Wall clock time and date at job start Mon Mar 30 2020 04:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47144 * 2 1 4 4 C 1.50696 * 109.47368 * 120.00386 * 2 1 3 5 5 H 1.08002 * 120.00123 * 119.99842 * 4 2 1 6 6 C 1.37882 * 120.00110 * 299.99899 * 4 2 1 7 7 N 1.31513 * 119.99717 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47009 * 60.00136 * 8 6 4 10 10 H 1.48503 * 109.47053 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47254 * 300.00001 * 8 6 4 12 12 N 1.46501 * 109.47004 * 240.00338 * 2 1 3 13 13 C 1.46506 * 120.00098 * 300.00173 * 12 2 1 14 14 C 1.34771 * 120.00308 * 120.00028 * 12 2 1 15 15 O 1.21593 * 120.00167 * 359.97438 * 14 12 2 16 16 N 1.34780 * 120.00532 * 180.02562 * 14 12 2 17 17 C 1.46496 * 120.00367 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47399 * 180.02562 * 17 16 14 19 19 H 1.09004 * 115.55350 * 29.27461 * 18 17 16 20 20 C 1.53001 * 117.50133 * 243.61395 * 18 17 16 21 21 C 1.52996 * 59.99915 * 252.50626 * 20 18 17 22 22 H 1.09001 * 117.49937 * 252.51048 * 21 20 18 23 23 C 1.50703 * 117.50022 * 107.48911 * 21 20 18 24 24 O 1.20827 * 119.99659 * 291.37429 * 23 21 20 25 25 O 1.34225 * 120.00418 * 111.37906 * 23 21 20 26 26 H 1.09005 * 109.47500 * 59.99479 * 1 2 3 27 27 H 1.09000 * 109.47601 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47315 * 299.99791 * 1 2 3 29 29 H 0.97000 * 119.99959 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47060 * 270.00243 * 13 12 2 31 31 H 1.09004 * 109.47073 * 29.99732 * 13 12 2 32 32 H 1.09000 * 109.47212 * 149.99814 * 13 12 2 33 33 H 0.97000 * 119.99501 * 0.02562 * 16 14 12 34 34 H 1.09004 * 109.47298 * 300.00557 * 17 16 14 35 35 H 1.09000 * 109.47160 * 60.00094 * 17 16 14 36 36 H 1.09004 * 117.49420 * 359.97438 * 20 18 17 37 37 H 1.08996 * 117.50608 * 144.99291 * 20 18 17 38 38 H 0.96693 * 117.00479 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1211 4.0079 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5205 4.0075 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0932 -1.4282 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1286 -1.8912 16 7 3.2419 -0.6707 -3.1842 17 6 4.0837 0.0414 -4.1487 18 6 4.4523 -0.9002 -5.2969 19 1 3.7231 -1.6795 -5.5184 20 6 5.9317 -1.2442 -5.4812 21 6 5.2345 -0.3095 -6.4716 22 1 5.0197 -0.7000 -7.4664 23 6 5.5829 1.1553 -6.4094 24 8 5.2453 1.8166 -5.4561 25 8 6.2680 1.7256 -7.4129 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 0.7096 1.1616 3.4845 30 1 2.4156 -2.7377 -0.9719 31 1 0.6902 -2.3002 -0.9848 32 1 1.6236 -2.2851 -2.5004 33 1 3.0069 -1.5991 -3.3381 34 1 3.5385 0.8989 -4.5433 35 1 4.9922 0.3849 -3.6541 36 1 6.6424 -0.7993 -4.7846 37 1 6.1758 -2.2497 -5.8238 38 1 6.4685 2.6677 -7.3279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715347759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:10 Heat of formation + Delta-G solvation = -83.287781 kcal Electronic energy + Delta-G solvation = -20858.597397 eV Core-core repulsion = 17509.711604 eV Total energy + Delta-G solvation = -3348.885793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77513 -39.27831 -37.68224 -36.04940 -35.27688 -33.76523 -32.54616 -29.34725 -26.96753 -25.92651 -25.29975 -25.07164 -21.83027 -21.04044 -20.60121 -18.82505 -18.39906 -17.43819 -16.72599 -16.16173 -15.88133 -15.52567 -15.07326 -14.78123 -14.36169 -13.96935 -13.48811 -13.35964 -13.00445 -12.68286 -12.47992 -12.18793 -11.80572 -11.72624 -11.45634 -11.42875 -10.99231 -10.95553 -10.75805 -10.64290 -10.58334 -10.35143 -10.17039 -10.06969 -9.18993 -9.01379 -8.49418 -8.34200 -7.39029 -5.98371 -4.05724 1.88538 2.69462 3.25715 3.33107 3.37945 3.40021 3.55782 4.10838 4.31114 4.40906 4.46351 4.55680 4.83929 4.97674 5.06859 5.32250 5.38794 5.42945 5.62866 5.71358 6.04211 6.12443 6.18440 6.32618 6.39911 6.83556 6.90845 7.04250 7.14184 7.30585 7.62127 7.71503 7.81078 7.99733 8.20272 8.33786 8.88814 8.97232 9.47572 9.63712 11.06888 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032316 B = 0.003748 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.247406 B = 7469.656358 C = 7539.323433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.273 3.727 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.612 5.612 13 C 0.092 3.908 14 C 0.698 3.302 15 O -0.594 6.594 16 N -0.759 5.759 17 C 0.174 3.826 18 C -0.127 4.127 19 H 0.125 0.875 20 C -0.142 4.142 21 C -0.161 4.161 22 H 0.138 0.862 23 C 0.499 3.501 24 O -0.494 6.494 25 O -0.517 6.517 26 H 0.011 0.989 27 H 0.028 0.972 28 H 0.093 0.907 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.389 0.611 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -6.464 -19.254 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.082 0.918 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.347 5.347 13 C -0.052 4.052 14 C 0.399 3.601 15 O -0.472 6.472 16 N -0.419 5.419 17 C 0.050 3.950 18 C -0.145 4.145 19 H 0.143 0.857 20 C -0.179 4.179 21 C -0.181 4.181 22 H 0.156 0.844 23 C 0.341 3.659 24 O -0.380 6.380 25 O -0.330 6.330 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.223 0.777 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 6.964 -5.685 -18.692 20.741 hybrid contribution 0.345 -0.412 0.686 0.871 sum 7.310 -6.097 -18.006 20.367 Atomic orbital electron populations 1.22107 0.98485 0.99181 1.00770 1.18812 0.90471 0.94346 0.79171 0.91840 1.21332 1.31569 1.12882 0.90416 0.92440 1.24891 0.95066 0.95026 0.98882 1.69876 1.36534 1.22632 1.23715 0.86560 0.79209 0.79512 0.82090 1.20320 1.21229 1.20325 1.47517 1.51695 1.11376 1.24157 1.21417 1.01628 0.83844 0.98345 1.15960 0.79495 0.84951 0.79664 1.90880 1.63230 1.15772 1.77303 1.45352 1.56935 1.15300 1.24280 1.20759 0.95305 0.92542 0.86372 1.22713 0.95455 1.00936 0.95417 0.85710 1.23243 0.95827 0.99350 0.99520 1.21743 1.08840 0.88877 0.98594 0.84390 1.22399 0.74362 0.89716 0.79409 1.90866 1.49761 1.64401 1.32983 1.84471 1.69247 1.31706 1.47565 0.97008 0.95244 0.88844 0.92723 0.93686 0.90852 0.93812 0.77663 0.90406 0.91209 0.87556 0.86821 0.72909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.95 37.15 0.33 -3.31 16 2 C 0.27 7.31 2.64 -69.09 -0.18 7.13 16 3 H 0.06 1.99 6.90 -51.93 -0.36 1.63 16 4 C -0.52 -14.64 8.37 -34.44 -0.29 -14.93 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.61 -13.82 2.75 -181.00 -0.50 -14.32 16 13 C 0.09 1.59 9.44 59.85 0.57 2.15 16 14 C 0.70 15.88 8.28 -86.92 -0.72 15.16 16 15 O -0.59 -16.37 15.67 5.28 0.08 -16.29 16 16 N -0.76 -12.69 5.42 -65.23 -0.35 -13.04 16 17 C 0.17 2.65 4.22 -4.05 -0.02 2.64 16 18 C -0.13 -1.21 5.85 -90.62 -0.53 -1.74 16 19 H 0.13 0.91 8.04 -51.93 -0.42 0.49 16 20 C -0.14 -1.10 9.88 -26.73 -0.26 -1.36 16 21 C -0.16 -1.34 6.30 -91.77 -0.58 -1.91 16 22 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 23 C 0.50 5.34 8.09 36.01 0.29 5.63 16 24 O -0.49 -7.35 13.87 -18.75 -0.26 -7.61 16 25 O -0.52 -4.14 13.42 -39.24 -0.53 -4.67 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 28 H 0.09 2.53 6.07 -51.92 -0.32 2.21 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 32 H 0.04 0.58 6.36 -51.93 -0.33 0.25 16 33 H 0.39 5.13 6.13 -40.82 -0.25 4.88 16 34 H 0.08 1.37 6.93 -51.93 -0.36 1.01 16 35 H 0.07 1.22 7.30 -51.93 -0.38 0.84 16 36 H 0.11 0.94 8.03 -51.93 -0.42 0.52 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.41 1.75 9.10 45.56 0.41 2.17 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -36.44 317.11 -6.97 -43.42 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.32 Total: 5.31 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -1.48 Total: 11.13 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.22 Total: -52.60 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.70 Total: -28.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.44 -6.97 -43.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715347759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.869 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds