Wall clock time and date at job start Mon Mar 30 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47118 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46842 * 30.00132 * 3 2 1 6 6 H 1.48501 * 109.46961 * 150.00117 * 3 2 1 7 7 C 1.38953 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99692 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99676 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00322 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99894 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47289 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00492 * 187.83804 * 13 12 10 15 15 C 1.53007 * 108.85093 * 302.44502 * 14 13 12 16 16 O 1.42902 * 109.47146 * 65.67850 * 15 14 13 17 17 C 1.54067 * 108.87836 * 61.00193 * 14 13 12 18 18 C 1.54000 * 112.85272 * 78.86834 * 17 14 13 19 19 C 1.50475 * 112.54799 * 318.44021 * 18 17 14 20 20 C 1.54249 * 108.52816 * 94.06921 * 19 18 17 21 21 C 1.45542 * 112.40138 * 280.02650 * 20 19 18 22 22 C 1.50472 * 108.88091 * 183.88957 * 14 13 12 23 23 H 0.97004 * 120.00090 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00265 * 0.02562 * 9 7 2 25 25 H 1.08993 * 109.47299 * 60.00275 * 12 10 9 26 26 H 1.09000 * 109.47479 * 299.99918 * 12 10 9 27 27 H 1.00898 * 111.00037 * 63.87869 * 13 12 10 28 28 H 1.08997 * 109.47283 * 305.67736 * 15 14 13 29 29 H 1.09002 * 109.47307 * 185.67858 * 15 14 13 30 30 H 0.96698 * 114.00198 * 180.02562 * 16 15 14 31 31 H 1.09007 * 108.81237 * 199.82624 * 17 14 13 32 32 H 1.09001 * 108.81203 * 318.10397 * 17 14 13 33 33 H 1.08999 * 108.91333 * 197.60699 * 18 17 14 34 34 H 1.08999 * 108.71504 * 79.13596 * 18 17 14 35 35 H 1.09000 * 109.63054 * 334.36335 * 19 18 17 36 36 H 1.08995 * 109.63124 * 213.77956 * 19 18 17 37 37 H 1.08993 * 108.89510 * 159.26779 * 20 19 18 38 38 H 1.09003 * 108.89155 * 40.77601 * 20 19 18 39 39 H 1.09004 * 108.89107 * 301.17767 * 21 20 19 40 40 H 1.08997 * 108.89032 * 182.69446 * 21 20 19 41 41 H 1.08995 * 109.63531 * 93.18216 * 22 14 13 42 42 H 1.08999 * 109.62807 * 213.57186 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 7 2.1984 -5.9794 -0.0027 14 6 1.5080 -7.2624 -0.1903 15 6 0.4680 -7.4310 0.9193 16 8 -0.5488 -6.4375 0.7741 17 6 0.7864 -7.2458 -1.5514 18 6 1.7360 -7.5085 -2.7350 19 6 3.0496 -6.7887 -2.5916 20 6 4.0642 -7.7466 -1.9342 21 6 3.8975 -7.8257 -0.4906 22 6 2.5143 -8.3764 -0.0876 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6169 -4.9201 -0.8919 26 1 0.6175 -4.9213 0.8880 27 1 2.7486 -5.9852 0.8431 28 1 0.9507 -7.3177 1.8900 29 1 0.0200 -8.4223 0.8499 30 1 -1.2431 -6.4842 1.4456 31 1 0.0092 -8.0101 -1.5465 32 1 0.3174 -6.2715 -1.6887 33 1 1.2527 -7.1804 -3.6552 34 1 1.9262 -8.5798 -2.7997 35 1 2.9178 -5.9078 -1.9634 36 1 3.4125 -6.4896 -3.5749 37 1 5.0730 -7.3976 -2.1545 38 1 3.9364 -8.7421 -2.3594 39 1 4.0177 -6.8288 -0.0663 40 1 4.6697 -8.4769 -0.0812 41 1 2.5509 -8.7436 0.9380 42 1 2.2310 -9.1885 -0.7573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713497645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:38 Heat of formation + Delta-G solvation = -78.195246 kcal Electronic energy + Delta-G solvation = -22441.017656 eV Core-core repulsion = 19228.185787 eV Total energy + Delta-G solvation = -3212.831869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15234 -37.77025 -36.60117 -34.15589 -33.60411 -32.19686 -31.21109 -30.82865 -26.60218 -26.00517 -24.80540 -23.74623 -22.33122 -19.89220 -19.16306 -18.35485 -17.81360 -17.18882 -16.10190 -16.04217 -15.37186 -14.94714 -14.59310 -14.14046 -13.93840 -13.59743 -13.46208 -13.34626 -12.92179 -12.75104 -12.10422 -11.99948 -11.87615 -11.80597 -11.41398 -11.26263 -10.99607 -10.82379 -10.56006 -10.33059 -10.19598 -10.14143 -10.11802 -10.01511 -9.91345 -9.81821 -9.39162 -8.26905 -7.84332 -7.60282 -6.31353 -3.71430 3.24062 3.31560 3.37634 4.06443 4.17334 4.21234 4.45301 4.82685 4.85881 5.07610 5.17963 5.31544 5.35299 5.38123 5.43852 5.46989 5.52244 5.53091 5.68792 5.75995 5.87476 6.02502 6.14083 6.25052 6.29635 6.36094 6.39078 6.45980 6.48561 6.57064 6.63725 6.67222 6.82020 7.20875 7.43218 7.59305 7.64457 7.82135 8.18793 8.75033 9.29753 9.69219 10.22028 10.86714 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.005032 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.653853 B = 5562.513463 C = 6056.880254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.296 4.296 8 H 0.101 0.899 9 N -0.569 5.569 10 C 0.442 3.558 11 O -0.587 6.587 12 C 0.042 3.958 13 N -0.644 5.644 14 C 0.123 3.877 15 C 0.044 3.956 16 O -0.556 6.556 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.117 4.117 22 C -0.106 4.106 23 H 0.269 0.731 24 H 0.392 0.608 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.342 0.658 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.370 0.630 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 -17.286 0.265 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.426 4.426 8 H 0.119 0.881 9 N -0.206 5.206 10 C 0.228 3.772 11 O -0.471 6.471 12 C -0.089 4.089 13 N -0.276 5.276 14 C 0.031 3.969 15 C -0.035 4.035 16 O -0.362 6.362 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.171 4.171 20 C -0.138 4.138 21 C -0.155 4.155 22 C -0.144 4.144 23 H 0.079 0.921 24 H 0.225 0.775 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.217 0.783 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.176 -16.872 -0.903 16.897 hybrid contribution -1.107 0.470 1.354 1.811 sum -0.931 -16.402 0.451 16.435 Atomic orbital electron populations 1.69619 1.05877 1.27878 1.51240 1.25225 0.95595 0.99562 0.97706 0.85896 0.79193 0.81087 0.78311 1.20506 1.21059 1.19538 1.19686 0.93284 0.82432 1.47155 0.88110 1.41870 1.09165 1.04591 1.64942 1.20156 0.88415 0.85052 0.83596 1.90501 1.13934 1.87362 1.55291 1.21992 0.94030 0.89667 1.03216 1.60623 1.23347 1.00294 1.43373 1.20757 0.91066 0.91085 0.94023 1.23297 0.90359 0.91008 0.98875 1.86755 1.37918 1.54663 1.56839 1.21910 0.96858 1.02468 0.92470 1.21233 0.96624 0.99529 0.97099 1.21589 0.93563 1.01431 1.00560 1.20274 0.99232 0.98348 0.95961 1.20390 0.94563 1.03217 0.97339 1.21370 0.95555 0.96657 1.00814 0.92068 0.77528 0.89332 0.91255 0.83738 0.93975 0.93941 0.78306 0.92872 0.90728 0.93119 0.93351 0.86630 0.93698 0.93076 0.94065 0.88606 0.93774 0.92409 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 13.05 55.50 0.72 -24.53 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.57 -14.85 5.29 -10.96 -0.06 -14.91 16 10 C 0.44 10.66 7.84 -10.98 -0.09 10.57 16 11 O -0.59 -16.01 15.94 5.54 0.09 -15.93 16 12 C 0.04 0.78 4.60 -4.98 -0.02 0.75 16 13 N -0.64 -10.12 1.57 -101.94 -0.16 -10.28 16 14 C 0.12 1.53 0.53 -132.31 -0.07 1.46 16 15 C 0.04 0.49 5.47 37.16 0.20 0.69 16 16 O -0.56 -6.57 9.43 -35.23 -0.33 -6.90 16 17 C -0.10 -1.30 4.32 -25.65 -0.11 -1.41 16 18 C -0.11 -1.38 5.31 -27.47 -0.15 -1.53 16 19 C -0.13 -1.96 5.61 -27.34 -0.15 -2.11 16 20 C -0.10 -1.30 5.26 -29.59 -0.16 -1.46 16 21 C -0.12 -1.46 5.14 -29.60 -0.15 -1.61 16 22 C -0.11 -1.17 4.99 -27.35 -0.14 -1.30 16 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.39 9.93 7.90 -40.82 -0.32 9.60 16 25 H 0.09 1.63 5.59 -51.93 -0.29 1.34 16 26 H 0.07 1.22 5.73 -51.93 -0.30 0.92 16 27 H 0.34 5.51 7.51 -39.29 -0.30 5.22 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.37 2.90 9.12 45.56 0.42 3.32 16 31 H 0.05 0.63 7.98 -51.93 -0.41 0.21 16 32 H 0.07 1.13 5.39 -51.93 -0.28 0.85 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.56 6.63 -51.93 -0.34 0.22 16 35 H 0.12 2.08 5.54 -51.93 -0.29 1.79 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.48 7.47 -51.93 -0.39 0.09 16 39 H 0.10 1.42 5.45 -51.93 -0.28 1.14 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16 42 H 0.07 0.70 6.99 -51.93 -0.36 0.33 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -31.24 313.73 -6.70 -37.95 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -5.60 Total: 17.42 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.07 Total: -4.09 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.51 Total: -49.72 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.24 Total: -22.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.24 -6.70 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713497645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.250 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds