Wall clock time and date at job start Mon Mar 30 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99901 * 2 1 4 4 H 1.48497 * 109.46963 * 274.83450 * 3 2 1 5 5 H 1.48497 * 109.46989 * 34.83291 * 3 2 1 6 6 H 1.48493 * 109.47010 * 154.83281 * 3 2 1 7 7 C 1.37870 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00214 * 4.69607 * 7 2 1 9 9 C 1.50700 * 120.00599 * 184.69219 * 7 2 1 10 10 C 1.53005 * 115.55937 * 91.39320 * 9 7 2 11 11 N 1.46898 * 109.47292 * 32.70107 * 10 9 7 12 12 C 1.47007 * 111.00154 * 288.38368 * 11 10 9 13 13 C 1.53096 * 109.25926 * 177.60853 * 12 11 10 14 14 O 1.43009 * 109.26088 * 56.84622 * 13 12 11 15 15 C 1.43021 * 113.73663 * 301.33156 * 14 13 12 16 16 C 1.47012 * 110.99936 * 164.74513 * 11 10 9 17 17 C 1.53000 * 109.50859 * 302.32829 * 16 11 10 18 18 N 1.46898 * 109.47156 * 71.27935 * 17 16 11 19 19 C 1.53004 * 109.50708 * 62.46132 * 16 11 10 20 20 O 1.42902 * 109.46850 * 185.00687 * 19 16 11 21 21 C 1.52998 * 117.50016 * 305.70931 * 9 7 2 22 22 C 1.52996 * 117.50353 * 237.08334 * 9 7 2 23 23 H 0.97003 * 119.99947 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46932 * 152.70243 * 10 9 7 25 25 H 1.08999 * 109.47223 * 272.70083 * 10 9 7 26 26 H 1.09004 * 109.50675 * 297.54107 * 12 11 10 27 27 H 1.09006 * 109.51041 * 57.66953 * 12 11 10 28 28 H 1.08998 * 109.50807 * 176.78399 * 13 12 11 29 29 H 1.09000 * 109.50679 * 296.90890 * 13 12 11 30 30 H 1.09003 * 109.50160 * 178.60471 * 15 14 13 31 31 H 1.08992 * 109.50521 * 298.69015 * 15 14 13 32 32 H 1.08997 * 109.47025 * 191.27808 * 17 16 11 33 33 H 1.08997 * 109.47235 * 311.28103 * 17 16 11 34 34 H 1.00903 * 110.99937 * 56.04842 * 18 17 16 35 35 H 1.00897 * 111.00403 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.46634 * 305.00169 * 19 16 11 37 37 H 1.08995 * 109.47223 * 65.00200 * 19 16 11 38 38 H 0.96704 * 113.99660 * 184.99797 * 20 19 16 39 39 H 1.08999 * 117.49986 * 145.01669 * 21 9 7 40 40 H 1.08998 * 117.49614 * 359.97438 * 21 9 7 41 41 H 1.08999 * 117.49668 * 0.02562 * 22 9 7 42 42 H 1.08998 * 117.50105 * 214.97671 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3945 2.1055 -1.3951 5 1 1.5014 2.6210 0.7997 6 1 3.5940 1.4129 0.5954 7 6 2.0046 -1.1939 0.0005 8 1 1.4674 -2.1278 -0.0756 9 6 3.5078 -1.1961 0.1073 10 6 4.0686 -1.2864 1.5280 11 7 3.1661 -2.0930 2.3603 12 6 1.9220 -1.3644 2.6474 13 6 0.9884 -2.2614 3.4645 14 8 1.6590 -2.6784 4.6568 15 6 2.8746 -3.3918 4.4141 16 6 3.8272 -2.5062 3.6067 17 6 5.0975 -3.2919 3.2750 18 7 6.1133 -2.3766 2.7382 19 6 4.1914 -1.2670 4.4269 20 8 4.9365 -1.6616 5.5807 21 6 4.2894 -0.3611 -0.9089 22 6 4.2943 -1.8879 -1.0079 23 1 -0.4850 0.8401 0.0004 24 1 5.0529 -1.7539 1.5010 25 1 4.1535 -0.2848 1.9495 26 1 2.1510 -0.4632 3.2164 27 1 1.4361 -1.0905 1.7108 28 1 0.0886 -1.7057 3.7284 29 1 0.7164 -3.1367 2.8747 30 1 3.3388 -3.6537 5.3649 31 1 2.6574 -4.3004 3.8526 32 1 5.4777 -3.7665 4.1796 33 1 4.8685 -4.0563 2.5325 34 1 6.2962 -1.6216 3.3822 35 1 6.9624 -2.8719 2.5108 36 1 4.7941 -0.5928 3.8184 37 1 3.2800 -0.7575 4.7396 38 1 5.1360 -0.9354 6.1873 39 1 5.2031 0.1239 -0.5654 40 1 3.7164 0.1895 -1.6549 41 1 3.7245 -2.3411 -1.8191 42 1 5.2112 -2.4073 -0.7295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693932868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:43 Heat of formation + Delta-G solvation = -23.782462 kcal Electronic energy + Delta-G solvation = -23617.564703 eV Core-core repulsion = 20407.092349 eV Total energy + Delta-G solvation = -3210.472354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04581 -36.98981 -36.65525 -35.07310 -33.32431 -32.24158 -30.50183 -27.97329 -26.02445 -25.73549 -24.56438 -23.38635 -21.55140 -21.33933 -18.86545 -18.25601 -17.41025 -16.63005 -15.93760 -15.74355 -15.27102 -14.88762 -14.78039 -14.27237 -14.21328 -13.86072 -13.38526 -13.19088 -12.94337 -12.71587 -12.39052 -12.18975 -11.79515 -11.55469 -11.31642 -11.02424 -10.84764 -10.63526 -10.39152 -10.21290 -10.03850 -10.00583 -9.60574 -9.44210 -9.06714 -8.94145 -8.42202 -8.13337 -7.85957 -7.29775 -6.13359 -4.01327 3.27930 3.38494 3.46402 4.26312 4.41422 4.48763 4.61499 4.70809 5.12006 5.17012 5.19018 5.29923 5.37483 5.70946 5.76458 5.84941 5.94850 5.99998 6.03866 6.09028 6.13496 6.23327 6.31449 6.35263 6.53316 6.60845 6.68907 6.83816 6.91442 7.07042 7.15418 7.25132 7.29773 7.47085 7.50955 7.64633 7.79046 7.87493 8.09234 8.22843 8.63633 8.92882 9.46631 10.95544 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.009164 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.433053 B = 3054.820743 C = 3662.291234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.066 3.934 3 Si 0.872 3.128 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.010 3.990 10 C 0.050 3.950 11 N -0.482 5.482 12 C -0.035 4.035 13 C 0.065 3.935 14 O -0.396 6.396 15 C 0.083 3.917 16 C 0.078 3.922 17 C 0.082 3.918 18 N -0.831 5.831 19 C 0.047 3.953 20 O -0.573 6.573 21 C -0.207 4.207 22 C -0.177 4.177 23 H 0.265 0.735 24 H 0.138 0.862 25 H 0.006 0.994 26 H 0.010 0.990 27 H 0.187 0.813 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.339 0.661 35 H 0.335 0.665 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.371 0.629 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 -3.298 8.112 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.135 4.135 3 Si 0.701 3.299 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.495 4.495 8 H 0.101 0.899 9 C 0.009 3.991 10 C -0.078 4.078 11 N -0.206 5.206 12 C -0.160 4.160 13 C -0.011 4.011 14 O -0.315 6.315 15 C 0.005 3.995 16 C -0.014 4.014 17 C -0.049 4.049 18 N -0.361 5.361 19 C -0.033 4.033 20 O -0.377 6.377 21 C -0.245 4.245 22 C -0.214 4.214 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.203 0.797 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.917 -4.042 7.177 12.139 hybrid contribution 1.179 2.236 1.210 2.803 sum 10.095 -1.806 8.388 13.249 Atomic orbital electron populations 1.69917 1.05934 1.27067 1.50716 1.24989 0.94763 0.98744 0.95007 0.86955 0.81091 0.83689 0.78172 1.20795 1.22614 1.17780 1.20196 0.87624 0.94261 1.47446 0.89887 1.19459 0.93884 0.98121 0.87620 1.22923 0.98831 0.94132 0.91919 1.62357 1.04443 1.43149 1.10686 1.24342 0.92160 0.93061 1.06451 1.22757 0.94974 0.98261 0.85143 1.87889 1.36467 1.75076 1.32040 1.22445 0.84630 0.93478 0.98958 1.21774 0.94346 0.94277 0.91010 1.21623 0.90723 0.94613 0.97938 1.59049 1.13657 1.14698 1.48713 1.22994 0.94927 0.98736 0.86620 1.86420 1.76565 1.39052 1.35680 1.22902 1.02016 0.93968 1.05624 1.22830 1.01463 0.93348 1.03755 0.92543 0.84546 0.97560 0.97223 0.79665 0.89494 0.92596 0.89277 0.92841 0.94697 0.89980 0.84678 0.85265 0.93182 0.92914 0.78278 0.91227 0.90232 0.90220 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.89 55.43 0.77 -24.78 16 2 C 0.07 1.78 4.00 -17.82 -0.07 1.71 16 3 Si 0.87 21.34 25.05 -169.99 -4.26 17.08 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.25 -5.99 5.54 56.52 0.31 -5.68 16 7 C -0.46 -11.95 6.16 -34.44 -0.21 -12.16 16 8 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 9 C 0.01 0.24 1.32 -155.66 -0.21 0.03 16 10 C 0.05 1.02 3.99 -3.82 -0.02 1.01 16 11 N -0.48 -9.66 4.27 -218.68 -0.93 -10.60 16 12 C -0.03 -0.76 4.76 -3.72 -0.02 -0.78 16 13 C 0.06 1.30 7.01 37.21 0.26 1.56 16 14 O -0.40 -7.50 10.20 -35.23 -0.36 -7.86 16 15 C 0.08 1.38 5.60 37.21 0.21 1.59 16 16 C 0.08 1.30 0.49 -131.49 -0.06 1.23 16 17 C 0.08 1.17 5.36 -3.82 -0.02 1.15 16 18 N -0.83 -10.78 5.97 -10.37 -0.06 -10.84 16 19 C 0.05 0.74 4.40 37.16 0.16 0.91 16 20 O -0.57 -7.53 12.33 -35.23 -0.43 -7.96 16 21 C -0.21 -4.47 6.99 -26.73 -0.19 -4.66 16 22 C -0.18 -3.64 9.88 -26.73 -0.26 -3.91 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.14 2.56 3.93 -59.92 -0.24 2.32 16 25 H 0.01 0.14 6.43 -51.93 -0.33 -0.20 16 26 H 0.01 0.22 6.50 -51.93 -0.34 -0.12 16 27 H 0.19 4.68 2.66 -52.12 -0.14 4.54 16 28 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.36 7.75 -51.93 -0.40 0.96 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.34 4.29 6.75 -39.29 -0.27 4.02 16 35 H 0.33 3.51 9.08 -39.29 -0.36 3.16 16 36 H 0.05 0.81 5.29 -51.93 -0.27 0.53 16 37 H 0.05 0.94 6.21 -51.93 -0.32 0.62 16 38 H 0.37 3.36 9.12 45.56 0.42 3.78 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.81 6.40 -51.93 -0.33 1.47 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -28.83 302.73 -6.74 -35.56 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -5.59 Total: 17.16 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.43 Total: -12.32 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.23 Total: -46.22 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.79 Total: -15.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.26 Total: 17.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.83 -6.74 -35.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693932868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.780 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds