Wall clock time and date at job start Mon Mar 30 2020 04:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47407 * 2 1 4 4 C 1.50704 * 109.47219 * 240.00141 * 2 1 3 5 5 H 1.08002 * 120.00216 * 239.99797 * 4 2 1 6 6 C 1.37879 * 119.99996 * 59.99714 * 4 2 1 7 7 N 1.31517 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00038 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47066 * 60.00576 * 8 6 4 10 10 H 1.48500 * 109.46986 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47520 * 300.00049 * 8 6 4 12 12 N 1.46501 * 109.47398 * 120.00260 * 2 1 3 13 13 C 1.34781 * 119.99667 * 274.99803 * 12 2 1 14 14 O 1.21275 * 119.99844 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99658 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.72792 * 56.90714 * 15 13 12 17 17 C 1.54941 * 110.67115 * 293.80998 * 15 13 12 18 18 C 1.54591 * 102.92320 * 204.15137 * 17 15 13 19 19 C 1.53997 * 105.13862 * 21.95584 * 18 17 15 20 20 H 1.08997 * 109.91708 * 241.87022 * 19 18 17 21 21 C 1.50708 * 110.07845 * 120.66969 * 19 18 17 22 22 O 1.20831 * 119.99443 * 242.30620 * 21 19 18 23 23 O 1.34221 * 120.00078 * 62.31376 * 21 19 18 24 24 N 1.47898 * 107.05794 * 1.22553 * 19 18 17 25 25 C 1.46906 * 110.99718 * 214.15522 * 24 19 18 26 26 H 1.08999 * 109.47199 * 59.99891 * 1 2 3 27 27 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47023 * 299.99885 * 1 2 3 29 29 H 0.96999 * 120.00328 * 180.02562 * 7 6 4 30 30 H 0.96994 * 119.99780 * 95.00047 * 12 2 1 31 31 H 1.08997 * 110.72523 * 85.79022 * 17 15 13 32 32 H 1.09001 * 110.71619 * 322.51132 * 17 15 13 33 33 H 1.08995 * 110.31136 * 263.03892 * 18 17 15 34 34 H 1.09001 * 110.31033 * 140.86708 * 18 17 15 35 35 H 0.96698 * 117.00201 * 179.97438 * 23 21 19 36 36 H 1.08992 * 109.47459 * 59.87218 * 25 24 19 37 37 H 1.09004 * 109.47040 * 179.87369 * 25 24 19 38 38 H 1.09000 * 109.47033 * 299.87321 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1583 2.4116 15 6 2.6490 -0.7288 3.5876 16 1 3.6253 -1.1769 3.4031 17 6 1.6332 -1.8030 4.0514 18 6 1.9560 -1.9575 5.5554 19 6 2.6658 -0.6494 5.9509 20 1 3.6789 -0.8647 6.2904 21 6 1.8958 0.0473 7.0430 22 8 1.4264 1.1433 6.8465 23 8 1.7315 -0.5495 8.2340 24 7 2.7096 0.2028 4.7429 25 6 3.9401 1.0045 4.7086 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7087 1.1614 -3.4844 30 1 2.2490 -1.6317 1.1525 31 1 1.7969 -2.7423 3.5233 32 1 0.6106 -1.4531 3.9103 33 1 2.6166 -2.8096 5.7149 34 1 1.0370 -2.0777 6.1291 35 1 1.2306 -0.0634 8.9033 36 1 4.8055 0.3419 4.7027 37 1 3.9477 1.6201 3.8091 38 1 3.9801 1.6464 5.5886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703444536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:33 Heat of formation + Delta-G solvation = -145.097653 kcal Electronic energy + Delta-G solvation = -21335.786696 eV Core-core repulsion = 17984.220626 eV Total energy + Delta-G solvation = -3351.566070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71536 -40.64265 -38.86272 -36.97903 -36.60383 -34.34911 -33.21920 -31.79830 -30.15569 -27.33086 -26.95062 -25.07411 -23.38527 -22.44047 -21.35098 -20.90070 -19.19389 -18.72050 -18.01837 -17.39691 -17.19578 -16.95267 -16.15910 -15.97635 -15.56791 -15.50562 -14.85838 -14.66076 -14.44476 -14.15238 -13.80239 -13.49792 -13.19733 -13.00476 -12.94233 -12.81751 -12.69751 -12.62549 -12.41566 -12.24404 -12.19884 -12.12008 -11.92072 -11.34828 -11.09961 -10.65500 -10.51283 -9.71340 -9.46582 -8.15113 -6.33329 1.26814 1.46613 1.49130 1.56876 1.82421 1.87944 2.36445 2.56164 3.13831 3.16814 3.46066 3.57623 3.90677 4.07587 4.12245 4.30793 4.37372 4.39067 4.55679 4.69049 4.76764 4.91281 4.93758 4.96601 5.03641 5.11658 5.15215 5.44471 5.62827 5.65811 5.67866 5.73011 5.87486 5.96530 6.11754 6.75165 7.04940 7.08921 7.35220 7.65213 8.91123 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040079 B = 0.004028 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.455763 B = 6949.663310 C = 7054.898147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.008 1.008 4 C -0.545 4.545 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.261 1.261 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.703 5.703 13 C 0.504 3.496 14 O -0.588 6.588 15 C 0.057 3.943 16 H 0.115 0.885 17 C -0.112 4.112 18 C -0.103 4.103 19 C 0.072 3.928 20 H 0.127 0.873 21 C 0.484 3.516 22 O -0.541 6.541 23 O -0.507 6.507 24 N -0.519 5.519 25 C 0.025 3.975 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.005 0.995 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.426 0.574 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -11.758 18.606 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.010 0.990 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.186 1.186 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.353 5.353 13 C 0.290 3.710 14 O -0.468 6.468 15 C -0.054 4.054 16 H 0.132 0.868 17 C -0.150 4.150 18 C -0.141 4.141 19 C -0.038 4.038 20 H 0.144 0.856 21 C 0.326 3.674 22 O -0.429 6.429 23 O -0.320 6.320 24 N -0.244 5.244 25 C -0.122 4.122 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.288 0.712 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.388 -10.329 18.158 21.573 hybrid contribution 0.291 0.178 -0.612 0.701 sum 5.679 -10.151 17.546 21.051 Atomic orbital electron populations 1.21882 0.98596 0.99438 0.99147 1.18283 0.90912 0.91766 0.82166 0.98973 1.21526 1.32562 1.13600 0.90593 0.90433 1.25853 0.94874 0.95563 1.02494 1.70071 1.37117 1.24073 1.24613 0.85361 0.78648 0.78734 0.77361 1.18598 1.21498 1.19470 1.46177 1.65586 1.14183 1.09317 1.20998 0.77851 0.87033 0.85094 1.90657 1.52015 1.18642 1.85482 1.22770 1.01724 0.92404 0.88546 0.86754 1.22568 0.97567 0.98110 0.96753 1.22414 1.02267 0.94797 0.94626 1.22088 1.00870 0.92701 0.88109 0.85556 1.23607 0.77405 0.83560 0.82838 1.90759 1.47517 1.23067 1.81604 1.84450 1.71437 1.52480 1.23676 1.63603 1.39227 1.21456 1.00163 1.22473 0.89368 0.97960 1.02442 0.91719 0.93792 0.97593 0.92643 0.75860 0.86003 0.92746 0.85251 0.89718 0.71228 0.91830 0.93340 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 2 C 0.27 14.35 2.56 44.24 0.11 14.46 16 3 H -0.01 -0.48 7.58 -2.39 -0.02 -0.50 16 4 C -0.54 -28.65 8.73 25.60 0.22 -28.43 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 8 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 9 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 N -0.70 -28.83 5.07 -446.10 -2.26 -31.09 16 13 C 0.50 20.57 6.98 87.66 0.61 21.19 16 14 O -0.59 -31.05 15.48 -3.01 -0.05 -31.10 16 15 C 0.06 1.53 2.71 44.52 0.12 1.65 16 16 H 0.12 2.31 7.97 -2.39 -0.02 2.29 16 17 C -0.11 -2.26 6.49 31.80 0.21 -2.05 16 18 C -0.10 -1.47 6.55 31.47 0.21 -1.26 16 19 C 0.07 1.40 2.98 44.32 0.13 1.54 16 20 H 0.13 1.61 7.73 -2.39 -0.02 1.59 16 21 C 0.48 11.22 7.45 71.24 0.53 11.75 16 22 O -0.54 -18.47 17.22 21.95 0.38 -18.09 16 23 O -0.51 -7.33 13.40 -51.33 -0.69 -8.02 16 24 N -0.52 -15.13 3.97 -867.95 -3.45 -18.58 16 25 C 0.03 0.69 9.20 127.69 1.17 1.86 16 26 H 0.06 3.70 6.07 -2.39 -0.01 3.68 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.41 13.33 8.54 -92.71 -0.79 12.54 16 31 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.44 8.05 -2.39 -0.02 1.42 16 33 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.20 7.69 -2.39 -0.02 1.19 16 35 H 0.43 3.02 9.10 -74.06 -0.67 2.35 16 36 H 0.06 1.22 8.00 -2.39 -0.02 1.20 16 37 H 0.05 1.65 7.47 -2.38 -0.02 1.64 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -81.72 320.47 0.26 -81.46 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.38 Total: 19.47 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 4.43 Total: 15.59 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -5.47 Total: -103.01 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.36 Total: -57.21 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -81.72 0.26 -81.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703444536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.640 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds