Wall clock time and date at job start Mon Mar 30 2020 04:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47473 * 2 1 4 4 C 1.53001 * 109.47232 * 239.99583 * 2 1 3 5 5 C 1.50706 * 109.47071 * 178.84976 * 4 2 1 6 6 H 1.07997 * 119.99912 * 4.94345 * 5 4 2 7 7 C 1.37878 * 120.00030 * 184.94241 * 5 4 2 8 8 N 1.31519 * 119.99872 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47296 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47157 * 120.00202 * 9 7 5 12 12 H 1.48503 * 109.46852 * 239.99853 * 9 7 5 13 13 N 1.46909 * 109.46975 * 119.99877 * 2 1 3 14 14 C 1.47188 * 111.00094 * 272.80217 * 13 2 1 15 15 C 1.52981 * 108.72969 * 54.36357 * 14 13 2 16 16 N 1.45994 * 110.10880 * 50.07623 * 15 14 13 17 17 C 1.33719 * 122.93225 * 342.33599 * 16 15 14 18 18 O 1.21281 * 118.62039 * 181.40825 * 17 16 15 19 19 C 1.46907 * 110.99775 * 35.68974 * 13 2 1 20 20 H 1.08998 * 109.30146 * 166.83050 * 19 13 2 21 21 C 1.52998 * 109.38686 * 47.08810 * 19 13 2 22 22 C 1.50698 * 109.47198 * 68.40596 * 21 19 13 23 23 O 1.20826 * 119.99706 * 0.02562 * 22 21 19 24 24 O 1.34232 * 119.99967 * 179.97438 * 22 21 19 25 25 H 1.08996 * 109.47626 * 192.09162 * 1 2 3 26 26 H 1.09003 * 109.47413 * 312.09627 * 1 2 3 27 27 H 1.09002 * 109.47049 * 72.09209 * 1 2 3 28 28 H 1.08999 * 109.47027 * 298.84928 * 4 2 1 29 29 H 1.09004 * 109.46847 * 58.85489 * 4 2 1 30 30 H 0.96994 * 120.00196 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.59766 * 174.14096 * 14 13 2 32 32 H 1.09004 * 109.58979 * 294.59437 * 14 13 2 33 33 H 1.09005 * 109.37122 * 170.46998 * 15 14 13 34 34 H 1.08996 * 109.37721 * 290.23264 * 15 14 13 35 35 H 0.96997 * 118.52963 * 162.07092 * 16 15 14 36 36 H 1.09000 * 109.47248 * 188.41006 * 21 19 13 37 37 H 1.09000 * 109.47099 * 308.40543 * 21 19 13 38 38 H 0.96701 * 116.99840 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5468 -0.6967 -1.2635 6 1 4.0881 -0.2860 -0.4241 7 6 4.2342 -1.1984 -2.3483 8 7 3.5749 -1.6981 -3.3707 9 14 6.1018 -1.1685 -2.3657 10 1 6.5989 -0.5599 -1.1057 11 1 6.6181 -2.5560 -2.4819 12 1 6.5732 -0.3664 -3.5231 13 7 2.0196 -0.6925 1.1995 14 6 2.1321 0.2362 2.3358 15 6 0.7842 0.9311 2.5377 16 7 -0.2887 -0.0580 2.5818 17 6 -0.1447 -1.3075 2.1278 18 8 -1.0964 -2.0576 2.1792 19 6 1.1448 -1.8192 1.5508 20 1 1.6458 -2.4485 2.2865 21 6 0.8484 -2.6426 0.2958 22 6 2.1068 -3.3358 -0.1591 23 8 3.1351 -3.1869 0.4576 24 8 2.0850 -4.1194 -1.2487 25 1 -0.3634 -1.0048 0.2153 26 1 -0.3634 0.6889 0.7626 27 1 -0.3633 0.3160 -0.9779 28 1 1.6936 -1.7548 -1.2388 29 1 1.6599 -0.2195 -2.1391 30 1 4.0585 -2.0507 -4.1340 31 1 2.3960 -0.3182 3.2364 32 1 2.8993 0.9812 2.1244 33 1 0.8024 1.4907 3.4729 34 1 0.6030 1.6164 1.7097 35 1 -1.1430 0.2017 2.9607 36 1 0.0848 -3.3870 0.5216 37 1 0.4905 -1.9834 -0.4950 38 1 2.9167 -4.5432 -1.5013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695692017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:47 Heat of formation + Delta-G solvation = -52.783334 kcal Electronic energy + Delta-G solvation = -23361.378137 eV Core-core repulsion = 20013.815116 eV Total energy + Delta-G solvation = -3347.563021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73722 -39.05222 -37.42178 -35.34407 -34.78989 -32.85048 -31.40368 -31.04822 -28.07171 -27.46388 -24.81816 -23.08400 -22.63987 -20.59654 -20.21637 -18.77789 -17.27846 -17.10989 -16.77912 -16.36787 -15.87803 -15.39780 -14.91485 -14.47810 -14.37077 -13.78896 -13.52797 -13.08599 -12.72879 -12.62760 -12.19889 -12.02539 -11.86061 -11.83009 -11.46005 -11.16558 -10.97323 -10.80171 -10.60842 -10.36414 -10.28061 -10.14397 -9.59753 -9.41091 -9.29718 -8.98603 -8.86148 -8.18066 -7.65208 -5.85797 -3.81738 2.68346 3.19294 3.38144 3.39535 3.47501 3.54114 3.97902 4.22389 4.59689 4.68301 4.98433 5.01600 5.10324 5.32143 5.48420 5.50021 5.59387 5.65668 5.80501 5.87670 5.92036 6.01935 6.23879 6.25804 6.34382 6.49197 6.75454 6.83509 7.22330 7.32924 7.42476 7.58986 7.71325 7.81331 8.12816 8.25418 8.56380 8.98161 9.21527 9.78748 11.24717 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.008216 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.322150 B = 3407.241104 C = 3877.253936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.077 3.923 3 H 0.075 0.925 4 C 0.007 3.993 5 C -0.474 4.474 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.482 5.482 14 C 0.037 3.963 15 C 0.068 3.932 16 N -0.724 5.724 17 C 0.506 3.494 18 O -0.560 6.560 19 C 0.088 3.912 20 H 0.117 0.883 21 C -0.126 4.126 22 C 0.498 3.502 23 O -0.487 6.487 24 O -0.517 6.517 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.255 0.745 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.395 0.605 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 3.154 10.021 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.031 4.031 3 H 0.094 0.906 4 C -0.029 4.029 5 C -0.513 4.513 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.218 1.218 13 N -0.204 5.204 14 C -0.092 4.092 15 C -0.058 4.058 16 N -0.377 5.377 17 C 0.293 3.707 18 O -0.438 6.438 19 C -0.024 4.024 20 H 0.135 0.865 21 C -0.164 4.164 22 C 0.338 3.662 23 O -0.373 6.373 24 O -0.329 6.329 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.120 0.880 37 H 0.159 0.841 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.998 2.671 9.972 11.940 hybrid contribution 0.535 0.387 0.024 0.660 sum -5.463 3.058 9.996 11.795 Atomic orbital electron populations 1.23794 0.99456 1.02553 1.03101 1.22103 0.90269 0.98593 0.92107 0.90649 1.19869 0.97360 0.96070 0.89644 1.21033 0.90740 1.37813 1.01717 0.92177 1.24932 0.97593 0.96244 0.95930 1.69988 1.34620 1.42291 1.07168 0.86619 0.87085 0.77349 0.77378 1.19954 1.21517 1.21783 1.62807 1.47073 1.07632 1.02919 1.22630 0.94722 0.96607 0.95289 1.22347 0.89170 0.91902 1.02369 1.45675 1.16378 1.11859 1.63756 1.21045 0.91629 0.81612 0.76408 1.90728 1.40687 1.55097 1.57300 1.21583 0.88432 0.94912 0.97507 0.86506 1.22149 0.95176 1.00334 0.98712 1.22164 0.90240 0.75938 0.77812 1.90677 1.32780 1.58339 1.55491 1.84413 1.42807 1.60096 1.45535 0.90857 0.91356 0.91980 0.94685 0.95913 0.93571 0.90292 0.88313 0.90714 0.90680 0.76959 0.87990 0.84130 0.73815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.74 6.77 37.15 0.25 -3.48 16 2 C 0.08 1.42 1.78 -67.71 -0.12 1.30 16 3 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 4 C 0.01 0.17 3.70 -27.88 -0.10 0.06 16 5 C -0.47 -12.61 7.72 -34.44 -0.27 -12.88 16 6 H 0.06 1.65 7.63 -52.49 -0.40 1.25 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 N -0.48 -8.43 3.77 -220.12 -0.83 -9.26 16 14 C 0.04 0.48 5.88 -3.68 -0.02 0.46 16 15 C 0.07 0.71 6.21 -4.32 -0.03 0.68 16 16 N -0.72 -8.82 4.04 -61.07 -0.25 -9.07 16 17 C 0.51 7.93 4.58 -11.67 -0.05 7.88 16 18 O -0.56 -10.26 16.77 5.56 0.09 -10.16 16 19 C 0.09 1.50 1.94 -69.08 -0.13 1.36 16 20 H 0.12 2.00 7.81 -51.93 -0.41 1.59 16 21 C -0.13 -2.33 3.98 -27.89 -0.11 -2.44 16 22 C 0.50 10.39 5.37 36.00 0.19 10.58 16 23 O -0.49 -11.31 15.51 -18.75 -0.29 -11.60 16 24 O -0.52 -10.37 13.30 -39.26 -0.52 -10.90 16 25 H 0.07 1.26 2.85 -51.93 -0.15 1.11 16 26 H 0.07 0.95 3.93 -51.93 -0.20 0.74 16 27 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 28 H 0.04 0.85 2.62 -51.93 -0.14 0.72 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.80 5.84 -51.93 -0.30 0.50 16 35 H 0.39 4.16 8.84 -40.82 -0.36 3.80 16 36 H 0.10 1.73 7.52 -51.93 -0.39 1.34 16 37 H 0.14 2.74 3.05 -51.93 -0.16 2.58 16 38 H 0.40 7.13 9.10 45.56 0.41 7.54 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -32.67 286.58 -5.98 -38.65 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.73 Total: 11.10 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.49 Total: 4.87 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.34 Total: -43.26 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.72 Total: -32.66 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.67 -5.98 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695692017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.137 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds