Wall clock time and date at job start Mon Mar 30 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47306 * 2 1 4 4 H 1.09006 * 109.47357 * 184.86970 * 3 2 1 5 5 C 1.50693 * 109.47435 * 304.87400 * 3 2 1 6 6 H 1.08004 * 120.00499 * 119.72160 * 5 3 2 7 7 C 1.37880 * 119.99776 * 299.99638 * 5 3 2 8 8 N 1.31511 * 120.00356 * 359.72556 * 7 5 3 9 9 Si 1.86800 * 120.00126 * 179.72422 * 7 5 3 10 10 H 1.48504 * 109.47379 * 89.99956 * 9 7 5 11 11 H 1.48501 * 109.47376 * 210.00427 * 9 7 5 12 12 H 1.48498 * 109.47130 * 330.00078 * 9 7 5 13 13 N 1.46901 * 109.46982 * 64.87231 * 3 2 1 14 14 C 1.46897 * 111.00227 * 85.96908 * 13 3 2 15 15 H 1.08999 * 109.46901 * 323.44351 * 14 13 3 16 16 C 1.53001 * 109.47037 * 83.44045 * 14 13 3 17 17 C 1.50705 * 109.47409 * 203.44272 * 14 13 3 18 18 O 1.21284 * 119.99848 * 352.86344 * 17 14 13 19 19 N 1.34769 * 120.00025 * 172.86867 * 17 14 13 20 20 C 1.47152 * 120.98315 * 185.35788 * 19 17 14 21 21 C 1.53715 * 108.16429 * 129.42844 * 20 19 17 22 22 O 1.42964 * 109.14329 * 52.54278 * 21 20 19 23 23 C 1.42963 * 114.16335 * 297.28512 * 22 21 20 24 24 C 1.47154 * 120.98485 * 5.63859 * 19 17 14 25 25 H 1.08998 * 109.46790 * 302.91481 * 1 2 3 26 26 H 1.08994 * 109.47204 * 62.91686 * 1 2 3 27 27 H 1.09005 * 109.46924 * 182.91929 * 1 2 3 28 28 H 1.09008 * 109.47102 * 240.00313 * 2 1 3 29 29 H 1.09005 * 109.47247 * 120.00733 * 2 1 3 30 30 H 0.96995 * 120.00493 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00262 * 322.01549 * 13 3 2 32 32 H 1.09000 * 109.47397 * 64.62712 * 16 14 13 33 33 H 1.09004 * 109.46983 * 184.62857 * 16 14 13 34 34 H 1.08996 * 109.47352 * 304.62487 * 16 14 13 35 35 H 1.08995 * 109.68263 * 249.21134 * 20 19 17 36 36 H 1.09003 * 109.67971 * 9.76325 * 20 19 17 37 37 H 1.08996 * 109.65686 * 292.57552 * 21 20 19 38 38 H 1.08999 * 109.48408 * 172.39744 * 21 20 19 39 39 H 1.09004 * 109.51521 * 302.65849 * 23 22 21 40 40 H 1.09003 * 109.55210 * 182.53704 * 23 22 21 41 41 H 1.09003 * 109.67865 * 350.23658 * 24 19 17 42 42 H 1.09002 * 109.68202 * 110.75327 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1266 1.4436 -0.0872 5 6 1.4416 2.1869 -1.1656 6 1 0.8280 3.0585 -0.9921 7 6 1.6729 1.7519 -2.4534 8 7 2.4201 0.6905 -2.6648 9 14 0.9248 2.6701 -3.8979 10 1 1.8633 3.7278 -4.3517 11 1 0.6733 1.7204 -5.0115 12 1 -0.3569 3.2921 -3.4789 13 7 1.6488 2.1001 1.2539 14 6 2.6331 1.8418 2.3133 15 1 3.0142 0.8254 2.2151 16 6 3.7902 2.8348 2.1875 17 6 1.9761 2.0040 3.6599 18 8 0.8429 2.4297 3.7344 19 7 2.6479 1.6761 4.7813 20 6 1.9900 1.7144 6.0970 21 6 2.2494 0.3731 6.8017 22 8 3.6542 0.1079 6.8024 23 6 4.2226 -0.0396 5.4990 24 6 4.0627 1.2751 4.7269 25 1 -0.3633 0.5584 0.8627 26 1 -0.3633 0.4678 -0.9149 27 1 -0.3633 -1.0264 0.0523 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 2.5831 0.3847 -3.5707 31 1 0.7252 1.8121 1.5405 32 1 3.4231 3.8453 2.3672 33 1 4.5590 2.5917 2.9210 34 1 4.2130 2.7749 1.1846 35 1 2.4031 2.5300 6.6904 36 1 0.9177 1.8608 5.9671 37 1 1.7283 -0.4253 6.2735 38 1 1.8884 0.4263 7.8288 39 1 3.7087 -0.8396 4.9660 40 1 5.2813 -0.2830 5.5881 41 1 4.3636 1.1304 3.6893 42 1 4.6810 2.0475 5.1842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228121149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:48 Heat of formation + Delta-G solvation = -70.495486 kcal Electronic energy + Delta-G solvation = -22128.256573 eV Core-core repulsion = 18915.758590 eV Total energy + Delta-G solvation = -3212.497983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43177 -38.47416 -36.42384 -34.86231 -33.30211 -31.70500 -31.01734 -28.67739 -27.84169 -26.15760 -24.43096 -23.79232 -23.13134 -21.41350 -19.42188 -18.85280 -17.36421 -16.69766 -16.21261 -15.91028 -15.61357 -15.30067 -14.94132 -14.71426 -14.47316 -13.94197 -13.33124 -13.08794 -13.00658 -12.58892 -12.45953 -12.12052 -12.02700 -11.73297 -11.55470 -11.50520 -11.23162 -10.89947 -10.83106 -10.74659 -10.52082 -10.34514 -9.99786 -9.89679 -9.58656 -9.35938 -8.97213 -8.62900 -8.33539 -7.26964 -5.97829 -3.98418 2.79566 2.84283 3.34091 3.40533 3.45730 3.57289 4.44221 4.50317 4.59065 4.78601 4.86022 4.99057 5.05432 5.14146 5.26455 5.34409 5.37500 5.49475 5.55619 5.57397 5.68711 5.72568 6.01479 6.23764 6.32003 6.37697 6.38591 6.55043 6.63302 6.82783 6.89222 7.18527 7.25051 7.35488 7.48699 7.68389 7.89905 8.24308 8.30657 8.54797 8.61193 9.07893 9.65267 11.09592 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033315 B = 0.004473 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.269462 B = 6257.715444 C = 6285.055120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.666 5.666 14 C 0.070 3.930 15 H 0.057 0.943 16 C -0.140 4.140 17 C 0.519 3.481 18 O -0.526 6.526 19 N -0.622 5.622 20 C 0.078 3.922 21 C 0.048 3.952 22 O -0.382 6.382 23 C 0.045 3.955 24 C 0.067 3.933 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.094 0.906 29 H 0.007 0.993 30 H 0.259 0.741 31 H 0.340 0.660 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -2.296 16.075 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.524 4.524 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.301 5.301 14 C -0.043 4.043 15 H 0.074 0.926 16 C -0.198 4.198 17 C 0.308 3.692 18 O -0.401 6.401 19 N -0.359 5.359 20 C -0.045 4.045 21 C -0.029 4.029 22 O -0.300 6.300 23 C -0.032 4.032 24 C -0.056 4.056 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.113 0.887 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.265 -1.569 15.937 16.573 hybrid contribution -0.627 -0.545 -0.856 1.193 sum 3.639 -2.114 15.081 15.658 Atomic orbital electron populations 1.21571 0.97578 0.97966 1.01546 1.22131 0.95185 1.01153 1.00082 1.19296 0.96033 0.88508 0.85392 0.94663 1.21042 1.30342 1.11615 0.89445 0.91908 1.24893 0.95569 0.95153 0.98701 1.69870 1.38966 1.24113 1.20821 0.86557 0.79692 0.79467 0.82062 1.20819 1.21491 1.19908 1.60856 1.03768 1.63217 1.02266 1.21427 0.95577 0.98703 0.88617 0.92556 1.21926 0.95651 0.99353 1.02836 1.21207 0.86092 0.75945 0.85952 1.90662 1.18830 1.43963 1.86650 1.48160 1.11858 1.69236 1.06666 1.22305 1.00388 0.97967 0.83871 1.23070 0.82335 0.95820 1.01699 1.87941 1.22388 1.92085 1.27589 1.23036 0.99879 0.96189 0.84140 1.22665 0.82390 0.97343 1.03187 0.94943 0.91512 0.95875 0.88723 0.97436 0.93143 0.83802 0.91962 0.92813 0.90571 0.90918 0.88215 0.92583 0.87766 0.92438 0.87529 0.87561 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.39 37.16 0.35 -2.49 16 2 C -0.15 -3.39 5.50 -26.73 -0.15 -3.54 16 3 C 0.22 5.23 2.12 -68.87 -0.15 5.09 16 4 H 0.04 0.92 6.98 -51.93 -0.36 0.56 16 5 C -0.49 -13.12 7.41 -34.44 -0.26 -13.37 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.55 5.27 -17.82 -0.09 1.45 16 8 N -0.90 -24.89 11.38 55.43 0.63 -24.26 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.67 -14.61 5.86 -102.17 -0.60 -15.21 16 14 C 0.07 1.25 2.01 -68.86 -0.14 1.12 16 15 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 16 C -0.14 -2.20 8.97 37.16 0.33 -1.86 16 17 C 0.52 8.90 7.03 -10.99 -0.08 8.82 16 18 O -0.53 -10.78 15.28 5.55 0.08 -10.70 16 19 N -0.62 -8.27 3.01 -172.02 -0.52 -8.78 16 20 C 0.08 0.88 6.64 -3.31 -0.02 0.86 16 21 C 0.05 0.46 7.00 37.53 0.26 0.73 16 22 O -0.38 -4.09 10.74 -35.23 -0.38 -4.47 16 23 C 0.05 0.42 6.98 37.31 0.26 0.68 16 24 C 0.07 0.69 5.35 -3.53 -0.02 0.67 16 25 H 0.03 0.68 6.32 -51.93 -0.33 0.35 16 26 H 0.07 1.59 7.17 -51.93 -0.37 1.22 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.44 6.23 -51.92 -0.32 2.12 16 29 H 0.01 0.15 7.43 -51.93 -0.39 -0.24 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.34 7.74 5.38 -39.29 -0.21 7.52 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.64 5.34 -51.93 -0.28 0.37 16 34 H 0.08 1.31 7.27 -51.93 -0.38 0.94 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.24 7.12 -51.93 -0.37 0.87 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.11 1.08 4.56 -51.93 -0.24 0.84 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -30.57 322.47 -7.15 -37.72 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.51 Total: 6.36 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.31 Total: -1.85 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.49 Total: -48.26 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.29 Total: -15.17 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.57 -7.15 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228121149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.773 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds