Wall clock time and date at job start Mon Mar 30 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99901 * 2 1 4 4 H 1.48497 * 109.46963 * 274.83450 * 3 2 1 5 5 H 1.48497 * 109.46989 * 34.83291 * 3 2 1 6 6 H 1.48493 * 109.47010 * 154.83281 * 3 2 1 7 7 C 1.37870 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00214 * 4.69607 * 7 2 1 9 9 C 1.50700 * 120.00599 * 184.69219 * 7 2 1 10 10 C 1.53005 * 115.55937 * 91.39320 * 9 7 2 11 11 N 1.46898 * 109.47292 * 32.70107 * 10 9 7 12 12 C 1.47007 * 111.00154 * 288.38368 * 11 10 9 13 13 C 1.53096 * 109.25926 * 177.60853 * 12 11 10 14 14 O 1.43009 * 109.26088 * 56.84622 * 13 12 11 15 15 C 1.43021 * 113.73663 * 301.33156 * 14 13 12 16 16 C 1.47012 * 110.99936 * 164.74513 * 11 10 9 17 17 C 1.53000 * 109.50859 * 302.32829 * 16 11 10 18 18 N 1.46898 * 109.47156 * 71.27935 * 17 16 11 19 19 C 1.53004 * 109.50708 * 62.46132 * 16 11 10 20 20 O 1.42902 * 109.46850 * 185.00687 * 19 16 11 21 21 C 1.52998 * 117.50016 * 305.70931 * 9 7 2 22 22 C 1.52996 * 117.50353 * 237.08334 * 9 7 2 23 23 H 0.97003 * 119.99947 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46932 * 152.70243 * 10 9 7 25 25 H 1.08999 * 109.47223 * 272.70083 * 10 9 7 26 26 H 1.09004 * 109.50675 * 297.54107 * 12 11 10 27 27 H 1.09006 * 109.51041 * 57.66953 * 12 11 10 28 28 H 1.08998 * 109.50807 * 176.78399 * 13 12 11 29 29 H 1.09000 * 109.50679 * 296.90890 * 13 12 11 30 30 H 1.09003 * 109.50160 * 178.60471 * 15 14 13 31 31 H 1.08992 * 109.50521 * 298.69015 * 15 14 13 32 32 H 1.08997 * 109.47025 * 191.27808 * 17 16 11 33 33 H 1.08997 * 109.47235 * 311.28103 * 17 16 11 34 34 H 1.00903 * 110.99937 * 56.04842 * 18 17 16 35 35 H 1.00897 * 111.00403 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.46634 * 305.00169 * 19 16 11 37 37 H 1.08995 * 109.47223 * 65.00200 * 19 16 11 38 38 H 0.96704 * 113.99660 * 184.99797 * 20 19 16 39 39 H 1.08999 * 117.49986 * 145.01669 * 21 9 7 40 40 H 1.08998 * 117.49614 * 359.97438 * 21 9 7 41 41 H 1.08999 * 117.49668 * 0.02562 * 22 9 7 42 42 H 1.08998 * 117.50105 * 214.97671 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3945 2.1055 -1.3951 5 1 1.5014 2.6210 0.7997 6 1 3.5940 1.4129 0.5954 7 6 2.0046 -1.1939 0.0005 8 1 1.4674 -2.1278 -0.0756 9 6 3.5078 -1.1961 0.1073 10 6 4.0686 -1.2864 1.5280 11 7 3.1661 -2.0930 2.3603 12 6 1.9220 -1.3644 2.6474 13 6 0.9884 -2.2614 3.4645 14 8 1.6590 -2.6784 4.6568 15 6 2.8746 -3.3918 4.4141 16 6 3.8272 -2.5062 3.6067 17 6 5.0975 -3.2919 3.2750 18 7 6.1133 -2.3766 2.7382 19 6 4.1914 -1.2670 4.4269 20 8 4.9365 -1.6616 5.5807 21 6 4.2894 -0.3611 -0.9089 22 6 4.2943 -1.8879 -1.0079 23 1 -0.4850 0.8401 0.0004 24 1 5.0529 -1.7539 1.5010 25 1 4.1535 -0.2848 1.9495 26 1 2.1510 -0.4632 3.2164 27 1 1.4361 -1.0905 1.7108 28 1 0.0886 -1.7057 3.7284 29 1 0.7164 -3.1367 2.8747 30 1 3.3388 -3.6537 5.3649 31 1 2.6574 -4.3004 3.8526 32 1 5.4777 -3.7665 4.1796 33 1 4.8685 -4.0563 2.5325 34 1 6.2962 -1.6216 3.3822 35 1 6.9624 -2.8719 2.5108 36 1 4.7941 -0.5928 3.8184 37 1 3.2800 -0.7575 4.7396 38 1 5.1360 -0.9354 6.1873 39 1 5.2031 0.1239 -0.5654 40 1 3.7164 0.1895 -1.6549 41 1 3.7245 -2.3411 -1.8191 42 1 5.2112 -2.4073 -0.7295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693932868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:43 Heat of formation + Delta-G solvation = -49.062571 kcal Electronic energy + Delta-G solvation = -23618.660931 eV Core-core repulsion = 20407.092349 eV Total energy + Delta-G solvation = -3211.568582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47880 -38.67547 -37.93942 -36.33251 -34.81815 -34.14704 -31.85818 -29.56505 -27.90953 -27.09049 -25.85906 -24.98723 -23.24861 -22.83874 -20.69036 -19.67586 -18.57025 -18.27845 -17.41907 -17.18021 -16.82699 -16.58423 -16.21617 -15.81710 -15.51113 -15.23310 -14.91802 -14.73383 -14.50438 -14.44007 -13.93627 -13.74729 -13.29950 -13.01689 -12.94139 -12.83418 -12.44444 -12.09056 -11.98386 -11.88066 -11.81749 -11.46426 -11.26879 -10.92060 -10.71069 -10.67124 -10.18620 -9.97412 -9.12732 -8.85966 -8.22397 -6.09832 1.31430 1.37934 1.49495 2.38897 2.88184 3.05729 3.12894 3.35307 3.46921 3.62986 3.89929 4.06450 4.09681 4.23444 4.35419 4.38741 4.45455 4.54706 4.59989 4.63191 4.64155 4.74328 4.76288 4.93273 4.95910 5.00368 5.08334 5.20788 5.32292 5.47085 5.49609 5.61232 5.75101 5.94482 6.20759 6.24222 6.38689 6.52585 6.62303 6.69869 6.79611 6.86918 7.38513 8.90115 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.009164 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.433053 B = 3054.820743 C = 3662.291234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.025 3.975 3 Si 0.917 3.083 4 H -0.281 1.281 5 H -0.307 1.307 6 H -0.236 1.236 7 C -0.439 4.439 8 H 0.040 0.960 9 C -0.019 4.019 10 C 0.061 3.939 11 N -0.492 5.492 12 C -0.031 4.031 13 C 0.073 3.927 14 O -0.401 6.401 15 C 0.078 3.922 16 C 0.072 3.928 17 C 0.090 3.910 18 N -0.837 5.837 19 C 0.062 3.938 20 O -0.569 6.569 21 C -0.205 4.205 22 C -0.159 4.159 23 H 0.262 0.738 24 H 0.163 0.837 25 H -0.010 1.010 26 H -0.002 1.002 27 H 0.156 0.844 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.344 0.656 35 H 0.353 0.647 36 H 0.049 0.951 37 H 0.027 0.973 38 H 0.392 0.608 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.946 -3.732 9.107 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.745 3.255 4 H -0.207 1.207 5 H -0.235 1.235 6 H -0.159 1.159 7 C -0.478 4.478 8 H 0.058 0.942 9 C -0.020 4.020 10 C -0.067 4.067 11 N -0.216 5.216 12 C -0.157 4.157 13 C -0.004 4.004 14 O -0.319 6.319 15 C 0.000 4.000 16 C -0.019 4.019 17 C -0.041 4.041 18 N -0.369 5.369 19 C -0.018 4.018 20 O -0.376 6.376 21 C -0.242 4.242 22 C -0.196 4.196 23 H 0.071 0.929 24 H 0.179 0.821 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.172 0.828 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.241 0.759 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.067 -4.486 8.186 15.256 hybrid contribution 0.229 2.263 0.954 2.467 sum 12.296 -2.223 9.140 15.481 Atomic orbital electron populations 1.70030 1.07409 1.27414 1.53187 1.25489 0.95089 1.01244 0.95335 0.86235 0.80805 0.80489 0.77989 1.20680 1.23528 1.15906 1.20164 0.89636 0.92284 1.45667 0.94185 1.19560 0.91986 1.00722 0.89739 1.22964 0.99803 0.93669 0.90237 1.62292 1.04127 1.42414 1.12787 1.24047 0.93482 0.93404 1.04801 1.22563 0.94847 0.97591 0.85353 1.87876 1.37504 1.75344 1.31224 1.22661 0.83840 0.93305 1.00153 1.21889 0.95350 0.94913 0.89756 1.21491 0.89749 0.94154 0.98668 1.58779 1.14459 1.14929 1.48707 1.22626 0.94139 0.97686 0.87395 1.86363 1.75825 1.40190 1.35204 1.22917 1.02272 0.94619 1.04407 1.22852 1.01788 0.93014 1.01958 0.92863 0.82120 0.99169 0.98374 0.82783 0.89391 0.93415 0.87194 0.92577 0.92886 0.90519 0.84137 0.83185 0.93269 0.95428 0.75869 0.88863 0.91731 0.91152 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.65 13.89 21.44 0.30 -55.36 16 2 C 0.03 1.40 4.00 84.65 0.34 1.74 16 3 Si 0.92 44.24 25.05 68.60 1.72 45.96 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.24 -10.60 5.54 99.48 0.55 -10.05 16 7 C -0.44 -23.47 6.16 25.60 0.16 -23.31 16 8 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 9 C -0.02 -0.84 1.32 -52.93 -0.07 -0.91 16 10 C 0.06 2.39 3.99 86.31 0.34 2.73 16 11 N -0.49 -19.30 4.27 -845.76 -3.61 -22.91 16 12 C -0.03 -1.37 4.76 86.31 0.41 -0.96 16 13 C 0.07 2.98 7.01 72.01 0.50 3.48 16 14 O -0.40 -14.88 10.20 -148.98 -1.52 -16.40 16 15 C 0.08 2.45 5.60 72.01 0.40 2.85 16 16 C 0.07 2.26 0.49 3.54 0.00 2.26 16 17 C 0.09 2.27 5.36 86.30 0.46 2.73 16 18 N -0.84 -18.32 5.97 -186.73 -1.12 -19.44 16 19 C 0.06 1.81 4.40 71.98 0.32 2.13 16 20 O -0.57 -12.95 12.33 -148.98 -1.84 -14.78 16 21 C -0.20 -8.33 6.99 30.59 0.21 -8.11 16 22 C -0.16 -6.17 9.88 30.59 0.30 -5.87 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.16 5.48 3.93 -18.16 -0.07 5.41 16 25 H -0.01 -0.42 6.43 -2.39 -0.02 -0.43 16 26 H 0.00 -0.09 6.50 -2.39 -0.02 -0.10 16 27 H 0.16 8.05 2.66 -2.57 -0.01 8.04 16 28 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.11 3.02 7.75 -2.39 -0.02 3.00 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.18 7.90 -2.39 -0.02 1.16 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.34 7.29 6.75 -89.69 -0.61 6.68 16 35 H 0.35 5.81 9.08 -89.70 -0.81 4.99 16 36 H 0.05 1.47 5.29 -2.39 -0.01 1.45 16 37 H 0.03 0.95 6.21 -2.39 -0.01 0.94 16 38 H 0.39 5.69 9.12 -74.05 -0.68 5.02 16 39 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.06 2.83 6.40 -2.39 -0.02 2.81 16 41 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.10 3.37 8.04 -2.39 -0.02 3.35 16 Total: -1.00 -63.16 302.73 -3.93 -67.09 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -1.25 Total: 37.09 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 3.39 Total: -21.24 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -4.43 Total: -97.70 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -3.36 Total: -31.19 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.72 Total: 45.96 kcal Total: -63.16 -3.93 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693932868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.026 kcal (2) G-P(sol) polarization free energy of solvation -63.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds