Wall clock time and date at job start Mon Mar 30 2020 04:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46964 * 2 1 4 4 C 1.34775 * 120.00234 * 274.01838 * 3 2 1 5 5 O 1.21442 * 120.00362 * 185.35510 * 4 3 2 6 6 C 1.48837 * 119.99557 * 5.34966 * 4 3 2 7 7 O 1.21495 * 120.00013 * 5.56121 * 6 4 3 8 8 N 1.34775 * 119.99773 * 185.56052 * 6 4 3 9 9 C 1.36117 * 119.99910 * 180.02562 * 8 6 4 10 10 H 1.08000 * 120.00127 * 359.97438 * 9 8 6 11 11 C 1.39590 * 120.00083 * 180.02562 * 9 8 6 12 12 N 1.31014 * 119.99833 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00171 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47315 * 89.99470 * 13 11 9 15 15 H 1.48501 * 109.47368 * 209.99414 * 13 11 9 16 16 H 1.48500 * 109.47131 * 329.99728 * 13 11 9 17 17 C 1.46508 * 120.00164 * 94.02209 * 3 2 1 18 18 C 1.53181 * 109.54236 * 239.55527 * 17 3 2 19 19 C 1.53083 * 109.16462 * 183.15026 * 18 17 3 20 20 O 1.42903 * 109.41403 * 57.60546 * 19 18 17 21 21 C 1.42899 * 114.10264 * 298.84134 * 20 19 18 22 22 C 1.53098 * 109.41349 * 61.15841 * 21 20 19 23 23 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47037 * 300.00495 * 1 2 3 25 25 H 1.08995 * 109.46859 * 59.99883 * 1 2 3 26 26 H 1.08998 * 109.47501 * 240.00098 * 2 1 3 27 27 H 1.08999 * 109.47156 * 119.99233 * 2 1 3 28 28 H 0.97002 * 120.00014 * 359.97438 * 8 6 4 29 29 H 0.97006 * 120.00312 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.61212 * 359.77163 * 17 3 2 31 31 H 1.08997 * 109.51870 * 303.05539 * 18 17 3 32 32 H 1.09000 * 109.51896 * 63.23930 * 18 17 3 33 33 H 1.09000 * 109.48017 * 297.62947 * 19 18 17 34 34 H 1.08998 * 109.48638 * 177.59138 * 19 18 17 35 35 H 1.08997 * 109.48044 * 301.18193 * 21 20 19 36 36 H 1.08998 * 109.49674 * 181.14720 * 21 20 19 37 37 H 1.08997 * 109.52713 * 182.48763 * 22 21 20 38 38 H 1.09003 * 109.52330 * 62.29643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1658 2.0439 -1.1643 5 8 2.6614 3.1526 -1.1735 6 6 1.7213 1.4168 -2.4388 7 8 1.1347 0.3531 -2.4203 8 7 1.9697 2.0290 -3.6135 9 6 1.5628 1.4558 -4.7791 10 1 1.0413 0.5102 -4.7627 11 6 1.8205 2.0896 -5.9959 12 7 2.4536 3.2365 -6.0159 13 14 1.2627 1.3027 -7.5955 14 1 -0.1075 1.7704 -7.9259 15 1 2.1935 1.6867 -8.6871 16 1 1.2586 -0.1747 -7.4453 17 6 2.3463 2.0423 1.2656 18 6 1.4776 3.2930 1.4307 19 6 1.8817 4.0195 2.7162 20 8 3.2713 4.3479 2.6594 21 6 4.1349 3.2144 2.5528 22 6 3.8213 2.4555 1.2607 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.4378 2.8785 -3.6283 29 1 2.6323 3.6772 -6.8613 30 1 2.1620 1.3584 2.0941 31 1 1.6251 3.9542 0.5769 32 1 0.4287 3.0026 1.4907 33 1 1.6959 3.3722 3.5733 34 1 1.2960 4.9333 2.8169 35 1 3.9785 2.5566 3.4077 36 1 5.1725 3.5479 2.5358 37 1 4.4485 1.5662 1.1991 38 1 4.0162 3.0999 0.4033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716459144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:58 Heat of formation + Delta-G solvation = -111.748660 kcal Electronic energy + Delta-G solvation = -21839.857039 eV Core-core repulsion = 18489.737089 eV Total energy + Delta-G solvation = -3350.119949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.34690 -38.74348 -37.16468 -35.82513 -34.13831 -32.56357 -31.38892 -31.06042 -29.44448 -26.13544 -24.76410 -23.59354 -23.23819 -21.72963 -20.49667 -18.70438 -17.96718 -16.72437 -16.44873 -16.04925 -15.39893 -15.03625 -14.80067 -14.63564 -14.53256 -14.02682 -13.86078 -13.54320 -13.09192 -12.81892 -12.68406 -12.25169 -12.07886 -11.78672 -11.71182 -11.43887 -11.25270 -11.07439 -10.79559 -10.66257 -10.52762 -10.44399 -10.38762 -9.82175 -9.62349 -9.57570 -8.32755 -8.18513 -8.00152 -6.67552 -3.99714 2.44108 3.12678 3.13959 3.18576 3.27254 3.90933 4.02910 4.24403 4.63656 4.83681 5.00244 5.05275 5.15331 5.16989 5.23646 5.35162 5.40638 5.51229 5.63405 5.67181 5.80039 5.90483 5.96251 5.98708 6.07426 6.14042 6.39140 6.45121 6.51721 6.79632 7.06801 7.20924 7.30262 7.68268 7.79477 8.31711 8.60920 8.95904 9.32059 9.85166 10.47252 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028342 B = 0.004985 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.690672 B = 5615.033173 C = 6218.201777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.111 3.889 3 N -0.595 5.595 4 C 0.514 3.486 5 O -0.539 6.539 6 C 0.392 3.608 7 O -0.586 6.586 8 N -0.499 5.499 9 C -0.305 4.305 10 H 0.112 0.888 11 C 0.031 3.969 12 N -0.869 5.869 13 Si 0.938 3.062 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.154 3.846 18 C -0.175 4.175 19 C 0.069 3.931 20 O -0.382 6.382 21 C 0.068 3.932 22 C -0.178 4.178 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.404 0.596 29 H 0.280 0.720 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -2.219 14.129 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.011 4.011 3 N -0.329 5.329 4 C 0.301 3.699 5 O -0.416 6.416 6 C 0.176 3.824 7 O -0.475 6.475 8 N -0.134 5.134 9 C -0.436 4.436 10 H 0.130 0.870 11 C -0.176 4.176 12 N -0.507 5.507 13 Si 0.763 3.237 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.189 1.189 17 C 0.050 3.950 18 C -0.213 4.213 19 C -0.009 4.009 20 O -0.300 6.300 21 C -0.009 4.009 22 C -0.216 4.216 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.127 0.873 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.157 -2.004 13.978 14.122 hybrid contribution -0.168 -0.191 -0.764 0.805 sum -0.011 -2.196 13.215 13.396 Atomic orbital electron populations 1.22101 0.95953 1.01576 1.01800 1.21844 0.95051 0.81192 1.02988 1.47854 1.65472 1.14720 1.04819 1.20720 0.78332 0.85351 0.85511 1.90633 1.43559 1.20294 1.87139 1.18974 0.90469 0.88669 0.84249 1.90517 1.47822 1.23233 1.85918 1.41580 1.46107 1.21254 1.04411 1.19856 1.34771 1.06648 0.82312 0.86997 1.25577 0.96055 0.95606 1.00347 1.69485 1.37242 1.15066 1.28912 0.85738 0.78551 0.79684 0.79678 1.19936 1.20549 1.18932 1.20988 0.94367 0.93737 0.85870 1.22650 0.99713 0.98375 1.00566 1.22504 0.82526 1.00059 0.95769 1.87930 1.16185 1.31629 1.94281 1.22513 0.94614 0.88001 0.95765 1.22725 0.96138 1.01846 1.00939 0.92488 0.94533 0.90573 0.87315 0.92626 0.76095 0.90938 0.90074 0.88647 0.91020 0.93557 0.88855 0.93643 0.88855 0.91134 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.66 37.16 0.36 -2.06 16 2 C 0.11 1.76 5.67 -4.04 -0.02 1.74 16 3 N -0.59 -10.28 2.44 -166.62 -0.41 -10.69 16 4 C 0.51 10.98 7.08 -11.87 -0.08 10.90 16 5 O -0.54 -12.26 12.66 5.42 0.07 -12.19 16 6 C 0.39 9.52 7.58 -11.87 -0.09 9.43 16 7 O -0.59 -14.50 10.95 5.37 0.06 -14.45 16 8 N -0.50 -13.09 5.24 -11.59 -0.06 -13.15 16 9 C -0.31 -8.24 9.67 -15.15 -0.15 -8.39 16 10 H 0.11 3.07 7.15 -52.49 -0.38 2.69 16 11 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 12 N -0.87 -23.18 13.03 55.53 0.72 -22.46 16 13 Si 0.94 19.90 29.56 -169.99 -5.02 14.88 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 C 0.15 2.21 2.64 -67.74 -0.18 2.04 16 18 C -0.17 -2.50 5.38 -26.59 -0.14 -2.64 16 19 C 0.07 0.82 6.84 37.20 0.25 1.08 16 20 O -0.38 -5.35 10.76 -35.23 -0.38 -5.73 16 21 C 0.07 0.82 6.84 37.21 0.25 1.07 16 22 C -0.18 -2.53 5.39 -26.59 -0.14 -2.67 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.45 6.45 -51.93 -0.34 1.11 16 26 H 0.11 2.01 5.84 -51.93 -0.30 1.70 16 27 H 0.06 0.70 7.84 -51.93 -0.41 0.30 16 28 H 0.40 10.79 7.36 -40.82 -0.30 10.49 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 30 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 31 H 0.10 1.70 6.26 -51.93 -0.32 1.38 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.83 5.92 -51.93 -0.31 1.53 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -29.12 306.25 -5.71 -34.84 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -5.27 Total: 13.14 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.04 Total: 11.20 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.26 Total: -46.30 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.25 Total: -32.36 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.12 -5.71 -34.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716459144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.912 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds