Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.46922 * 120.62635 * 359.71868 * 8 6 5 10 10 C 1.53629 * 108.54153 * 126.36841 * 9 8 6 11 11 C 1.53041 * 109.24153 * 54.85351 * 10 9 8 12 12 H 1.08997 * 109.44432 * 178.49499 * 11 10 9 13 13 N 1.46903 * 109.45799 * 58.53323 * 11 10 9 14 14 C 1.53032 * 109.53920 * 298.51178 * 11 10 9 15 15 H 1.09000 * 109.50042 * 301.41570 * 14 11 10 16 16 C 1.50703 * 109.50070 * 181.31669 * 14 11 10 17 17 H 1.08001 * 119.99358 * 0.15905 * 16 14 11 18 18 C 1.37875 * 120.00247 * 180.16552 * 16 14 11 19 19 N 1.31515 * 119.99957 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99896 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47364 * 89.99471 * 20 18 16 22 22 H 1.48494 * 109.46841 * 209.99849 * 20 18 16 23 23 H 1.48503 * 109.47005 * 329.99259 * 20 18 16 24 24 C 1.46925 * 120.63204 * 179.97438 * 8 6 5 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 32 32 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 33 33 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.58779 * 246.19889 * 9 8 6 35 35 H 1.08999 * 109.59072 * 6.62974 * 9 8 6 36 36 H 1.09002 * 109.63668 * 294.86397 * 10 9 8 37 37 H 1.08995 * 109.43238 * 174.72420 * 10 9 8 38 38 H 1.00900 * 111.00038 * 59.93087 * 13 11 10 39 39 H 1.00904 * 110.99619 * 183.88434 * 13 11 10 40 40 H 0.96996 * 119.99578 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.58619 * 353.37573 * 24 8 6 42 42 H 1.08996 * 109.58291 * 113.79939 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9215 -2.0317 3.4308 10 6 2.2634 -2.2148 4.8069 11 6 2.0023 -3.7036 5.0470 12 1 1.5598 -3.8398 6.0338 13 7 3.2708 -4.4409 4.9735 14 6 1.0420 -4.2335 3.9799 15 1 0.1096 -3.6702 4.0174 16 6 0.7602 -5.6916 4.2361 17 1 1.2179 -6.1902 5.0777 18 6 -0.0819 -6.3890 3.3961 19 7 -0.6395 -5.7817 2.3716 20 14 -0.4317 -8.1962 3.7143 21 1 -1.6164 -8.3225 4.6007 22 1 -0.7023 -8.8822 2.4254 23 1 0.7457 -8.8204 4.3695 24 6 1.6812 -4.0715 2.5976 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 3.9046 -2.5026 3.4274 35 1 3.0224 -0.9689 3.2110 36 1 1.3194 -1.6705 4.8368 37 1 2.9288 -1.8326 5.5809 38 1 3.9226 -4.1094 5.6688 39 1 3.1176 -5.4339 5.0658 40 1 -1.2322 -6.2723 1.7809 41 1 0.9636 -4.3549 1.8277 42 1 2.5650 -4.7056 2.5274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258299206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = -86.581848 kcal Electronic energy + Delta-G solvation = -22592.426914 eV Core-core repulsion = 19379.231374 eV Total energy + Delta-G solvation = -3213.195540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17420 -38.12542 -36.07581 -34.01054 -33.09512 -32.76932 -29.79097 -28.76901 -27.22969 -27.11608 -25.13269 -24.15992 -21.86352 -21.18817 -19.19220 -18.16242 -17.03976 -16.25220 -16.09809 -15.48268 -15.09374 -14.62911 -14.40228 -14.14323 -14.02895 -13.75832 -13.08769 -12.86246 -12.69448 -12.33640 -12.05480 -11.92871 -11.85166 -11.64052 -11.54911 -11.32056 -11.00857 -10.98141 -10.90729 -10.72487 -10.45977 -10.27507 -10.14633 -9.91153 -9.30797 -9.12332 -8.96439 -8.46784 -8.05634 -7.45067 -6.01649 -4.10806 2.89808 3.29571 3.37189 3.38293 3.65518 4.39335 4.57434 4.96256 4.98489 5.14707 5.25147 5.39021 5.54645 5.59501 5.65007 5.70093 5.81277 5.84727 5.89251 5.91491 6.10206 6.12471 6.21306 6.27609 6.44159 6.57089 6.57246 6.65535 6.77228 6.85434 7.04126 7.19413 7.38180 7.59750 7.79531 7.96269 8.06197 8.28864 8.37653 8.41548 8.89315 9.19800 9.54237 11.03243 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.006096 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.400222 B = 4591.824079 C = 5489.491259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.373 6.373 6 C 0.640 3.360 7 O -0.568 6.568 8 N -0.583 5.583 9 C 0.126 3.874 10 C -0.127 4.127 11 C 0.096 3.904 12 H 0.022 0.978 13 N -0.838 5.838 14 C 0.047 3.953 15 H 0.029 0.971 16 C -0.519 4.519 17 H 0.056 0.944 18 C 0.065 3.935 19 N -0.877 5.877 20 Si 0.893 3.107 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.139 3.861 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.317 0.683 39 H 0.349 0.651 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 11.288 -0.990 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.289 6.289 6 C 0.394 3.606 7 O -0.457 6.457 8 N -0.323 5.323 9 C 0.002 3.998 10 C -0.166 4.166 11 C -0.015 4.015 12 H 0.040 0.960 13 N -0.369 5.369 14 C 0.027 3.973 15 H 0.047 0.953 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.514 5.514 20 Si 0.721 3.279 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.020 3.980 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.164 0.836 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.094 11.427 -2.202 13.136 hybrid contribution -0.514 -1.239 1.161 1.774 sum 5.580 10.188 -1.042 11.663 Atomic orbital electron populations 1.22504 0.94335 1.05468 1.01658 1.21874 0.94217 0.91178 0.82897 1.21824 1.01878 0.93220 1.02581 1.22497 1.01135 1.03936 0.96313 1.86258 1.72037 1.24988 1.45611 1.18165 0.79497 0.79865 0.83065 1.90874 1.41363 1.70075 1.43395 1.47537 1.51199 1.13873 1.19678 1.21501 0.94023 0.96758 0.87487 1.22037 1.00315 0.97626 0.96575 1.21406 0.90531 0.91309 0.98282 0.96039 1.58760 1.12653 1.09491 1.55964 1.19018 0.92456 0.96164 0.89631 0.95266 1.20911 1.28220 0.94534 1.12072 0.92590 1.25026 0.95524 0.98250 0.95067 1.69890 1.30236 1.36185 1.15048 0.86591 0.78536 0.85231 0.77590 1.20831 1.21187 1.19926 1.22164 0.99648 0.74040 1.02123 0.92522 0.91849 0.88902 0.91812 0.90689 0.91776 0.89070 0.91804 0.92581 0.91028 0.91254 0.92020 0.92456 0.87293 0.83591 0.92602 0.86443 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 37.16 0.31 -2.47 16 2 C 0.14 2.04 1.13 -90.62 -0.10 1.94 16 3 C -0.14 -1.53 8.85 37.16 0.33 -1.20 16 4 C -0.18 -2.67 8.37 37.16 0.31 -2.35 16 5 O -0.37 -6.79 8.52 -40.31 -0.34 -7.14 16 6 C 0.64 13.83 7.74 54.05 0.42 14.25 16 7 O -0.57 -13.74 11.29 -19.28 -0.22 -13.96 16 8 N -0.58 -12.48 2.97 -178.32 -0.53 -13.01 16 9 C 0.13 2.21 6.21 -3.49 -0.02 2.19 16 10 C -0.13 -2.15 5.79 -26.38 -0.15 -2.30 16 11 C 0.10 1.87 3.03 -67.67 -0.20 1.67 16 12 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 13 N -0.84 -14.61 7.77 -4.63 -0.04 -14.65 16 14 C 0.05 1.14 2.08 -91.67 -0.19 0.94 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -13.46 7.87 -34.44 -0.27 -13.73 16 17 H 0.06 1.40 6.93 -52.49 -0.36 1.04 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -25.12 11.39 55.43 0.63 -24.49 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 C 0.14 3.40 5.14 -3.73 -0.02 3.38 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.76 5.88 -51.93 -0.31 1.46 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.64 5.88 -51.93 -0.31 1.34 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.23 7.73 -51.93 -0.40 0.82 16 35 H 0.07 1.11 6.93 -51.93 -0.36 0.75 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.32 4.55 9.04 -39.29 -0.36 4.19 16 39 H 0.35 6.44 7.44 -39.29 -0.29 6.15 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 3.34 5.12 -51.93 -0.27 3.07 16 42 H 0.06 1.39 7.74 -51.93 -0.40 0.99 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -29.35 323.24 -7.17 -36.52 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.84 Total: 12.10 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 0.31 Total: 3.95 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.07 Total: -52.15 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.56 Total: -21.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.35 -7.17 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258299206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.065 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds