Wall clock time and date at job start Mon Mar 30 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.46922 * 120.62635 * 359.71868 * 8 6 5 10 10 C 1.53629 * 108.54153 * 126.36841 * 9 8 6 11 11 C 1.53041 * 109.24153 * 54.85351 * 10 9 8 12 12 H 1.08997 * 109.44432 * 178.49499 * 11 10 9 13 13 N 1.46903 * 109.45799 * 58.53323 * 11 10 9 14 14 C 1.53032 * 109.53920 * 298.51178 * 11 10 9 15 15 H 1.09000 * 109.50042 * 301.41570 * 14 11 10 16 16 C 1.50703 * 109.50070 * 181.31669 * 14 11 10 17 17 H 1.08001 * 119.99358 * 0.15905 * 16 14 11 18 18 C 1.37875 * 120.00247 * 180.16552 * 16 14 11 19 19 N 1.31515 * 119.99957 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99896 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47364 * 89.99471 * 20 18 16 22 22 H 1.48494 * 109.46841 * 209.99849 * 20 18 16 23 23 H 1.48503 * 109.47005 * 329.99259 * 20 18 16 24 24 C 1.46925 * 120.63204 * 179.97438 * 8 6 5 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 32 32 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 33 33 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.58779 * 246.19889 * 9 8 6 35 35 H 1.08999 * 109.59072 * 6.62974 * 9 8 6 36 36 H 1.09002 * 109.63668 * 294.86397 * 10 9 8 37 37 H 1.08995 * 109.43238 * 174.72420 * 10 9 8 38 38 H 1.00900 * 111.00038 * 59.93087 * 13 11 10 39 39 H 1.00904 * 110.99619 * 183.88434 * 13 11 10 40 40 H 0.96996 * 119.99578 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.58619 * 353.37573 * 24 8 6 42 42 H 1.08996 * 109.58291 * 113.79939 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9215 -2.0317 3.4308 10 6 2.2634 -2.2148 4.8069 11 6 2.0023 -3.7036 5.0470 12 1 1.5598 -3.8398 6.0338 13 7 3.2708 -4.4409 4.9735 14 6 1.0420 -4.2335 3.9799 15 1 0.1096 -3.6702 4.0174 16 6 0.7602 -5.6916 4.2361 17 1 1.2179 -6.1902 5.0777 18 6 -0.0819 -6.3890 3.3961 19 7 -0.6395 -5.7817 2.3716 20 14 -0.4317 -8.1962 3.7143 21 1 -1.6164 -8.3225 4.6007 22 1 -0.7023 -8.8822 2.4254 23 1 0.7457 -8.8204 4.3695 24 6 1.6812 -4.0715 2.5976 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 3.9046 -2.5026 3.4274 35 1 3.0224 -0.9689 3.2110 36 1 1.3194 -1.6705 4.8368 37 1 2.9288 -1.8326 5.5809 38 1 3.9226 -4.1094 5.6688 39 1 3.1176 -5.4339 5.0658 40 1 -1.2322 -6.2723 1.7809 41 1 0.9636 -4.3549 1.8277 42 1 2.5650 -4.7056 2.5274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258299206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:16 Heat of formation + Delta-G solvation = -106.702407 kcal Electronic energy + Delta-G solvation = -22593.299407 eV Core-core repulsion = 19379.231374 eV Total energy + Delta-G solvation = -3214.068033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73636 -39.70450 -37.63674 -35.64343 -34.75634 -34.40180 -31.54498 -30.37324 -28.32688 -28.23113 -27.10581 -25.76347 -23.57279 -22.69372 -20.72831 -19.74991 -18.72189 -18.18043 -17.52884 -17.05380 -16.75802 -16.21295 -16.05662 -15.73911 -15.34150 -15.17847 -14.60657 -14.38715 -14.26148 -13.74400 -13.55991 -13.27105 -13.13446 -12.93632 -12.90007 -12.78888 -12.68038 -12.54798 -12.33652 -12.23371 -12.17217 -12.13048 -11.83376 -11.29457 -11.07932 -10.94697 -10.75601 -10.51080 -9.66166 -9.04843 -8.08121 -6.24235 1.36004 1.44350 1.45130 1.54125 1.97594 2.43506 3.08305 3.23343 3.83435 3.85970 3.91537 4.01137 4.12117 4.20379 4.42554 4.55128 4.64041 4.70692 4.75912 4.79118 4.80017 4.84252 4.87203 4.92885 4.95478 5.12566 5.15345 5.25691 5.31858 5.34205 5.41279 5.51462 5.57980 5.66684 5.84899 5.97252 6.31401 6.53871 6.70751 6.85535 6.98824 7.44761 7.54123 8.95468 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.006096 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.400222 B = 4591.824079 C = 5489.491259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.129 4.129 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.636 3.364 7 O -0.602 6.602 8 N -0.591 5.591 9 C 0.125 3.875 10 C -0.120 4.120 11 C 0.103 3.897 12 H 0.020 0.980 13 N -0.834 5.834 14 C 0.046 3.954 15 H -0.016 1.016 16 C -0.523 4.523 17 H 0.067 0.933 18 C 0.011 3.989 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.259 1.259 24 C 0.158 3.842 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.341 0.659 39 H 0.344 0.656 40 H 0.258 0.742 41 H 0.072 0.928 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 12.895 -0.029 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.185 4.185 4 C -0.235 4.235 5 O -0.282 6.282 6 C 0.391 3.609 7 O -0.494 6.494 8 N -0.330 5.330 9 C 0.004 3.996 10 C -0.158 4.158 11 C -0.008 4.008 12 H 0.038 0.962 13 N -0.366 5.366 14 C 0.027 3.973 15 H 0.002 0.998 16 C -0.561 4.561 17 H 0.085 0.915 18 C -0.189 4.189 19 N -0.553 5.553 20 Si 0.784 3.216 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.183 1.183 24 C 0.038 3.962 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.012 13.072 -1.202 15.379 hybrid contribution -1.100 -1.663 0.820 2.156 sum 6.912 11.409 -0.382 13.345 Atomic orbital electron populations 1.22453 0.94870 1.02955 1.03344 1.22419 0.94148 0.93192 0.81844 1.21840 1.02491 0.89875 1.04336 1.22442 1.01591 1.01822 0.97605 1.86262 1.71754 1.22872 1.47269 1.18309 0.79057 0.80891 0.82651 1.90873 1.42730 1.71146 1.44643 1.47516 1.51734 1.13062 1.20725 1.21744 0.93610 0.97704 0.86589 1.22001 1.00832 0.95535 0.97474 1.21184 0.90414 0.93084 0.96153 0.96160 1.58641 1.11881 1.08991 1.57131 1.18918 0.91919 0.95135 0.91370 0.99762 1.21317 1.27492 0.95507 1.11806 0.91514 1.25861 0.95652 1.02487 0.94888 1.70096 1.31247 1.37725 1.16258 0.85558 0.78762 0.80226 0.77092 1.20530 1.21827 1.18273 1.21570 0.97910 0.75938 1.00824 0.92282 0.88701 0.93399 0.90845 0.87759 0.91196 0.93201 0.88776 0.91730 0.89979 0.89183 0.93071 0.88151 0.84631 0.84168 0.93259 0.90924 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.42 8.37 71.98 0.60 -4.81 16 2 C 0.12 3.47 1.13 -10.79 -0.01 3.45 16 3 C -0.13 -2.40 8.85 71.98 0.64 -1.77 16 4 C -0.18 -5.07 8.37 71.98 0.60 -4.46 16 5 O -0.37 -13.12 8.52 -55.45 -0.47 -13.60 16 6 C 0.64 28.32 7.74 129.79 1.00 29.32 16 7 O -0.60 -31.02 11.29 19.80 0.22 -30.80 16 8 N -0.59 -25.72 2.97 -948.50 -2.81 -28.54 16 9 C 0.13 4.17 6.21 86.51 0.54 4.71 16 10 C -0.12 -3.80 5.79 30.82 0.18 -3.63 16 11 C 0.10 3.92 3.03 44.94 0.14 4.06 16 12 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 13 N -0.83 -27.39 7.77 -168.57 -1.31 -28.70 16 14 C 0.05 2.30 2.08 -11.48 -0.02 2.28 16 15 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 16 C -0.52 -27.60 7.87 25.60 0.20 -27.40 16 17 H 0.07 3.31 6.93 -2.91 -0.02 3.29 16 18 C 0.01 0.59 5.30 84.65 0.45 1.04 16 19 N -0.91 -55.20 11.39 21.45 0.24 -54.95 16 20 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 C 0.16 8.06 5.14 86.35 0.44 8.50 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.90 5.88 -2.38 -0.01 1.89 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.86 5.88 -2.38 -0.01 1.85 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.58 7.73 -2.39 -0.02 2.57 16 35 H 0.09 2.65 6.93 -2.39 -0.02 2.63 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.34 8.61 9.04 -89.69 -0.81 7.80 16 39 H 0.34 12.14 7.44 -89.69 -0.67 11.48 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 4.40 5.12 -2.39 -0.01 4.39 16 42 H 0.05 2.45 7.74 -2.39 -0.02 2.43 16 Total: -1.00 -68.77 323.24 2.20 -66.57 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.46 Total: 33.15 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 4.76 Total: 11.29 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -3.88 Total: -112.19 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.25 Total: -44.40 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.77 2.20 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258299206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.132 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds