Wall clock time and date at job start Mon Mar 30 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47349 * 2 1 4 4 C 1.46498 * 119.99805 * 270.00527 * 3 2 1 5 5 C 1.50706 * 109.47158 * 269.99444 * 4 3 2 6 6 H 1.08000 * 119.99373 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99524 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00354 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47095 * 89.99880 * 9 7 5 11 11 H 1.48497 * 109.47141 * 209.99988 * 9 7 5 12 12 H 1.48503 * 109.46925 * 330.00164 * 9 7 5 13 13 C 1.34775 * 120.00000 * 89.99933 * 3 2 1 14 14 O 1.21586 * 119.99971 * 180.02562 * 13 3 2 15 15 N 1.34777 * 120.00215 * 0.02562 * 13 3 2 16 16 C 1.46495 * 120.00115 * 179.97438 * 15 13 3 17 17 C 1.53780 * 113.61549 * 205.00001 * 16 15 13 18 18 C 1.53776 * 87.08391 * 219.93712 * 17 16 15 19 19 C 1.50700 * 113.61608 * 139.98003 * 18 17 16 20 20 O 1.20822 * 119.99958 * 1.52893 * 19 18 17 21 21 O 1.34234 * 120.00068 * 181.53085 * 19 18 17 22 22 C 1.53786 * 87.17529 * 25.38941 * 18 17 16 23 23 H 1.09003 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47244 * 299.99606 * 1 2 3 25 25 H 1.08992 * 109.47112 * 60.00015 * 1 2 3 26 26 H 1.08996 * 109.46898 * 239.99941 * 2 1 3 27 27 H 1.09006 * 109.47073 * 120.00079 * 2 1 3 28 28 H 1.08995 * 109.47634 * 29.99602 * 4 3 2 29 29 H 1.09002 * 109.47099 * 150.00007 * 4 3 2 30 30 H 0.96995 * 119.99934 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99385 * 359.97438 * 15 13 3 32 32 H 1.09003 * 112.85176 * 336.20054 * 16 15 13 33 33 H 1.08995 * 113.61228 * 105.38674 * 17 16 15 34 34 H 1.09003 * 113.61203 * 334.48789 * 17 16 15 35 35 H 1.09000 * 113.61979 * 270.80261 * 18 17 16 36 36 H 0.96698 * 117.00153 * 179.97438 * 21 19 18 37 37 H 1.08999 * 113.61104 * 89.15358 * 22 18 17 38 38 H 1.08994 * 113.61609 * 220.06183 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7039 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8776 8 7 5.3915 2.1842 -3.2570 9 14 3.0134 3.4371 -3.9281 10 1 3.1171 4.8569 -3.5059 11 1 3.4064 3.3150 -5.3549 12 1 1.6135 2.9713 -3.7586 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1630 1.1672 15 7 2.0189 1.3810 2.3344 16 6 2.2636 2.0714 3.6031 17 6 2.5595 1.1205 4.7749 18 6 1.6974 2.0506 5.6447 19 6 0.8118 1.3171 6.6187 20 8 0.8483 0.1109 6.6781 21 8 -0.0176 2.0038 7.4202 22 6 0.9776 2.4677 4.3512 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 5.7175 2.5747 -4.0828 31 1 1.6955 0.4665 2.3344 32 1 2.9816 2.8863 3.5100 33 1 3.6097 1.0999 5.0658 34 1 2.1350 0.1247 4.6469 35 1 2.2609 2.8589 6.1108 36 1 -0.5664 1.4896 8.0280 37 1 0.1199 1.8409 4.1073 38 1 0.7527 3.5330 4.3008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693395537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:46 Heat of formation + Delta-G solvation = -123.140581 kcal Electronic energy + Delta-G solvation = -20941.273078 eV Core-core repulsion = 17590.659138 eV Total energy + Delta-G solvation = -3350.613940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83563 -40.97169 -39.11993 -37.05793 -36.89278 -35.04645 -34.08110 -31.79372 -29.58611 -27.58261 -26.75726 -24.59678 -24.26617 -22.60054 -21.13372 -20.36151 -19.18289 -19.09378 -18.67581 -18.17210 -17.09832 -16.79830 -16.46060 -16.20077 -15.78087 -15.33351 -15.10063 -14.74877 -14.46545 -14.06083 -13.91378 -13.57127 -13.49064 -13.30183 -13.13670 -12.64395 -12.54361 -12.40682 -12.35852 -12.27902 -12.02699 -11.92842 -11.76212 -11.70757 -11.38612 -11.01439 -10.79725 -10.05816 -9.26937 -8.30851 -6.35340 1.17314 1.34924 1.39602 1.47808 1.80212 2.21907 2.31307 2.34065 3.03192 3.15890 3.32516 3.41283 3.79795 3.92572 4.08947 4.38341 4.46026 4.48884 4.59610 4.66108 4.70476 4.79341 4.88589 4.91243 4.98323 4.99256 5.00374 5.20691 5.36757 5.50157 5.61194 5.65520 5.69309 6.10294 6.33486 6.65885 7.01706 7.17201 7.26720 7.75533 8.86418 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.003973 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.745995 B = 7045.470651 C = 7284.129810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.617 5.617 4 C 0.243 3.757 5 C -0.534 4.534 6 H 0.026 0.974 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.237 1.237 13 C 0.697 3.303 14 O -0.638 6.638 15 N -0.724 5.724 16 C 0.131 3.869 17 C -0.118 4.118 18 C -0.099 4.099 19 C 0.499 3.501 20 O -0.547 6.547 21 O -0.511 6.511 22 C -0.126 4.126 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.018 0.982 30 H 0.268 0.732 31 H 0.407 0.593 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.427 0.573 37 H 0.092 0.908 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.357 -3.739 18.515 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.351 5.351 4 C 0.120 3.880 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.160 1.160 13 C 0.398 3.602 14 O -0.520 6.520 15 N -0.381 5.381 16 C 0.025 3.975 17 C -0.157 4.157 18 C -0.119 4.119 19 C 0.343 3.657 20 O -0.438 6.438 21 O -0.324 6.324 22 C -0.165 4.165 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.245 0.755 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.169 0.831 36 H 0.289 0.711 37 H 0.110 0.890 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.709 -3.006 18.105 22.908 hybrid contribution -0.149 -0.296 -0.306 0.451 sum -13.858 -3.302 17.799 22.798 Atomic orbital electron populations 1.22157 0.94038 1.03509 1.02070 1.21650 0.95507 0.81479 1.03479 1.47197 1.68207 1.15039 1.04689 1.19173 0.94540 0.92783 0.81514 1.21621 0.97234 1.31896 1.06572 0.95551 1.25860 0.96743 0.97244 0.98980 1.70057 1.17476 1.46743 1.24508 0.85695 0.80465 0.79005 0.77650 1.20162 1.20078 1.16044 1.16173 0.78211 0.84337 0.81458 1.90829 1.54770 1.19430 1.86945 1.45063 1.72131 1.17524 1.03396 1.22374 0.98068 0.96394 0.80629 1.23327 1.01502 0.98561 0.92270 1.22279 0.96814 1.00551 0.92228 1.23306 0.77918 0.85714 0.78786 1.90716 1.67348 1.17274 1.68462 1.84524 1.51999 1.45585 1.50289 1.23443 0.97846 1.03506 0.91724 0.88820 0.92417 0.93233 0.90705 0.89633 0.93290 0.96357 0.92335 0.75521 0.88066 0.88620 0.88300 0.83056 0.71144 0.88977 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.85 16 2 C 0.10 3.01 5.89 86.38 0.51 3.52 16 3 N -0.62 -25.42 2.46 -844.20 -2.07 -27.50 16 4 C 0.24 12.00 4.23 85.64 0.36 12.36 16 5 C -0.53 -31.94 9.94 25.60 0.25 -31.69 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.56 5.47 84.65 0.46 1.02 16 8 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 9 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 13 C 0.70 28.95 8.28 179.05 1.48 30.43 16 14 O -0.64 -32.80 15.52 -3.99 -0.06 -32.86 16 15 N -0.72 -21.13 5.23 -455.01 -2.38 -23.51 16 16 C 0.13 3.17 4.24 45.58 0.19 3.36 16 17 C -0.12 -2.14 7.15 31.12 0.22 -1.91 16 18 C -0.10 -1.51 4.25 -11.01 -0.05 -1.56 16 19 C 0.50 8.33 7.85 71.24 0.56 8.88 16 20 O -0.55 -12.55 16.67 21.98 0.37 -12.18 16 21 O -0.51 -6.03 13.42 -51.46 -0.69 -6.72 16 22 C -0.13 -2.32 7.45 31.18 0.23 -2.08 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 27 H 0.09 2.08 6.36 -2.38 -0.02 2.06 16 28 H 0.05 2.22 7.13 -2.39 -0.02 2.20 16 29 H 0.02 0.97 6.85 -2.39 -0.02 0.96 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.41 9.49 6.46 -92.71 -0.60 8.89 16 32 H 0.10 2.91 7.46 -2.39 -0.02 2.90 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.85 7.43 -2.39 -0.02 1.83 16 35 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.43 1.51 9.10 -74.06 -0.67 0.84 16 37 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -83.18 322.64 2.07 -81.11 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.24 Total: 15.75 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 4.97 Total: 19.48 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.15 Total: -111.31 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.39 Total: -51.76 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -83.18 2.07 -81.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693395537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.033 kcal (2) G-P(sol) polarization free energy of solvation -83.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds