Wall clock time and date at job start Mon Mar 30 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47118 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46842 * 30.00132 * 3 2 1 6 6 H 1.48501 * 109.46961 * 150.00117 * 3 2 1 7 7 C 1.38953 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99692 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99676 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00322 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99894 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47289 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00492 * 187.83804 * 13 12 10 15 15 C 1.53007 * 108.85093 * 302.44502 * 14 13 12 16 16 O 1.42902 * 109.47146 * 65.67850 * 15 14 13 17 17 C 1.54067 * 108.87836 * 61.00193 * 14 13 12 18 18 C 1.54000 * 112.85272 * 78.86834 * 17 14 13 19 19 C 1.50475 * 112.54799 * 318.44021 * 18 17 14 20 20 C 1.54249 * 108.52816 * 94.06921 * 19 18 17 21 21 C 1.45542 * 112.40138 * 280.02650 * 20 19 18 22 22 C 1.50472 * 108.88091 * 183.88957 * 14 13 12 23 23 H 0.97004 * 120.00090 * 359.97438 * 1 2 3 24 24 H 0.97001 * 120.00265 * 0.02562 * 9 7 2 25 25 H 1.08993 * 109.47299 * 60.00275 * 12 10 9 26 26 H 1.09000 * 109.47479 * 299.99918 * 12 10 9 27 27 H 1.00898 * 111.00037 * 63.87869 * 13 12 10 28 28 H 1.08997 * 109.47283 * 305.67736 * 15 14 13 29 29 H 1.09002 * 109.47307 * 185.67858 * 15 14 13 30 30 H 0.96698 * 114.00198 * 180.02562 * 16 15 14 31 31 H 1.09007 * 108.81237 * 199.82624 * 17 14 13 32 32 H 1.09001 * 108.81203 * 318.10397 * 17 14 13 33 33 H 1.08999 * 108.91333 * 197.60699 * 18 17 14 34 34 H 1.08999 * 108.71504 * 79.13596 * 18 17 14 35 35 H 1.09000 * 109.63054 * 334.36335 * 19 18 17 36 36 H 1.08995 * 109.63124 * 213.77956 * 19 18 17 37 37 H 1.08993 * 108.89510 * 159.26779 * 20 19 18 38 38 H 1.09003 * 108.89155 * 40.77601 * 20 19 18 39 39 H 1.09004 * 108.89107 * 301.17767 * 21 20 19 40 40 H 1.08997 * 108.89032 * 182.69446 * 21 20 19 41 41 H 1.08995 * 109.63531 * 93.18216 * 22 14 13 42 42 H 1.08999 * 109.62807 * 213.57186 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 7 2.1984 -5.9794 -0.0027 14 6 1.5080 -7.2624 -0.1903 15 6 0.4680 -7.4310 0.9193 16 8 -0.5488 -6.4375 0.7741 17 6 0.7864 -7.2458 -1.5514 18 6 1.7360 -7.5085 -2.7350 19 6 3.0496 -6.7887 -2.5916 20 6 4.0642 -7.7466 -1.9342 21 6 3.8975 -7.8257 -0.4906 22 6 2.5143 -8.3764 -0.0876 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6169 -4.9201 -0.8919 26 1 0.6175 -4.9213 0.8880 27 1 2.7486 -5.9852 0.8431 28 1 0.9507 -7.3177 1.8900 29 1 0.0200 -8.4223 0.8499 30 1 -1.2431 -6.4842 1.4456 31 1 0.0092 -8.0101 -1.5465 32 1 0.3174 -6.2715 -1.6887 33 1 1.2527 -7.1804 -3.6552 34 1 1.9262 -8.5798 -2.7997 35 1 2.9178 -5.9078 -1.9634 36 1 3.4125 -6.4896 -3.5749 37 1 5.0730 -7.3976 -2.1545 38 1 3.9364 -8.7421 -2.3594 39 1 4.0177 -6.8288 -0.0663 40 1 4.6697 -8.4769 -0.0812 41 1 2.5509 -8.7436 0.9380 42 1 2.2310 -9.1885 -0.7573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713497645.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:38 Heat of formation + Delta-G solvation = -100.938692 kcal Electronic energy + Delta-G solvation = -22442.003886 eV Core-core repulsion = 19228.185787 eV Total energy + Delta-G solvation = -3213.818099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26076 -39.66956 -37.53447 -35.96512 -35.04143 -33.27532 -33.13744 -32.16658 -28.06443 -27.23204 -26.01250 -25.36537 -23.33315 -21.03459 -20.95134 -19.87719 -19.40757 -18.21526 -17.61283 -17.18800 -16.72504 -16.34070 -16.11436 -15.79293 -15.53846 -14.92402 -14.72335 -14.47882 -14.28303 -13.79861 -13.59865 -13.52051 -13.11532 -13.06525 -12.87199 -12.83611 -12.43473 -12.38356 -12.11132 -11.85193 -11.63101 -11.46555 -11.17918 -11.17321 -11.02319 -10.99920 -10.78656 -10.18414 -9.95662 -8.85878 -8.42653 -5.91107 1.38926 1.41152 1.54419 2.14970 2.31364 3.01170 3.24705 3.33634 3.77830 3.84922 3.92508 4.09789 4.25696 4.36885 4.41932 4.46894 4.54708 4.58089 4.59984 4.70298 4.75495 4.79985 4.93812 4.99886 5.10231 5.21000 5.24996 5.37187 5.43192 5.44600 5.50802 5.52317 5.60818 5.76557 5.98769 6.02156 6.25661 6.59047 6.66488 6.93931 7.17862 7.63990 8.20473 8.74998 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.005032 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.653853 B = 5562.513463 C = 6056.880254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.579 5.579 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.067 3.933 13 N -0.650 5.650 14 C 0.120 3.880 15 C 0.046 3.954 16 O -0.579 6.579 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.136 4.136 20 C -0.098 4.098 21 C -0.117 4.117 22 C -0.099 4.099 23 H 0.276 0.724 24 H 0.394 0.606 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.339 0.661 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.388 0.612 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -18.944 0.634 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.215 4.215 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.216 5.216 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.065 4.065 13 N -0.283 5.283 14 C 0.030 3.970 15 C -0.033 4.033 16 O -0.387 6.387 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.173 4.173 20 C -0.135 4.135 21 C -0.155 4.155 22 C -0.137 4.137 23 H 0.086 0.914 24 H 0.227 0.773 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.526 -18.555 -0.527 18.570 hybrid contribution -0.893 0.940 1.214 1.777 sum -1.419 -17.615 0.687 17.685 Atomic orbital electron populations 1.69687 1.06842 1.29092 1.50851 1.26029 0.96537 1.02359 0.96547 0.84937 0.77879 0.76978 0.78570 1.19786 1.19471 1.19774 1.19660 0.92600 0.84220 1.49631 0.90511 1.41954 1.09164 1.04791 1.65716 1.21263 0.88331 0.86440 0.81405 1.90466 1.15845 1.88155 1.56394 1.21737 0.93551 0.87472 1.03734 1.60617 1.23294 1.01043 1.43326 1.20902 0.91925 0.89778 0.94445 1.23243 0.89959 0.92016 0.98090 1.86667 1.38751 1.55315 1.57939 1.21888 0.97218 1.01588 0.92798 1.21199 0.95429 1.00476 0.97057 1.21527 0.95441 1.00867 0.99496 1.20258 0.98050 0.98762 0.96447 1.20336 0.96322 1.02093 0.96716 1.21356 0.93731 0.96154 1.02443 0.91447 0.77308 0.89274 0.89951 0.84127 0.93494 0.91377 0.76212 0.90917 0.93361 0.93382 0.91162 0.90188 0.94547 0.94097 0.91927 0.91505 0.92166 0.90440 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.63 13.05 21.66 0.28 -51.35 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 3 Si 0.99 44.36 29.55 68.60 2.03 46.39 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.33 -19.58 9.68 84.04 0.81 -18.76 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -31.27 5.29 -306.98 -1.62 -32.90 16 10 C 0.44 21.87 7.84 87.66 0.69 22.56 16 11 O -0.62 -35.48 15.94 -3.08 -0.05 -35.53 16 12 C 0.07 2.47 4.60 85.56 0.39 2.86 16 13 N -0.65 -20.41 1.57 -476.44 -0.75 -21.15 16 14 C 0.12 2.77 0.53 3.07 0.00 2.77 16 15 C 0.05 0.88 5.47 71.98 0.39 1.27 16 16 O -0.58 -12.45 9.43 -148.98 -1.40 -13.85 16 17 C -0.10 -2.36 4.32 31.29 0.14 -2.23 16 18 C -0.10 -2.52 5.31 30.12 0.16 -2.36 16 19 C -0.14 -3.97 5.61 30.20 0.17 -3.80 16 20 C -0.10 -2.41 5.26 28.74 0.15 -2.26 16 21 C -0.12 -2.72 5.14 28.74 0.15 -2.57 16 22 C -0.10 -1.87 4.99 30.20 0.15 -1.72 16 23 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 24 H 0.39 20.54 7.90 -92.71 -0.73 19.81 16 25 H 0.09 3.34 5.59 -2.39 -0.01 3.33 16 26 H 0.08 2.86 5.73 -2.39 -0.01 2.84 16 27 H 0.34 10.98 7.51 -89.70 -0.67 10.31 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.39 5.18 9.12 -74.06 -0.68 4.51 16 31 H 0.07 1.49 7.98 -2.38 -0.02 1.47 16 32 H 0.05 1.44 5.39 -2.39 -0.01 1.42 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.40 6.63 -2.39 -0.02 1.38 16 35 H 0.08 2.97 5.54 -2.39 -0.01 2.96 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.28 7.47 -2.39 -0.02 1.26 16 39 H 0.07 1.98 5.45 -2.38 -0.01 1.97 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.19 7.71 -2.39 -0.02 1.17 16 42 H 0.08 1.36 6.99 -2.39 -0.02 1.34 16 Total: -1.00 -68.97 313.73 1.13 -67.84 By element: Atomic # 1 Polarization: 46.21 SS G_CDS: -1.02 Total: 45.18 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 3.67 Total: -4.63 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -2.09 Total: -105.40 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -1.45 Total: -49.38 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.97 1.13 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713497645.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.101 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds