Wall clock time and date at job start Mon Mar 30 2020 04:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47473 * 2 1 4 4 C 1.53001 * 109.47232 * 239.99583 * 2 1 3 5 5 C 1.50706 * 109.47071 * 178.84976 * 4 2 1 6 6 H 1.07997 * 119.99912 * 4.94345 * 5 4 2 7 7 C 1.37878 * 120.00030 * 184.94241 * 5 4 2 8 8 N 1.31519 * 119.99872 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47296 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47157 * 120.00202 * 9 7 5 12 12 H 1.48503 * 109.46852 * 239.99853 * 9 7 5 13 13 N 1.46909 * 109.46975 * 119.99877 * 2 1 3 14 14 C 1.47188 * 111.00094 * 272.80217 * 13 2 1 15 15 C 1.52981 * 108.72969 * 54.36357 * 14 13 2 16 16 N 1.45994 * 110.10880 * 50.07623 * 15 14 13 17 17 C 1.33719 * 122.93225 * 342.33599 * 16 15 14 18 18 O 1.21281 * 118.62039 * 181.40825 * 17 16 15 19 19 C 1.46907 * 110.99775 * 35.68974 * 13 2 1 20 20 H 1.08998 * 109.30146 * 166.83050 * 19 13 2 21 21 C 1.52998 * 109.38686 * 47.08810 * 19 13 2 22 22 C 1.50698 * 109.47198 * 68.40596 * 21 19 13 23 23 O 1.20826 * 119.99706 * 0.02562 * 22 21 19 24 24 O 1.34232 * 119.99967 * 179.97438 * 22 21 19 25 25 H 1.08996 * 109.47626 * 192.09162 * 1 2 3 26 26 H 1.09003 * 109.47413 * 312.09627 * 1 2 3 27 27 H 1.09002 * 109.47049 * 72.09209 * 1 2 3 28 28 H 1.08999 * 109.47027 * 298.84928 * 4 2 1 29 29 H 1.09004 * 109.46847 * 58.85489 * 4 2 1 30 30 H 0.96994 * 120.00196 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.59766 * 174.14096 * 14 13 2 32 32 H 1.09004 * 109.58979 * 294.59437 * 14 13 2 33 33 H 1.09005 * 109.37122 * 170.46998 * 15 14 13 34 34 H 1.08996 * 109.37721 * 290.23264 * 15 14 13 35 35 H 0.96997 * 118.52963 * 162.07092 * 16 15 14 36 36 H 1.09000 * 109.47248 * 188.41006 * 21 19 13 37 37 H 1.09000 * 109.47099 * 308.40543 * 21 19 13 38 38 H 0.96701 * 116.99840 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5468 -0.6967 -1.2635 6 1 4.0881 -0.2860 -0.4241 7 6 4.2342 -1.1984 -2.3483 8 7 3.5749 -1.6981 -3.3707 9 14 6.1018 -1.1685 -2.3657 10 1 6.5989 -0.5599 -1.1057 11 1 6.6181 -2.5560 -2.4819 12 1 6.5732 -0.3664 -3.5231 13 7 2.0196 -0.6925 1.1995 14 6 2.1321 0.2362 2.3358 15 6 0.7842 0.9311 2.5377 16 7 -0.2887 -0.0580 2.5818 17 6 -0.1447 -1.3075 2.1278 18 8 -1.0964 -2.0576 2.1792 19 6 1.1448 -1.8192 1.5508 20 1 1.6458 -2.4485 2.2865 21 6 0.8484 -2.6426 0.2958 22 6 2.1068 -3.3358 -0.1591 23 8 3.1351 -3.1869 0.4576 24 8 2.0850 -4.1194 -1.2487 25 1 -0.3634 -1.0048 0.2153 26 1 -0.3634 0.6889 0.7626 27 1 -0.3633 0.3160 -0.9779 28 1 1.6936 -1.7548 -1.2388 29 1 1.6599 -0.2195 -2.1391 30 1 4.0585 -2.0507 -4.1340 31 1 2.3960 -0.3182 3.2364 32 1 2.8993 0.9812 2.1244 33 1 0.8024 1.4907 3.4729 34 1 0.6030 1.6164 1.7097 35 1 -1.1430 0.2017 2.9607 36 1 0.0848 -3.3870 0.5216 37 1 0.4905 -1.9834 -0.4950 38 1 2.9167 -4.5432 -1.5013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695692017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:47 Heat of formation + Delta-G solvation = -78.625255 kcal Electronic energy + Delta-G solvation = -23362.498726 eV Core-core repulsion = 20013.815116 eV Total energy + Delta-G solvation = -3348.683611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.02864 -40.64660 -38.74535 -36.78428 -36.29318 -34.73180 -32.73498 -32.60983 -29.38251 -29.08927 -26.31637 -24.58686 -24.07076 -22.05991 -21.68146 -20.10542 -18.79507 -18.54732 -18.23990 -17.79653 -17.52538 -16.66790 -16.44157 -16.30904 -15.91995 -15.14353 -14.86830 -14.34050 -14.31223 -13.99799 -13.60446 -13.53158 -13.39987 -13.31616 -12.97919 -12.90030 -12.55893 -12.39253 -12.29786 -12.02668 -11.93419 -11.45247 -11.37912 -11.11763 -10.94693 -10.78156 -10.24628 -10.03995 -8.92856 -7.97769 -5.96954 1.40246 1.44267 1.45755 1.54461 1.69439 2.08124 2.53651 2.56696 2.96772 3.37366 3.50687 3.68468 3.92107 4.04096 4.14752 4.32002 4.33660 4.42025 4.47014 4.59327 4.77306 4.81549 4.82411 4.94278 5.06228 5.15317 5.25673 5.53242 5.72424 5.79738 5.97820 6.00353 6.13544 6.23088 6.32543 6.55300 7.11291 7.13257 7.35163 7.65182 9.12293 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.008216 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.322150 B = 3407.241104 C = 3877.253936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.089 3.911 3 H 0.080 0.920 4 C 0.006 3.994 5 C -0.469 4.469 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.926 5.926 9 Si 0.936 3.064 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.288 1.288 13 N -0.508 5.508 14 C 0.031 3.969 15 C 0.072 3.928 16 N -0.709 5.709 17 C 0.512 3.488 18 O -0.589 6.589 19 C 0.091 3.909 20 H 0.114 0.886 21 C -0.123 4.123 22 C 0.495 3.505 23 O -0.515 6.515 24 O -0.521 6.521 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.032 0.968 29 H -0.008 1.008 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.624 4.602 11.783 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.019 4.019 3 H 0.098 0.902 4 C -0.030 4.030 5 C -0.508 4.508 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.231 5.231 14 C -0.097 4.097 15 C -0.052 4.052 16 N -0.362 5.362 17 C 0.298 3.702 18 O -0.470 6.470 19 C -0.021 4.021 20 H 0.132 0.868 21 C -0.160 4.160 22 C 0.337 3.663 23 O -0.403 6.403 24 O -0.334 6.334 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.010 0.990 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.441 4.159 11.753 14.033 hybrid contribution 0.713 -0.060 -0.507 0.877 sum -5.728 4.100 11.246 13.269 Atomic orbital electron populations 1.23700 0.97552 1.02798 1.03824 1.21760 0.91648 0.97857 0.90655 0.90175 1.19822 0.95745 0.96253 0.91229 1.21234 0.92356 1.36400 1.00814 0.93120 1.25528 1.00787 0.96626 0.96091 1.70083 1.35668 1.43515 1.07644 0.85839 0.83423 0.77025 0.77263 1.19855 1.21772 1.21424 1.62621 1.47586 1.08820 1.04110 1.22754 0.96697 0.96309 0.93913 1.22429 0.86827 0.91057 1.04921 1.45569 1.17491 1.10796 1.62302 1.20678 0.90468 0.82553 0.76495 1.90721 1.41266 1.56263 1.58784 1.21466 0.89354 0.94728 0.96557 0.86839 1.22149 0.94148 1.00511 0.99196 1.22700 0.90762 0.75449 0.77351 1.90650 1.33933 1.59376 1.56301 1.84412 1.43479 1.60038 1.45423 0.91672 0.88510 0.92513 0.95088 0.98998 0.93773 0.89299 0.87667 0.86443 0.90060 0.75378 0.86779 0.85122 0.72963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.75 6.77 71.98 0.49 -6.26 16 2 C 0.09 3.18 1.78 44.91 0.08 3.26 16 3 H 0.08 2.77 7.54 -2.39 -0.02 2.76 16 4 C 0.01 0.29 3.70 29.85 0.11 0.40 16 5 C -0.47 -25.07 7.72 25.60 0.20 -24.87 16 6 H 0.05 2.76 7.63 -2.91 -0.02 2.74 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -53.65 13.29 21.45 0.28 -53.36 16 9 Si 0.94 45.39 29.54 68.60 2.03 47.41 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 N -0.51 -17.00 3.77 -850.34 -3.21 -20.20 16 14 C 0.03 0.72 5.88 86.24 0.51 1.23 16 15 C 0.07 1.19 6.21 86.47 0.54 1.73 16 16 N -0.71 -14.61 4.04 -466.12 -1.88 -16.49 16 17 C 0.51 14.88 4.58 87.68 0.40 15.28 16 18 O -0.59 -20.57 16.77 -3.03 -0.05 -20.62 16 19 C 0.09 2.99 1.94 44.03 0.09 3.08 16 20 H 0.11 3.79 7.81 -2.39 -0.02 3.77 16 21 C -0.12 -4.50 3.98 29.85 0.12 -4.38 16 22 C 0.49 20.88 5.37 71.24 0.38 21.26 16 23 O -0.51 -24.11 15.51 21.96 0.34 -23.77 16 24 O -0.52 -21.29 13.30 -51.44 -0.68 -21.98 16 25 H 0.07 2.14 2.85 -2.39 -0.01 2.14 16 26 H 0.10 2.36 3.93 -2.39 -0.01 2.35 16 27 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 28 H 0.03 1.53 2.62 -2.39 -0.01 1.53 16 29 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 30 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.34 5.84 -2.39 -0.01 1.32 16 35 H 0.41 6.88 8.84 -92.71 -0.82 6.06 16 36 H 0.11 3.85 7.52 -2.39 -0.02 3.83 16 37 H 0.13 5.11 3.05 -2.39 -0.01 5.10 16 38 H 0.41 14.89 9.10 -74.06 -0.67 14.22 16 Total: -1.00 -70.38 286.58 -0.16 -70.54 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.36 Total: 26.96 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 3.37 Total: 11.52 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -4.80 Total: -90.06 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -0.39 Total: -66.37 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.38 -0.16 -70.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695692017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.089 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds