Wall clock time and date at job start Mon Mar 30 2020 04:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47144 * 2 1 4 4 C 1.50696 * 109.47368 * 120.00386 * 2 1 3 5 5 H 1.08002 * 120.00123 * 119.99842 * 4 2 1 6 6 C 1.37882 * 120.00110 * 299.99899 * 4 2 1 7 7 N 1.31513 * 119.99717 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47009 * 60.00136 * 8 6 4 10 10 H 1.48503 * 109.47053 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47254 * 300.00001 * 8 6 4 12 12 N 1.46501 * 109.47004 * 240.00338 * 2 1 3 13 13 C 1.46506 * 120.00098 * 300.00173 * 12 2 1 14 14 C 1.34771 * 120.00308 * 120.00028 * 12 2 1 15 15 O 1.21593 * 120.00167 * 359.97438 * 14 12 2 16 16 N 1.34780 * 120.00532 * 180.02562 * 14 12 2 17 17 C 1.46496 * 120.00367 * 179.97438 * 16 14 12 18 18 C 1.52993 * 109.47399 * 180.02562 * 17 16 14 19 19 H 1.09004 * 115.55350 * 29.27461 * 18 17 16 20 20 C 1.53001 * 117.50133 * 243.61395 * 18 17 16 21 21 C 1.52996 * 59.99915 * 252.50626 * 20 18 17 22 22 H 1.09001 * 117.49937 * 252.51048 * 21 20 18 23 23 C 1.50703 * 117.50022 * 107.48911 * 21 20 18 24 24 O 1.20827 * 119.99659 * 291.37429 * 23 21 20 25 25 O 1.34225 * 120.00418 * 111.37906 * 23 21 20 26 26 H 1.09005 * 109.47500 * 59.99479 * 1 2 3 27 27 H 1.09000 * 109.47601 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47315 * 299.99791 * 1 2 3 29 29 H 0.97000 * 119.99959 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47060 * 270.00243 * 13 12 2 31 31 H 1.09004 * 109.47073 * 29.99732 * 13 12 2 32 32 H 1.09000 * 109.47212 * 149.99814 * 13 12 2 33 33 H 0.97000 * 119.99501 * 0.02562 * 16 14 12 34 34 H 1.09004 * 109.47298 * 300.00557 * 17 16 14 35 35 H 1.09000 * 109.47160 * 60.00094 * 17 16 14 36 36 H 1.09004 * 117.49420 * 359.97438 * 20 18 17 37 37 H 1.08996 * 117.50608 * 144.99291 * 20 18 17 38 38 H 0.96693 * 117.00479 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3214 -1.1206 4.0078 9 1 3.8064 -1.1211 4.0079 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5205 4.0075 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0932 -1.4282 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1286 -1.8912 16 7 3.2419 -0.6707 -3.1842 17 6 4.0837 0.0414 -4.1487 18 6 4.4523 -0.9002 -5.2969 19 1 3.7231 -1.6795 -5.5184 20 6 5.9317 -1.2442 -5.4812 21 6 5.2345 -0.3095 -6.4716 22 1 5.0197 -0.7000 -7.4664 23 6 5.5829 1.1553 -6.4094 24 8 5.2453 1.8166 -5.4561 25 8 6.2680 1.7256 -7.4129 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 0.7096 1.1616 3.4845 30 1 2.4156 -2.7377 -0.9719 31 1 0.6902 -2.3002 -0.9848 32 1 1.6236 -2.2851 -2.5004 33 1 3.0069 -1.5991 -3.3381 34 1 3.5385 0.8989 -4.5433 35 1 4.9922 0.3849 -3.6541 36 1 6.6424 -0.7993 -4.7846 37 1 6.1758 -2.2497 -5.8238 38 1 6.4685 2.6677 -7.3279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715347759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:10 Heat of formation + Delta-G solvation = -111.171242 kcal Electronic energy + Delta-G solvation = -20859.806514 eV Core-core repulsion = 17509.711604 eV Total energy + Delta-G solvation = -3350.094910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65255 -40.94964 -38.54051 -37.17822 -36.87629 -35.40633 -34.46970 -31.27494 -28.24249 -27.45886 -27.19954 -26.13388 -23.13691 -22.39911 -21.53449 -20.45204 -19.25443 -18.89716 -18.40611 -17.66381 -17.15853 -16.77659 -16.47716 -16.39731 -15.73517 -15.12182 -14.93846 -14.75675 -14.48391 -14.29861 -13.76933 -13.51480 -13.41913 -13.04965 -12.89980 -12.69274 -12.63692 -12.60332 -12.43212 -12.15123 -12.09989 -11.69245 -11.46672 -11.26480 -11.17009 -11.01030 -10.49936 -10.07427 -9.17305 -8.11478 -6.28533 1.07555 1.42196 1.45536 1.52812 1.86592 2.06693 2.31241 2.44621 2.69919 3.15642 3.21559 3.65098 3.73542 3.83086 4.24939 4.38789 4.40424 4.61031 4.68094 4.79696 4.81304 4.86564 4.91030 5.00579 5.03909 5.09606 5.14300 5.45191 5.57041 5.59079 5.67351 5.72570 6.03464 6.19109 6.35921 6.79617 6.99506 7.26090 7.39670 7.78597 8.92714 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032316 B = 0.003748 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.247406 B = 7469.656358 C = 7539.323433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.276 3.724 3 H 0.003 0.997 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.260 1.260 12 N -0.618 5.618 13 C 0.087 3.913 14 C 0.688 3.312 15 O -0.654 6.654 16 N -0.731 5.731 17 C 0.179 3.821 18 C -0.135 4.135 19 H 0.161 0.839 20 C -0.125 4.125 21 C -0.154 4.154 22 H 0.177 0.823 23 C 0.497 3.503 24 O -0.549 6.549 25 O -0.508 6.508 26 H 0.017 0.983 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.410 0.590 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.154 0.846 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 -9.973 -20.938 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.174 3.826 3 H 0.021 0.979 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.184 1.184 12 N -0.353 5.353 13 C -0.056 4.056 14 C 0.389 3.611 15 O -0.537 6.537 16 N -0.391 5.391 17 C 0.055 3.945 18 C -0.153 4.153 19 H 0.179 0.821 20 C -0.162 4.162 21 C -0.173 4.173 22 H 0.194 0.806 23 C 0.341 3.659 24 O -0.439 6.439 25 O -0.322 6.322 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.249 0.751 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.172 0.828 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 7.473 -9.268 -20.454 23.667 hybrid contribution 0.251 0.763 1.124 1.382 sum 7.723 -8.505 -19.330 22.486 Atomic orbital electron populations 1.21883 0.97081 1.00216 0.99817 1.18417 0.91472 0.91776 0.80969 0.97912 1.21578 1.31874 1.13071 0.91174 0.92131 1.25781 0.95107 0.95687 1.02103 1.70032 1.37421 1.23934 1.24456 0.85466 0.78268 0.79052 0.77938 1.20454 1.20885 1.18408 1.47405 1.51595 1.13377 1.22913 1.21719 1.01791 0.80463 1.01599 1.16285 0.79524 0.84431 0.80898 1.90835 1.65315 1.18740 1.78840 1.45075 1.55685 1.16012 1.22369 1.20656 0.92992 0.93386 0.87449 1.22616 0.97779 1.01012 0.93932 0.82137 1.23380 0.93678 1.00845 0.98312 1.21983 1.08081 0.87275 1.00004 0.80590 1.23032 0.73330 0.90809 0.78722 1.90873 1.52049 1.65906 1.35107 1.84442 1.68302 1.33106 1.46340 0.96381 0.93013 0.91333 0.92658 0.92737 0.90791 0.89207 0.75089 0.93509 0.94472 0.89417 0.82835 0.71199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 8.95 71.98 0.64 -5.98 16 2 C 0.28 15.30 2.64 44.24 0.12 15.42 16 3 H 0.00 0.19 6.90 -2.39 -0.02 0.18 16 4 C -0.54 -30.50 8.37 25.60 0.21 -30.29 16 5 H 0.06 3.31 7.65 -2.91 -0.02 3.29 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.85 11.32 21.45 0.24 -54.61 16 8 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 12 N -0.62 -28.06 2.75 -844.83 -2.33 -30.38 16 13 C 0.09 2.77 9.44 127.77 1.21 3.98 16 14 C 0.69 32.12 8.28 179.06 1.48 33.61 16 15 O -0.65 -38.51 15.67 -4.01 -0.06 -38.57 16 16 N -0.73 -23.97 5.42 -478.54 -2.59 -26.56 16 17 C 0.18 5.53 4.22 86.38 0.36 5.90 16 18 C -0.14 -2.22 5.85 -10.80 -0.06 -2.28 16 19 H 0.16 1.52 8.04 -2.38 -0.02 1.50 16 20 C -0.13 -1.52 9.88 30.59 0.30 -1.21 16 21 C -0.15 -2.10 6.30 -11.54 -0.07 -2.17 16 22 H 0.18 1.12 8.14 -2.39 -0.02 1.10 16 23 C 0.50 10.33 8.09 71.24 0.58 10.91 16 24 O -0.55 -17.28 13.87 21.96 0.30 -16.97 16 25 O -0.51 -7.46 13.42 -51.37 -0.69 -8.15 16 26 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.05 2.32 6.66 -2.39 -0.02 2.30 16 28 H 0.07 3.81 6.07 -2.38 -0.01 3.80 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.38 6.43 -2.38 -0.02 2.36 16 32 H 0.09 2.01 6.36 -2.39 -0.02 1.99 16 33 H 0.41 9.59 6.13 -92.71 -0.57 9.02 16 34 H 0.05 1.75 6.93 -2.38 -0.02 1.73 16 35 H 0.04 1.38 7.30 -2.39 -0.02 1.37 16 36 H 0.09 1.43 8.03 -2.38 -0.02 1.41 16 37 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.43 3.36 9.10 -74.06 -0.67 2.68 16 Total: -1.00 -86.31 317.11 1.98 -84.33 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.14 Total: 15.70 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 5.22 Total: 29.02 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.68 Total: -111.56 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.45 Total: -63.69 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -86.31 1.98 -84.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715347759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.842 kcal (2) G-P(sol) polarization free energy of solvation -86.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds