Wall clock time and date at job start Mon Mar 30 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46964 * 2 1 4 4 C 1.34775 * 120.00234 * 274.01838 * 3 2 1 5 5 O 1.21442 * 120.00362 * 185.35510 * 4 3 2 6 6 C 1.48837 * 119.99557 * 5.34966 * 4 3 2 7 7 O 1.21495 * 120.00013 * 5.56121 * 6 4 3 8 8 N 1.34775 * 119.99773 * 185.56052 * 6 4 3 9 9 C 1.36117 * 119.99910 * 180.02562 * 8 6 4 10 10 H 1.08000 * 120.00127 * 359.97438 * 9 8 6 11 11 C 1.39590 * 120.00083 * 180.02562 * 9 8 6 12 12 N 1.31014 * 119.99833 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00171 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47315 * 89.99470 * 13 11 9 15 15 H 1.48501 * 109.47368 * 209.99414 * 13 11 9 16 16 H 1.48500 * 109.47131 * 329.99728 * 13 11 9 17 17 C 1.46508 * 120.00164 * 94.02209 * 3 2 1 18 18 C 1.53181 * 109.54236 * 239.55527 * 17 3 2 19 19 C 1.53083 * 109.16462 * 183.15026 * 18 17 3 20 20 O 1.42903 * 109.41403 * 57.60546 * 19 18 17 21 21 C 1.42899 * 114.10264 * 298.84134 * 20 19 18 22 22 C 1.53098 * 109.41349 * 61.15841 * 21 20 19 23 23 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47037 * 300.00495 * 1 2 3 25 25 H 1.08995 * 109.46859 * 59.99883 * 1 2 3 26 26 H 1.08998 * 109.47501 * 240.00098 * 2 1 3 27 27 H 1.08999 * 109.47156 * 119.99233 * 2 1 3 28 28 H 0.97002 * 120.00014 * 359.97438 * 8 6 4 29 29 H 0.97006 * 120.00312 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.61212 * 359.77163 * 17 3 2 31 31 H 1.08997 * 109.51870 * 303.05539 * 18 17 3 32 32 H 1.09000 * 109.51896 * 63.23930 * 18 17 3 33 33 H 1.09000 * 109.48017 * 297.62947 * 19 18 17 34 34 H 1.08998 * 109.48638 * 177.59138 * 19 18 17 35 35 H 1.08997 * 109.48044 * 301.18193 * 21 20 19 36 36 H 1.08998 * 109.49674 * 181.14720 * 21 20 19 37 37 H 1.08997 * 109.52713 * 182.48763 * 22 21 20 38 38 H 1.09003 * 109.52330 * 62.29643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1658 2.0439 -1.1643 5 8 2.6614 3.1526 -1.1735 6 6 1.7213 1.4168 -2.4388 7 8 1.1347 0.3531 -2.4203 8 7 1.9697 2.0290 -3.6135 9 6 1.5628 1.4558 -4.7791 10 1 1.0413 0.5102 -4.7627 11 6 1.8205 2.0896 -5.9959 12 7 2.4536 3.2365 -6.0159 13 14 1.2627 1.3027 -7.5955 14 1 -0.1075 1.7704 -7.9259 15 1 2.1935 1.6867 -8.6871 16 1 1.2586 -0.1747 -7.4453 17 6 2.3463 2.0423 1.2656 18 6 1.4776 3.2930 1.4307 19 6 1.8817 4.0195 2.7162 20 8 3.2713 4.3479 2.6594 21 6 4.1349 3.2144 2.5528 22 6 3.8213 2.4555 1.2607 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.4378 2.8785 -3.6283 29 1 2.6323 3.6772 -6.8613 30 1 2.1620 1.3584 2.0941 31 1 1.6251 3.9542 0.5769 32 1 0.4287 3.0026 1.4907 33 1 1.6959 3.3722 3.5733 34 1 1.2960 4.9333 2.8169 35 1 3.9785 2.5566 3.4077 36 1 5.1725 3.5479 2.5358 37 1 4.4485 1.5662 1.1991 38 1 4.0162 3.0999 0.4033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716459144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:57 Heat of formation + Delta-G solvation = -132.486111 kcal Electronic energy + Delta-G solvation = -21840.756282 eV Core-core repulsion = 18489.737089 eV Total energy + Delta-G solvation = -3351.019193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85261 -40.12340 -38.85816 -37.38813 -36.00114 -33.81826 -33.35912 -32.06304 -30.79349 -27.95852 -26.23646 -24.78923 -24.44285 -23.29198 -21.70862 -20.55161 -19.74093 -18.37190 -17.78063 -17.14023 -17.05919 -16.53661 -16.30076 -16.12115 -15.77582 -15.57108 -15.19359 -15.10009 -14.50332 -14.37483 -14.22094 -13.63320 -13.43446 -13.27110 -13.04362 -12.97658 -12.62866 -12.52967 -12.16496 -12.11673 -12.03065 -11.89609 -11.82654 -11.46742 -11.10119 -10.63401 -10.21061 -9.83318 -9.70133 -8.63104 -6.07319 0.65913 1.40193 1.46276 1.54725 1.74800 2.27242 2.39566 2.98696 3.08395 3.17987 3.71855 3.79063 4.02341 4.03437 4.06066 4.22281 4.32337 4.40818 4.50424 4.53641 4.62358 4.69066 4.76514 4.87249 4.91283 5.05499 5.17186 5.21218 5.25411 5.27725 5.47904 5.71447 5.75734 6.17267 6.29175 6.37498 6.82223 7.03617 7.33315 7.85014 8.53026 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028342 B = 0.004985 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.690672 B = 5615.033173 C = 6218.201777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 N -0.580 5.580 4 C 0.514 3.486 5 O -0.558 6.558 6 C 0.391 3.609 7 O -0.590 6.590 8 N -0.519 5.519 9 C -0.341 4.341 10 H 0.100 0.900 11 C -0.008 4.008 12 N -0.902 5.902 13 Si 1.008 2.992 14 H -0.267 1.267 15 H -0.269 1.269 16 H -0.262 1.262 17 C 0.147 3.853 18 C -0.173 4.173 19 C 0.071 3.929 20 O -0.406 6.406 21 C 0.070 3.930 22 C -0.176 4.176 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.397 0.603 29 H 0.286 0.714 30 H 0.126 0.874 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -3.502 16.450 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.313 5.313 4 C 0.299 3.701 5 O -0.437 6.437 6 C 0.176 3.824 7 O -0.479 6.479 8 N -0.154 5.154 9 C -0.470 4.470 10 H 0.118 0.882 11 C -0.211 4.211 12 N -0.540 5.540 13 Si 0.830 3.170 14 H -0.192 1.192 15 H -0.194 1.194 16 H -0.186 1.186 17 C 0.045 3.955 18 C -0.211 4.211 19 C -0.006 4.006 20 O -0.325 6.325 21 C -0.007 4.007 22 C -0.215 4.215 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.231 0.769 29 H 0.096 0.904 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.169 -3.310 16.341 16.674 hybrid contribution -0.078 0.161 -1.314 1.326 sum -0.246 -3.149 15.027 15.355 Atomic orbital electron populations 1.22004 0.95472 1.02479 1.00795 1.21954 0.95410 0.80203 1.03894 1.47954 1.63611 1.15091 1.04609 1.20210 0.78847 0.85240 0.85839 1.90644 1.44580 1.21057 1.87456 1.19692 0.89233 0.88372 0.85128 1.90510 1.47452 1.23385 1.86549 1.41676 1.47278 1.21328 1.05071 1.19931 1.36630 1.07000 0.83477 0.88243 1.26507 0.95483 0.95870 1.03249 1.69565 1.38126 1.16238 1.30102 0.84715 0.78387 0.78685 0.75259 1.19164 1.19369 1.18641 1.21385 0.94504 0.94526 0.85084 1.22606 1.00380 0.97776 1.00355 1.22620 0.81709 1.00961 0.95301 1.87909 1.17280 1.33066 1.94274 1.22633 0.94832 0.87801 0.95386 1.22670 0.96288 1.01787 1.00749 0.90685 0.92070 0.94900 0.90399 0.87730 0.76918 0.90358 0.85659 0.93118 0.90062 0.90058 0.88036 0.90140 0.88022 0.89950 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.66 71.98 0.70 -3.62 16 2 C 0.11 3.14 5.67 86.38 0.49 3.63 16 3 N -0.58 -19.36 2.44 -799.40 -1.95 -21.31 16 4 C 0.51 22.53 7.08 87.08 0.62 23.14 16 5 O -0.56 -26.58 12.66 -3.53 -0.04 -26.62 16 6 C 0.39 19.80 7.58 87.08 0.66 20.46 16 7 O -0.59 -30.18 10.95 -3.70 -0.04 -30.22 16 8 N -0.52 -28.67 5.24 -308.87 -1.62 -30.29 16 9 C -0.34 -19.18 9.67 84.35 0.82 -18.36 16 10 H 0.10 5.70 7.15 -2.91 -0.02 5.68 16 11 C -0.01 -0.41 5.51 85.14 0.47 0.06 16 12 N -0.90 -49.54 13.03 21.77 0.28 -49.26 16 13 Si 1.01 41.28 29.56 68.60 2.03 43.31 16 14 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 15 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 C 0.15 3.82 2.64 45.11 0.12 3.94 16 18 C -0.17 -4.65 5.38 30.68 0.17 -4.48 16 19 C 0.07 1.49 6.84 72.01 0.49 1.98 16 20 O -0.41 -10.47 10.76 -148.98 -1.60 -12.07 16 21 C 0.07 1.46 6.84 72.01 0.49 1.96 16 22 C -0.18 -4.71 5.39 30.69 0.17 -4.54 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.03 1.23 6.45 -2.39 -0.02 1.21 16 26 H 0.08 2.83 5.84 -2.39 -0.01 2.81 16 27 H 0.10 2.13 7.84 -2.39 -0.02 2.11 16 28 H 0.40 22.56 7.36 -92.71 -0.68 21.88 16 29 H 0.29 14.46 8.30 -92.70 -0.77 13.69 16 30 H 0.13 2.25 7.75 -2.39 -0.02 2.23 16 31 H 0.05 1.84 6.26 -2.39 -0.01 1.83 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 2.12 5.92 -2.39 -0.01 2.10 16 Total: -1.00 -67.45 306.25 2.63 -64.82 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.40 Total: 37.48 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 5.18 Total: 24.17 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.29 Total: -100.86 kcal Atomic # 8 Polarization: -67.22 SS G_CDS: -1.69 Total: -68.91 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -67.45 2.63 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716459144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.667 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds