Wall clock time and date at job start Mon Mar 30 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46599 * 2 1 4 4 C 1.52997 * 109.47467 * 240.00495 * 2 1 3 5 5 O 1.45198 * 109.47044 * 119.99928 * 2 1 3 6 6 C 1.34636 * 116.99896 * 60.00768 * 5 2 1 7 7 O 1.21502 * 120.00164 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99698 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00075 * 185.06225 * 8 6 5 10 10 C 1.50708 * 109.53402 * 301.88107 * 9 8 6 11 11 H 1.07997 * 119.99746 * 125.20784 * 10 9 8 12 12 C 1.37880 * 119.99854 * 305.20519 * 10 9 8 13 13 N 1.31516 * 119.99947 * 6.10598 * 12 10 9 14 14 Si 1.86797 * 119.99876 * 186.09727 * 12 10 9 15 15 H 1.48504 * 109.46689 * 60.00726 * 14 12 10 16 16 H 1.48505 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47362 * 300.00450 * 14 12 10 18 18 C 1.53119 * 109.51355 * 181.78833 * 9 8 6 19 19 C 1.53120 * 109.15107 * 297.72193 * 18 9 8 20 20 C 1.53035 * 109.27768 * 302.33933 * 19 18 9 21 21 N 1.46852 * 109.52162 * 59.18024 * 20 19 18 22 22 C 1.46840 * 111.19821 * 298.25350 * 21 20 19 23 23 H 1.09002 * 109.46973 * 299.99559 * 1 2 3 24 24 H 1.08998 * 109.47448 * 59.99966 * 1 2 3 25 25 H 1.09008 * 109.46726 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46947 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47248 * 300.00157 * 3 2 1 28 28 H 1.09002 * 109.47097 * 60.00517 * 3 2 1 29 29 H 1.09008 * 109.46780 * 299.99897 * 4 2 1 30 30 H 1.08998 * 109.47163 * 59.99364 * 4 2 1 31 31 H 1.08993 * 109.47226 * 179.97438 * 4 2 1 32 32 H 0.97003 * 120.00196 * 5.05990 * 8 6 5 33 33 H 0.96999 * 119.99577 * 184.92439 * 13 12 10 34 34 H 1.08999 * 109.53134 * 177.81410 * 18 9 8 35 35 H 1.09004 * 109.57132 * 57.65610 * 18 9 8 36 36 H 1.08999 * 109.49844 * 182.39727 * 19 18 9 37 37 H 1.09000 * 109.49784 * 62.28389 * 19 18 9 38 38 H 1.08997 * 109.46331 * 299.16296 * 20 19 18 39 39 H 1.09000 * 109.45327 * 179.19009 * 20 19 18 40 40 H 1.00907 * 110.99958 * 62.35758 * 21 20 19 41 41 H 1.09001 * 109.46062 * 181.75814 * 22 21 20 42 42 H 1.08995 * 109.46717 * 301.73876 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3382 7 8 0.9511 -2.5095 0.5039 8 7 2.0682 -2.6657 2.4166 9 6 1.7685 -4.0953 2.5284 10 6 0.2769 -4.3034 2.4728 11 1 -0.1474 -4.9773 1.7433 12 6 -0.5459 -3.6334 3.3532 13 7 -0.0441 -2.7242 4.1601 14 14 -2.3735 -4.0171 3.3998 15 1 -2.5701 -5.4484 3.7434 16 1 -3.0318 -3.1667 4.4239 17 1 -2.9714 -3.7408 2.0689 18 6 2.3096 -4.6289 3.8577 19 6 3.8322 -4.4682 3.8811 20 6 4.4369 -5.2104 2.6871 21 7 3.8880 -4.6630 1.4399 22 6 2.4329 -4.8485 1.3737 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2494 32 1 2.5659 -2.2181 3.1186 33 1 -0.6082 -2.3042 4.8281 34 1 2.0530 -5.6834 3.9587 35 1 1.8713 -4.0667 4.6824 36 1 4.2279 -4.8851 4.8072 37 1 4.0874 -3.4103 3.8193 38 1 4.1928 -6.2704 2.7570 39 1 5.5197 -5.0859 2.6929 40 1 4.1339 -3.6903 1.3328 41 1 2.0602 -4.4613 0.4254 42 1 2.1981 -5.9102 1.4498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:11 Heat of formation + Delta-G solvation = -85.965539 kcal Electronic energy + Delta-G solvation = -23295.246943 eV Core-core repulsion = 20082.078129 eV Total energy + Delta-G solvation = -3213.168815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80252 -38.36243 -35.74860 -33.52142 -33.29663 -31.57343 -30.61121 -28.93636 -27.01756 -26.88002 -24.97273 -22.75088 -22.21236 -21.07786 -19.18255 -18.62602 -17.17195 -16.52761 -15.55707 -15.17251 -14.96493 -14.66444 -14.22050 -13.95537 -13.66548 -13.56810 -13.06044 -12.72435 -12.46669 -12.14037 -11.97871 -11.76130 -11.47726 -11.40266 -11.26402 -11.13799 -10.95651 -10.87198 -10.77832 -10.63262 -10.32640 -10.25760 -10.17463 -9.99415 -9.59369 -9.07485 -8.82963 -8.44354 -7.91696 -7.26659 -6.01907 -4.09328 3.27647 3.35396 3.38259 3.41795 4.26055 4.43082 5.04954 5.15468 5.20680 5.22720 5.37636 5.48863 5.54837 5.75947 5.78235 5.87663 5.90385 6.03349 6.10845 6.14791 6.26367 6.29140 6.32655 6.34930 6.36109 6.50010 6.67310 6.77014 6.79176 6.91890 7.06371 7.13778 7.40324 7.51697 7.64770 7.86985 8.01618 8.12538 8.24191 8.86084 9.01091 9.55430 9.85802 10.99108 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.010041 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.533926 B = 2787.934864 C = 4103.225733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.140 3.860 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.383 6.383 6 C 0.648 3.352 7 O -0.565 6.565 8 N -0.663 5.663 9 C 0.282 3.718 10 C -0.496 4.496 11 H 0.060 0.940 12 C 0.076 3.924 13 N -0.878 5.878 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.277 1.277 18 C -0.109 4.109 19 C -0.160 4.160 20 C 0.059 3.941 21 N -0.690 5.690 22 C 0.049 3.951 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.380 0.620 33 H 0.258 0.742 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.332 0.668 41 H 0.082 0.918 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 3.671 -3.493 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.102 3.898 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.300 6.300 6 C 0.400 3.600 7 O -0.454 6.454 8 N -0.318 5.318 9 C 0.198 3.802 10 C -0.535 4.535 11 H 0.078 0.922 12 C -0.128 4.128 13 N -0.516 5.516 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.202 1.202 18 C -0.147 4.147 19 C -0.200 4.200 20 C -0.071 4.071 21 N -0.318 5.318 22 C -0.081 4.081 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.213 0.787 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.146 3.013 -4.241 8.052 hybrid contribution -1.348 0.916 1.212 2.031 sum 4.797 3.929 -3.029 6.901 Atomic orbital electron populations 1.22472 0.94667 1.05490 1.01073 1.21701 0.93990 0.90932 0.83181 1.21818 1.01643 0.93783 1.02278 1.22485 1.00860 1.04005 0.96273 1.86271 1.72136 1.26211 1.45365 1.18102 0.79257 0.79025 0.83595 1.90760 1.40179 1.69786 1.44713 1.45386 1.57357 1.10342 1.18724 1.18563 0.94836 0.75592 0.91175 1.21149 0.90118 1.25325 1.16947 0.92170 1.24883 0.98324 0.93858 0.95732 1.69957 1.36301 1.24933 1.20362 0.86706 0.85766 0.78102 0.77730 1.20320 1.21594 1.20201 1.21719 0.91461 1.00889 1.00651 1.22371 0.98887 1.00087 0.98634 1.21958 0.97721 0.98997 0.88470 1.60838 1.13577 1.22784 1.34582 1.22482 0.84977 0.99956 1.00654 0.92755 0.92510 0.88739 0.92033 0.91066 0.91948 0.88956 0.92323 0.92840 0.78711 0.93192 0.92383 0.89807 0.92989 0.92850 0.91653 0.92328 0.85188 0.89943 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.37 37.16 0.31 -2.92 16 2 C 0.14 2.41 1.13 -90.62 -0.10 2.30 16 3 C -0.14 -1.85 8.85 37.16 0.33 -1.52 16 4 C -0.18 -2.88 8.37 37.16 0.31 -2.57 16 5 O -0.38 -7.91 9.94 -40.31 -0.40 -8.31 16 6 C 0.65 14.82 7.46 54.06 0.40 15.22 16 7 O -0.57 -13.97 9.21 -19.27 -0.18 -14.15 16 8 N -0.66 -14.71 3.10 -53.48 -0.17 -14.88 16 9 C 0.28 6.34 0.28 -132.89 -0.04 6.30 16 10 C -0.50 -12.99 6.53 -34.44 -0.22 -13.21 16 11 H 0.06 1.65 7.76 -52.49 -0.41 1.24 16 12 C 0.08 2.00 5.22 -17.82 -0.09 1.91 16 13 N -0.88 -23.37 11.11 55.43 0.62 -22.75 16 14 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.11 -2.25 4.64 -26.61 -0.12 -2.37 16 19 C -0.16 -2.71 5.90 -26.65 -0.16 -2.87 16 20 C 0.06 0.95 6.55 -3.83 -0.03 0.92 16 21 N -0.69 -12.55 6.85 -113.82 -0.78 -13.33 16 22 C 0.05 1.03 5.12 -3.84 -0.02 1.02 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 2.04 5.88 -51.92 -0.31 1.74 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.76 5.88 -51.92 -0.31 1.45 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.38 8.23 7.53 -40.82 -0.31 7.92 16 33 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.94 6.82 -51.93 -0.35 1.58 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.90 7.01 -51.93 -0.36 0.54 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.33 6.07 8.30 -39.29 -0.33 5.74 16 41 H 0.08 1.91 6.47 -51.93 -0.34 1.58 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -27.49 321.17 -7.43 -34.92 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -6.91 Total: 15.05 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.57 Total: 2.21 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.33 Total: -50.96 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.58 Total: -22.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.49 -7.43 -34.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.042 kcal (2) G-P(sol) polarization free energy of solvation -27.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds