 7.43 -51.93 -0.39 0.64 16 35 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.41 1.32 9.10 45.56 0.41 1.73 16 37 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -36.79 322.64 -6.77 -43.56 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.64 Total: 3.75 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.59 Total: 7.94 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.03 Total: -51.53 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.76 Total: -25.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.79 -6.77 -43.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693395537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.949 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds