Wall clock time and date at job start Mon Mar 30 2020 04:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47407 * 2 1 4 4 C 1.50704 * 109.47219 * 240.00141 * 2 1 3 5 5 H 1.08002 * 120.00216 * 239.99797 * 4 2 1 6 6 C 1.37879 * 119.99996 * 59.99714 * 4 2 1 7 7 N 1.31517 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00038 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47066 * 60.00576 * 8 6 4 10 10 H 1.48500 * 109.46986 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47520 * 300.00049 * 8 6 4 12 12 N 1.46501 * 109.47398 * 120.00260 * 2 1 3 13 13 C 1.34781 * 119.99667 * 274.99803 * 12 2 1 14 14 O 1.21275 * 119.99844 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99658 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.72792 * 56.90714 * 15 13 12 17 17 C 1.54941 * 110.67115 * 293.80998 * 15 13 12 18 18 C 1.54591 * 102.92320 * 204.15137 * 17 15 13 19 19 C 1.53997 * 105.13862 * 21.95584 * 18 17 15 20 20 H 1.08997 * 109.91708 * 241.87022 * 19 18 17 21 21 C 1.50708 * 110.07845 * 120.66969 * 19 18 17 22 22 O 1.20831 * 119.99443 * 242.30620 * 21 19 18 23 23 O 1.34221 * 120.00078 * 62.31376 * 21 19 18 24 24 N 1.47898 * 107.05794 * 1.22553 * 19 18 17 25 25 C 1.46906 * 110.99718 * 214.15522 * 24 19 18 26 26 H 1.08999 * 109.47199 * 59.99891 * 1 2 3 27 27 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47023 * 299.99885 * 1 2 3 29 29 H 0.96999 * 120.00328 * 180.02562 * 7 6 4 30 30 H 0.96994 * 119.99780 * 95.00047 * 12 2 1 31 31 H 1.08997 * 110.72523 * 85.79022 * 17 15 13 32 32 H 1.09001 * 110.71619 * 322.51132 * 17 15 13 33 33 H 1.08995 * 110.31136 * 263.03892 * 18 17 15 34 34 H 1.09001 * 110.31033 * 140.86708 * 18 17 15 35 35 H 0.96698 * 117.00201 * 179.97438 * 23 21 19 36 36 H 1.08992 * 109.47459 * 59.87218 * 25 24 19 37 37 H 1.09004 * 109.47040 * 179.87369 * 25 24 19 38 38 H 1.09000 * 109.47033 * 299.87321 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1583 2.4116 15 6 2.6490 -0.7288 3.5876 16 1 3.6253 -1.1769 3.4031 17 6 1.6332 -1.8030 4.0514 18 6 1.9560 -1.9575 5.5554 19 6 2.6658 -0.6494 5.9509 20 1 3.6789 -0.8647 6.2904 21 6 1.8958 0.0473 7.0430 22 8 1.4264 1.1433 6.8465 23 8 1.7315 -0.5495 8.2340 24 7 2.7096 0.2028 4.7429 25 6 3.9401 1.0045 4.7086 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7087 1.1614 -3.4844 30 1 2.2490 -1.6317 1.1525 31 1 1.7969 -2.7423 3.5233 32 1 0.6106 -1.4531 3.9103 33 1 2.6166 -2.8096 5.7149 34 1 1.0370 -2.0777 6.1291 35 1 1.2306 -0.0634 8.9033 36 1 4.8055 0.3419 4.7027 37 1 3.9477 1.6201 3.8091 38 1 3.9801 1.6464 5.5886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703444536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:34 Heat of formation + Delta-G solvation = -116.779493 kcal Electronic energy + Delta-G solvation = -21334.558729 eV Core-core repulsion = 17984.220626 eV Total energy + Delta-G solvation = -3350.338102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70712 -39.32900 -37.55973 -36.05973 -34.68733 -32.59605 -32.08799 -30.44749 -28.50917 -25.93286 -25.22546 -23.89080 -22.22222 -20.99350 -20.24901 -19.27475 -18.08049 -17.47608 -16.70889 -16.21422 -15.78020 -15.24670 -15.02833 -14.40857 -14.35571 -14.04706 -13.66377 -13.55846 -12.92668 -12.58575 -12.31115 -12.25962 -11.99440 -11.81252 -11.55276 -11.44752 -11.22657 -11.06122 -11.04696 -10.91081 -10.65882 -10.40089 -10.29926 -10.20955 -9.03616 -8.99780 -8.53305 -8.41162 -7.84826 -6.10187 -4.19822 2.18973 2.68677 3.25969 3.31446 3.32269 3.41807 3.69926 4.27264 4.34724 4.45337 4.57108 4.64217 5.01605 5.13450 5.21786 5.24276 5.32863 5.39540 5.52644 5.59175 5.72015 5.78278 6.04175 6.07647 6.41025 6.65435 6.85602 6.87599 7.02159 7.19582 7.51045 7.60489 7.72681 7.89198 7.95467 8.18280 8.71125 8.81944 9.20222 9.48103 10.95644 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040079 B = 0.004028 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.455763 B = 6949.663310 C = 7054.898147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.710 5.710 13 C 0.511 3.489 14 O -0.529 6.529 15 C 0.046 3.954 16 H 0.079 0.921 17 C -0.114 4.114 18 C -0.115 4.115 19 C 0.074 3.926 20 H 0.091 0.909 21 C 0.479 3.521 22 O -0.483 6.483 23 O -0.524 6.524 24 N -0.477 5.477 25 C 0.021 3.979 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 -8.037 17.485 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.359 5.359 13 C 0.294 3.706 14 O -0.406 6.406 15 C -0.065 4.065 16 H 0.097 0.903 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.036 4.036 20 H 0.109 0.891 21 C 0.318 3.682 22 O -0.367 6.367 23 O -0.336 6.336 24 N -0.202 5.202 25 C -0.128 4.128 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.267 0.733 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.788 -6.536 16.978 18.582 hybrid contribution 0.812 -1.034 -0.366 1.365 sum 4.599 -7.570 16.612 18.826 Atomic orbital electron populations 1.22069 0.98504 0.99027 1.00914 1.18710 0.91007 0.93924 0.79866 0.93456 1.21181 1.32499 1.13212 0.90361 0.92177 1.24890 0.94834 0.94953 0.99024 1.69899 1.35782 1.22385 1.23960 0.86515 0.79124 0.79576 0.81896 1.20179 1.21150 1.20225 1.46478 1.65719 1.13422 1.10312 1.19879 0.79379 0.87554 0.83799 1.90683 1.49670 1.15743 1.84458 1.22843 0.99571 0.92576 0.91501 0.90329 1.22509 1.00226 0.98060 0.94440 1.22355 1.01338 0.94693 0.96944 1.21889 0.98906 0.92841 0.89949 0.89120 1.23247 0.78554 0.84433 0.81936 1.90765 1.44951 1.20513 1.80470 1.84498 1.71660 1.53012 1.24423 1.63823 1.38124 1.19755 0.98492 1.22581 0.88167 0.97640 1.04363 0.89247 0.95538 0.96587 0.92527 0.78157 0.89358 0.89688 0.89543 0.89978 0.73313 0.95376 0.89511 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.15 0.34 -3.35 16 2 C 0.27 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.37 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.71 -14.58 5.07 -54.93 -0.28 -14.85 16 13 C 0.51 10.26 6.98 -10.98 -0.08 10.19 16 14 O -0.53 -13.18 15.48 5.56 0.09 -13.10 16 15 C 0.05 0.68 2.71 -66.94 -0.18 0.49 16 16 H 0.08 0.96 7.97 -51.93 -0.41 0.54 16 17 C -0.11 -1.33 6.49 -24.87 -0.16 -1.49 16 18 C -0.12 -1.08 6.55 -25.38 -0.17 -1.25 16 19 C 0.07 0.85 2.98 -67.79 -0.20 0.65 16 20 H 0.09 0.81 7.73 -51.93 -0.40 0.41 16 21 C 0.48 5.98 7.45 36.01 0.27 6.24 16 22 O -0.48 -8.16 17.22 -18.75 -0.32 -8.49 16 23 O -0.52 -4.55 13.40 -39.23 -0.53 -5.08 16 24 N -0.48 -7.22 3.97 -225.69 -0.90 -8.12 16 25 C 0.02 0.28 9.20 60.07 0.55 0.84 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 35 H 0.41 1.93 9.10 45.56 0.41 2.35 16 36 H 0.03 0.31 8.00 -51.93 -0.42 -0.11 16 37 H 0.09 1.41 7.47 -51.93 -0.39 1.02 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -34.79 320.47 -6.43 -41.22 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.73 Total: 6.16 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.19 Total: 6.27 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.55 Total: -47.34 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.76 Total: -26.66 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.79 -6.43 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703444536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.557 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds